Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,040,623	0	G	A	60.0%	18.3 / 50.1	50	noncoding (107/120 nt)	rrfA	5S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (8/12);  new base A (8/22);  total (16/34)
Fisher's exact test for biased strand distribution p-value = 3.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

AACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCG  >  NC_000913/4040391‑4040867                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     aaCCGGTACTAATGAACCGTGAGGCATAACCTTACAACGCCGAAGTTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCTTCATGCGAGAGTAGGAAACTGCCATGCATCaa                                                                                                                                                                                                                                      <  2:394599/249‑1 (MQ=9)    cGGTACTAATGAATCGTGAAGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAATATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCGCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATaaa                                                                                                                                                                                                                                 <  2:458875/251‑1 (MQ=255)     ggTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATaaaa                                                                                                                                                                                                                                <  1:86307/251‑1 (MQ=18)                       ggCTTAACCTTTCAACGCCGAAGGTGTGTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGaa                                                                                                                                                                                                              <  2:332906/251‑1 (MQ=255)                             aCCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAATACTgg                                                                                                                                                                                                        <  2:279067/251‑1 (MQ=255)                                  aCAACGCCGAAGGTGTTTTGGCGTATTGAGATAAGATTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTTCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGGAGTGTGGGGGCTCCGCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAATGCTCAGTCGGAAGACTGGGCCtt                                                                                                                                                                                                   <  2:502878/251‑1 (MQ=11)                                  aCAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCtt                                                                                                                                                                                                   <  1:301917/251‑1 (MQ=38)                                   cAACGCCGAATGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAGGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCttt                                                                                                                                                                                                  <  2:272478/251‑1 (MQ=255)                                   cAACGCCGAAGCTGTTTTGGCGGATT‑AGAGAAGATTTTCAGCCTGATACAGATTAAAGCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTc                                                                                                                                                                                                 <  2:325901/251‑1 (MQ=9)                                    aaCGCCGAAGGTGGTTTGGCGGATTGAGAGAAGATTGTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTc                                                                                                                                                                                                 <  2:135210/251‑1 (MQ=255)                                          gatgggttgttGGCGGAGTGAGAGAAGATTTTCAGCCTTATACAGAATAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATGTGCCTGGCGGCAGTAGCTCGGAGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTa                                                                                                                                                                                           <  2:21907/242‑1 (MQ=11)                                                gtTTTGGAGGAT‑GAGAGAAGGTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATACAACAGAATTTGCCTGGCGGCAGTAGAGCGGTGGT‑CCCACCTGACCCCATGCAGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGACACATCATGCGAGAGTAGGGAACGGCCAGGCATGAAATAAAACGAAAGGCTCAGTCGGAAGACTGCGCCTTTCGTTTTATCtgttg                                                                                                                                                                                    >  2:123004/1‑251 (MQ=11)                                                    tGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGGGAAACGCCGTAGCGTCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCCGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACAGGGCCTTTCGTTTTATCTGttgttt                                                                                                                                                                                 >  2:402540/1‑251 (MQ=255)                                                        ggATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGGTGGCAGTGTGGGGACTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTAAGTCGGAGGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg                                                                                                                                                                             >  2:368213/1‑251 (MQ=255)                                                          atggagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCGGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt                                                                                                                                                                           <  2:41376/248‑1 (MQ=16)                                                             gagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa                                                                                                                                                                         >  1:488951/1‑250 (MQ=33)                                                                agaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACt                                                                                                                                                                                                          <  1:270697/214‑1 (MQ=18)                                                                  aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGctc                                                                                                                                                                   >  1:19250/1‑251 (MQ=33)                                                                   agaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGctct                                                                                                                                                                  <  1:561718/251‑1 (MQ=18)                                                                   agaTTTTCAGCCTGATACAGATTAAATAAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCAATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTATTGTGGGGTCTCCTCATGCGAGAGAAGGAAACTGCAAGGAATCAAATAAAACGACAGTCTACGTCGGAGGACTGAGACCTACGTTTTATCTGTTGTTTGTCGATGaaatcact                                                                                                                                                                  >  2:412734/1‑245 (MQ=11)                                                                    aaTTTTCAGCCTGATACAGAATAAATCAGAACGCAGAAGCGGTCTGATAAATCAGAATTTGCCTGGCGGCAGTAGCGCGGTGGG‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCgctc                                                                                                                                                                 <  2:227178/250‑1 (MQ=16)                                                                          cagtgtGATACAGATTAAATCAGAACGCAGAAGCTGGCTGATAAAACAGAATTTGCCTGGCGGCAGTAGTGCGGTGGT‑CTCTCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGGGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGGTTTATCTGTTGTTTGTCGGTGAACGCTCTCCGGAg                                                                                                                                                            <  2:404736/245‑1 (MQ=11)                                                                          cAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTGTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGt                                                                                                                                                           <  1:478829/251‑1 (MQ=18)                                                                            gCCTGATTCAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAg                                                                                                                                                         <  2:333369/251‑1 (MQ=18)                                                                            gCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGGTTTAGCTGGTGTTTGTCGGTGAACGCTCTCCTGAGTAg                                                                                                                                                         <  1:155993/251‑1 (MQ=18)                                                                                gATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACa                                                                                                                                                     <  1:428580/251‑1 (MQ=33)                                                                                gATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGAc                                                                                                                                                      <  1:301463/250‑1 (MQ=18)                                                                                gATACAGATTAAATCAGAACGCAGAAGCGGTATGATAAAACAGAATTTGCCGGGCGGCAGTAGCGCGGTGGT‑CCCCCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGTTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACa                                                                                                                                                     <  2:94644/251‑1 (MQ=16)                                                                                          aaaTCAGAACGCAGAAGCGGTCTGATAAACCCGGATCGGTCTGGCCGCAGTAGCGCGGGGGT‑CCCACCGGACCCCAGGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAATTAAAACGAAAGGCTCAGGCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATccgctg                                                                                                                                            <  2:164319/250‑3 (MQ=11)                                                                                           aaTCAGAACGCAGAAGCGGGCTGATAAAACAGAATTTGCCGGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCggg                                                                                                                                          <  2:476584/251‑1 (MQ=18)                                                                                               aGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATcc                                                                                                                                                >  1:25733/1‑241 (MQ=33)                                                                                               aGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACCCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATcc                                                                                                                                                <  2:25733/241‑1 (MQ=18)                                                                                                gAACTCAGATGCGGTCTGATAAAACAGAATTAGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGTTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTCGGCCTTTCGTTTGATCTGTTGTTTGTCGGTGATCGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCgg                                                                                                                                     <  1:427172/251‑1 (MQ=11)                                                                                                 aaCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACTAAGCCGCCGGGAGCGGa                                                                                                                                    <  1:470738/251‑1 (MQ=18)                                                                                                  aCGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTTGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCGGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGAt                                                                                                                                   <  1:33564/251‑1 (MQ=18)                                                                                                     cAGAAGCGGTCTGATAAAACCGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGATAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAAGCACTCCTGAGTAGGACAAATCCACCGGGAGCGGAttgt                                                                                                                                >  2:557408/1‑249 (MQ=11)                                                                                                           ggttcttaTAAAACAGAGTGTGACGGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAGGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAGATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGGAGGACAAAGCCGCCGGGAGCGGATTTGAACGtt                                                                                                                          <  2:559945/244‑1 (MQ=11)                                                                                                            ggtatGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGCTGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGACAGGCTAAGTAGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCACGAGTCGGCCAAATCCGCCGGGAGCGGTTTTGAACgatg                                                                                                                         >  2:515288/5‑248 (MQ=11)                                                                                                                      aaCAGAAGTTGCTTGGCTGGAGTAGCGCGG‑GGTGCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGAGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACGGCCAGGCATCAAATAAAACGAAATGCGCAGTCGGAAGACTTGGCCTGTCGTTTTATCTGTTGTTTCTCGGTGAACGCTCTCCTTAGTAGGACAAATCCGACTGGAGCTGATTAGAACGTTGCGCAGCAACg                                                                                                               <  2:82324/251‑1 (MQ=11)                                                                                                                        cagaaggtgccgtgcggcAGTAGCGCGGTGGT‑CCACCCTGACCCCACGCCGAACTCAGAAGTGAAACGCCGTATCGCCGATGTTAGTGTGGGGTCTCCGCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGCAAGGCGCAGTCGGAAGACTGTGCCTTTCGTTTTAGCTGTTGTTTGTCTGTGAACGCTCTCCTGAGTAGGACAAAGCCGCCGGGAGCGGATGTGAAAGTTGCGAAGCAACGGc                                                                                                             <  2:301460/238‑1 (MQ=11)                                                                                                                              ttGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGa                                                                                                        <  1:368213/250‑1 (MQ=33)                                                                                                                                      cggcAGTAACGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCgg                                                                                               >  1:152362/1‑251 (MQ=18)                                                                                                                                              gcgcGGTTGT‑CCCTCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGTGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGTCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGATCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAcg                                                                                       <  1:480412/251‑1 (MQ=255)                                                                                                                                                       gccccACCTGACCCCAGGCCGAACTCAGAAGGGAAACGCCGTAGCGCCGAGGGGAGTGTGGGGTCTCCTCATGCGAGAGGAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTGGTTTGTCGGTGAACGCTCGGCGGAGTAGGACAAAGCCGCGGGGAGCGGATGGGAACGGTGCGAAGCAGCGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCa                                                                                <  2:245013/248‑1 (MQ=11)                                                                                                                                                         cccACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGATCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGACGCAACGGCCCGGAGGGGGGCGGGCCGGAcgcccgcccta                                                                              >  1:342605/1‑247 (MQ=255)                                                                                                                                                            aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGACTCCTCATGAGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGTAAGGCTCAGTCGGGAGACTGGGCCTTTCGTTTTATCTATTGTTTGTCGGTGAACGCTCTCCTGCGTAGGACAAATCAGCCGGGCGCGGATTTAAACGTTGCGAAACAAAGGACCGGAGGGGGGCGGGCAGGACGCCAGCCCTAAACt                                                                          >  2:434215/1‑251 (MQ=11)                                                                                                                                                              cTGACACCATGACGCACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGAAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGCGTATGACAATTCCGCCGGGAGCGGATTTGAACGTTGCGAATCAACGGACAGGAGGGGGGGGGGCCGGaacgccgccaaatcctgc                                                                        >  2:206179/1‑234 (MQ=11)                                                                                                                                                                          cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTCGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAACCGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGTACCAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAAGACACCCCCCCCAAACTGCCAGGGATCAAAt                                                            >  2:521753/1‑251 (MQ=11)                                                                                                                                                                               tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCCTAAACTGCCAGGCATCAAATTAAGc                                                       >  1:78444/1‑251 (MQ=18)                                                                                                                                                                                                                                    agTAGGAAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCg  >  1:196995/1‑251 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                     AACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT‑CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCTCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGGAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCATTGGCGCAGAAAAAAATGCCG  >  NC_000913/4040391‑4040867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑