mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 54 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,228,275 | 0 | T | C | 49.0% | 27.0 / 23.6 | 52 | intergenic (‑1005/‑707) | yohF/yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| * | NC_000913 | 4,296,268 | 0 | T | C | 37.0% | 17.6 / 24.5 | 28 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 803,869 | 0 | G | T | 35.7% | 46.9 / 16.4 | 42 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 1,245,234 | 0 | G | T | 31.6% | 98.4 / 16.5 | 57 | L25F (TTG→TTT) | ycgY | uncharacterized protein YcgY |
| * | NC_000913 | 3,813,272 | 0 | C | T | 30.9% | 94.4 / 24.5 | 68 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 30.3% | 128.3 / 13.8 | 66 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,159,837 | 0 | A | G | 30.1% | 160.7 / 16.5 | 73 | I572T (ATC→ACC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 4,004,132 | 0 | G | A | 30.0% | 109.2 / 19.2 | 62 | A16V (GCT→GTT) | rarD | putative transporter RarD |
| * | NC_000913 | 3,531,440 | 0 | A | C | 29.7% | 222.8 / 10.2 | 103 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 2,483,254 | 0 | G | A | 29.5% | 87.1 / 10.5 | 44 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 1,261,842 | 0 | T | G | 29.5% | 178.3 / 18.6 | 95 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| * | NC_000913 | 2,962,495 | 0 | T | G | 29.5% | 153.8 / 14.0 | 98 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdC |
| * | NC_000913 | 433,649 | 0 | T | G | 28.9% | 116.9 / 14.8 | 100 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 1,554,055 | 0 | T | G | 28.8% | 146.0 / 10.5 | 74 | T539P (ACC→CCC) | maeA | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| * | NC_000913 | 2,336,594 | 0 | A | C | 28.0% | 171.7 / 13.5 | 94 | G17G (GGT→GGG) | yfaA | DUF2138 domain‑containing protein YfaA |
| * | NC_000913 | 1,579,757 | 0 | C | A | 27.6% | 133.0 / 22.8 | 76 | C345F (TGC→TTC) | ydeM | putative anaerobic sulfatase maturation enzyme YdeM |
| * | NC_000913 | 2,265,236 | 0 | A | G | 27.5% | 242.4 / 19.1 | 123 | I20I (ATT→ATC) | yeiW | putative metal‑chelating domain‑containing protein YeiW |
| * | NC_000913 | 3,717,014 | 0 | T | G | 27.4% | 180.0 / 21.2 | 96 | G156G (GGT→GGG) | yiaD | PF13488 family lipoprotein YiaD |
| * | NC_000913 | 3,914,553 | 0 | A | G | 27.2% | 237.4 / 22.7 | 115 | H216H (CAT→CAC) | glmU | fused N‑acetylglucosamine‑1‑phosphate uridyltransferase and glucosamine‑1‑phosphate acetyltransferase |
| * | NC_000913 | 2,248,424 | 0 | C | A | 26.7% | 128.1 / 18.5 | 60 | V37F (GTT→TTT) | lysP | lysine:H(+) symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15912 | NA (NA) | 14 (0.150) +TTTTTCAA |
13/472 | 4.8 | NA | noncoding (526/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 1411899 = | 78 (0.820) | 4 (0.050) | 4/436 | 7.5 | 6.3% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 50 (0.590) | intergenic (‑552/+227) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | = 3229624 | 99 (1.040) | 3 (0.030) +CGA |
3/482 | 8.5 | 3.0% | coding (737/2352 nt) | ygjK | glycoside hydrolase |
| ? | NC_000913 | 3229625 = | 99 (1.040) | coding (738/2352 nt) | ygjK | glycoside hydrolase | |||||
| * | ? | NC_000913 | = 2536219 | 63 (0.660) | 3 (0.030) | 3/488 | 8.6 | 3.3% | coding (386/510 nt) | crr | Enzyme IIA(Glc) |
| ? | NC_000913 | = 4614089 | 112 (1.180) | coding (609/780 nt) | yjjV | putative metal‑dependent hydrolase YjjV | |||||
| * | ? | NC_000913 | = 188860 | 58 (0.610) | 3 (0.030) | 3/488 | 8.6 | 3.3% | coding (647/795 nt) | map | methionine aminopeptidase |
| ? | NC_000913 | = 1363802 | 116 (1.220) | coding (1060/1488 nt) | puuC | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase | |||||