mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,824,732 | 0 | T | G | 32.5% | 140.7 / 17.1 | 85 | V73G (GTG→GGG) | trmH | tRNA (Gm18) 2'‑O‑methyltransferase |
| * | NC_000913 | 3,895,556 | 0 | T | C | 31.0% | 107.5 / 17.2 | 73 | M352V (ATG→GTG) | adeP | adenine:H(+) symporter |
| * | NC_000913 | 3,505,088 | 0 | C | T | 30.4% | 75.7 / 10.8 | 46 | S311S (TCG→TCA) | yhfS | putative aminotransferase YhfS |
| * | NC_000913 | 3,274,940 | 0 | A | T | 30.0% | 53.7 / 10.9 | 30 | intergenic (‑33/‑342) | garP/garD | galactarate/D‑glucarate transporter GarP/GarD |
| * | NC_000913 | 729,710 | 0 | T | G | 28.8% | 94.0 / 10.3 | 60 | V43G (GTG→GGG) | rhsC | rhs element protein RhsC |
| * | NC_000913 | 2,185,238 | 0 | A | G | 28.7% | 179.4 / 14.4 | 81 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 119,396 | 0 | C | T | 28.6% | 61.8 / 10.6 | 43 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 4,296,268 | 0 | T | C | 28.0% | 25.7 / 15.5 | 25 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,906,769 | 0 | A | C | 27.4% | 111.8 / 11.5 | 62 | Y98D (TAT→GAT) | rlmA | 23S rRNA m(1)G745 methyltransferase |
| * | NC_000913 | 2,878,947 | 0 | C | T | 26.0% | 99.0 / 16.1 | 51 | E276K (GAA→AAA) | cas1 | multifunctional nuclease Cas1 |
| * | NC_000913 | 2,296,764 | 0 | T | G | 25.9% | 147.9 / 10.8 | 83 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 1,261,842 | 0 | T | G | 25.8% | 114.4 / 10.2 | 66 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| * | NC_000913 | 651,317 | 0 | G | T | 24.6% | 90.4 / 11.6 | 57 | V180V (GTC→GTA) | citC | citrate lyase synthetase |
| * | NC_000913 | 115,797 | 0 | C | A | 22.7% | 106.9 / 12.7 | 67 | E435* (GAA→TAA) | hofB | T2SSE family protein |
| * | NC_000913 | 4,176,115 | 0 | G | A | 22.4% | 134.4 / 16.2 | 77 | A58T (GCT→ACT) | tufB | translation elongation factor Tu 2 |
| * | NC_000913 | 2,185,199 | 0 | T | G | 22.2% | 132.7 / 10.6 | 72 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 21 (0.370) | 3 (0.050) | 3/470 | 4.6 | 12.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 22 (0.400) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||