mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,040,623 | 0 | G | A | 60.0% | 18.3 / 50.1 | 50 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA |
| * | NC_000913 | 3,875,521 | 0 | T | C | 37.5% | 12.1 / 11.7 | 24 | A28A (GCT→GCC) | yidX | putative lipoprotein YidX |
| * | NC_000913 | 3,486,386 | 0 | G | A | 34.9% | 48.7 / 17.8 | 43 | A89A (GCG→GCA) | crp | DNA‑binding transcriptional dual regulator CRP |
| * | NC_000913 | 4,502,761 | 0 | G | C | 26.5% | 103.0 / 13.3 | 49 | A224G (GCG→GGG) | insG | IS4 family putative transposase |
| * | NC_000913 | 119,396 | 0 | C | T | 25.5% | 93.5 / 11.9 | 52 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 3,289,080 | 0 | G | A | 24.1% | 87.1 / 10.3 | 54 | Q89Q (CAG→CAA) | yraJ | putative fimbrial usher protein YraJ |
| * | NC_000913 | 581,404 | 0 | C | G | 21.1% | 126.7 / 31.5 | 58 | intergenic (+25/‑130) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| * | NC_000913 | 4,429,990 | 0 | A | T | 21.1% | 129.9 / 11.1 | 57 | M43L (ATG→TTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 581,416 | 0 | A | G | 20.0% | 97.9 / 24.3 | 57 | intergenic (+37/‑118) | nohD/tfaD | putative DNA‑packaging protein NohD/putative tail fiber assembly protein TfaD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4053613 | 51 (1.010) | 3 (0.060) | 3/442 | 3.3 | 4.8% | intergenic (+195/+34) | hemN/yshB | coproporphyrinogen III dehydrogenase/uncharacterized protein YshB |
| ? | NC_000913 | 4285379 = | 72 (1.560) | intergenic (‑166/+34) | yjcH/acs | DUF485 domain‑containing inner membrane protein YjcH/acetyl‑CoA synthetase (AMP‑forming) | |||||
| * | ? | NC_000913 | = 1084696 | 54 (1.070) | 4 (0.080) | 3/452 | 3.3 | 7.7% | intergenic (+49/‑296) | efeB/phoH | heme‑containing peroxidase/deferrochelatase/ATP‑binding protein PhoH |
| ? | NC_000913 | = 3392145 | 46 (0.970) | intergenic (‑117/+313) | tldD/yhdP | metalloprotease subunit TldD/phospholipid transport factor YhdP | |||||
| * | ? | NC_000913 | = 1840339 | 52 (1.030) | 3 (0.060) | 3/454 | 3.4 | 6.1% | coding (873/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | NC_000913 | 4549478 = | 44 (0.930) | coding (671/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin | |||||