| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,429,990 | 0 | A | T | 21.1% | 129.9 / 11.1 | 57 | M43L (ATG→TTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| Reads supporting (aligned to +/- strand): ref base A (7/38); new base T (12/0); total (19/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.12e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TAGTATTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGC > NC_000913/4429742‑4430240 | tAGTATTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTAt < 1:65751/250‑1 (MQ=255) aTCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTTGG‑ACGGGGGTGTTTATG‑GGGGCTgg > 1:359241/1‑251 (MQ=255) cgTAGTGTTACCTAAGATCGATGAGTCCCGATAAAGAATCGTCGTATCATATACTGAATAAAGCCCGTAGAGCCTGAACAAAACAG‑ACAGGTACAGGAAGAAAAAAACATGGAAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATATCACAATCCGACATATGCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAAc < 2:191741/251‑1 (MQ=255) gTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑GCGGGGGTGTTTTTG‑GGGGCTGGCAAAACGA‑tt > 1:22093/1‑249 (MQ=255) aCCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTg < 2:170663/235‑1 (MQ=255) aaTATCGATGTGTCCCGAGCCAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTATATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑Gcc < 2:22093/251‑1 (MQ=255) aaTATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑Gc < 1:463337/250‑1 (MQ=255) atatCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTTTG‑GGGGCTGGCAAAACGA‑TTAGcccttccg > 1:209559/1‑245 (MQ=255) gaggcccGATACAGATACGTCGTAGCTAAGACTGACAAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTCGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACAGATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑TCGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCg < 2:162340/247‑1 (MQ=255) gAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCg < 1:423320/251‑1 (MQ=255) gTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGAt < 1:314882/251‑1 (MQ=255) ccGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTTGCATTGGT‑ACGGGGGTGTTTTTT‑GGGGCTGGGAAAAAAA‑TTAGACTT‑GCCGGGGCGGCGAtact > 1:510695/1‑248 (MQ=255) cGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGG‑ACGGGGGTGTTTTTGTGGGT‑TGGCAAAACGA‑TTAGCCTT‑TCCGGGGCGTCggtcctt > 1:409119/1‑245 (MQ=255) aGATTCGTCGTATCATAGACGGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGtt < 1:369288/251‑1 (MQ=255) aTTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑AAGGGGGTGTTTTTG‑GGGTCTGGCAAAAAGA‑TTAGCCTT‑GCCGGGGCGTCGGTCATTTTTGtttt > 1:51973/1‑250 (MQ=255) cATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAGACGA‑TTAGCCTT‑GCCGGGCCTTCGATCATGTTCGTTTATATGATCAtt < 1:221662/250‑1 (MQ=255) cATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTg < 1:538048/251‑1 (MQ=255) gactAAATGCCGTAGAGCCTGAACAACACAG‑ACAGGGACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTAGTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGAGCATTGGTTTTAt < 1:445179/250‑1 (MQ=255) gactAAAGTCCGTAGATCCTGAACAACCAAG‑ACAGGTACAGGAATAAAAAAACATGGTAGATCAGGTAAAATGCGTTGCCGATGATCAGTCTCCGGCTGAACAGTCTCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGTTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTGTTAt < 2:517895/250‑1 (MQ=255) ccgtaaatacgtaacaacAAAG‑TCAGTTACAGGAAAAAAAAAACATGGGAGATCATGAAAAAGTCGTTTCTAAAAATCAGGCTCCAGCTTAACAGGATCTACGGTGCAATCTCACAATCCGTCATATTCAGTTTATTGCAATTGGCGTTGCCATTGGT‑ACTGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGTGCCGTCGATCAGTTACGGTTATATGATCATTGGTTTTATGCTCTTTTTc < 2:232532/239‑1 (MQ=255) gTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGT‑TCGGGGTTGTTTTTT‑GGGTCTTGCAAAACGA‑TTTTCCTT‑GCCTGGCCGTCGCTCTTTTTTTTTTTTATTATCTTTTGTTTTTTGCTCtttttttt > 1:227820/1‑248 (MQ=255) gTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGTT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGt < 1:400257/251‑1 (MQ=255) gTAGAGCCTGAACAACA‑AGCACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCTCTACGGCTCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTGGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGTCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGt < 1:331296/251‑1 (MQ=255) agagCATGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGTTAGATCAGGTAAAAGGCGTTGCCGATGCTCAGGCTCCGGCTGAACAGCCGCTACGGCGCAATCTCACAAACCGACATATTCAGCGTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGTCTT‑GCCGGGCCGTCGATCATTTTCGGTTATATGATCATTGGGTTTATGCTCTTTGTCGTG‑a < 2:433055/251‑1 (MQ=255) gagCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGTTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGCCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATGGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑At < 2:510695/251‑1 (MQ=255) acaacaCAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCaa < 1:220299/251‑1 (MQ=255) aacaCAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATg < 2:209559/251‑1 (MQ=255) acacAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATgg < 1:374705/251‑1 (MQ=255) ag‑acagGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTGGCTACGGCTCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGa < 1:262137/251‑1 (MQ=255) g‑acagGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGGACCTTTTCGTTTATAATATTATTGGGTTTATGCTCTTTTTCGTG‑ATG‑GGGGGCATGGGGGa > 1:225923/1‑250 (MQ=255) gtaaaGGAAGAAAAAAACATGGTAGATCAGGTAAAAGGCGTTGCCGATGATCATGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTGATATGATCATTGGTTGTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATtgct < 2:359241/247‑1 (MQ=255) gTACAGGAAGAAAAAAACATGGTATATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATtgct < 2:409119/251‑1 (MQ=255) gaagaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGTGAGGGGGTT‑TTTTTA‑GGGGCTTGGAAAACGA‑ATAGCCTTTGCCGG‑CCGGCGATCCTTTTCTTTTTTATTATCCTTGGGTTTATGATCTTTTTTGTG‑GTGGCGGGAATTGGGGGattggttctttc > 1:543277/1‑240 (MQ=255) gaaAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTTTG‑GGGGCTTGCAAAACGA‑TTTACCTT‑TCCGGGGCGTCGATAATTTTTGTTTATATTGTCCTTTGTTTTATTCTCTTTTTTGTG‑TTG‑CGGGGACTGGGGGGATtgttgcgtttga > 1:551300/1‑244 (MQ=255) aaaaaaaCATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCGTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAAt < 1:334408/251‑1 (MQ=255) aCATGGTAGATCAGGTAAAAGTCGTTGCCGATTAGCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGaa < 1:569205/251‑1 (MQ=255) tGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGGCCTTTGT‑ACGGGGGTGTTTTTG‑GGGGCTGGCAAAAAGA‑TTAGCCTT‑GTCGGGGCGTCGAGCATTTTTGTTTATATGATTATTGGGTTTTTGCTCTTTTTCGTG‑ATG‑GCGGCAATTGGGGGATTGTTGCTTTCGAATCTgggaatc > 1:19763/1‑246 (MQ=255) cAGGTAAAAGTCGTTGCCTAAGAGCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGTAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGTAATACAAATCta < 2:308903/250‑2 (MQ=255) aaaGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATAGTCAGCTTATTGCCATTGGCGGTGTCAGTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGa < 1:64209/251‑1 (MQ=255) cGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTc < 1:477249/250‑1 (MQ=255) gCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCtt < 2:152286/250‑1 (MQ=255) atcagggtccggggaaaCAGTCGCTACGGCGCAACCTCACAAACTGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTa < 2:120156/236‑1 (MQ=255) atCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTATT‑GGGGCTGG‑GCAACGAATTAGCCGT‑GGCGGGGCGTCGGTCATTTTCGTTTTTATTATCATTGGGTTTTTGATCTTTTTTGTGGAGG‑GGGGCAAGGGGGGGTTTG‑TGCTTTTGAGTCTGGGATACAAAACTTTTatgggcttcgcgtccggtttt > 2:217972/1‑231 (MQ=255) gccccGGCCGAACAGTCGCTACGGCGCAATCTCAAAAACCGACAGATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCgg < 2:51940/248‑1 (MQ=255) gcgcAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTATG‑GGGGCTGGCAAAACGA‑TTAGCCTT‑TCCGGGCCGTCGGTCATTTTCGTTTTTATGATCAATGGGTTTATGCTCTTTTTTGTG‑ATG‑GGGGCAATGGGGGGATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTATTCGGGCCGTGGGCAgggtaatttaccc > 1:458732/1‑240 (MQ=255) acaAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATa < 2:152936/182‑1 (MQ=255) acaAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGGTGTTTTTG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATTATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGGATTGCTGCTTTCGAATCTGGAATa > 1:152936/1‑182 (MQ=255) ccGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑AAGGGGTTGTTTTTG‑GGGTCTTGCAAAACGG‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTTGTTTATATTATCATTGGTTTTTTTCTCTTTTTTGTG‑ATG‑GGGGCAATGGGGGGATTGCTGCTTTTGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTTCTCGGGCCGGGGGCAGGGTATTTTAACGGCTGGACTTACTggg > 1:324186/1‑250 (MQ=255) cGACATATTCAGCTTATTGCCATTGGCGGTGCCCTTTGT‑ACGGGGGTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGGTCATTTTCGTTTATATGATCATTGGTTTTTTGCTCTTTTTCGTG‑ATG‑CGGGCCATGGGGGGATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGCTTTTCTCTGGCCGTGGGCCGGGTATTTTAACGGCTGGACTTACTGGtt > 1:388056/1‑251 (MQ=255) gACATATTCAGCTTATTGCCATTGGCGGTGACATTGGC‑AAGGGGGTGTTTTTG‑GGGGCTGGCAAAACGA‑TTAGCCTT‑TCCAGGCCGTCGAGCCTTTTCGTTTTTATGTTCATTGGTTTTATTCTCTTTTTTGTG‑ATG‑CGGGCAATGGGGGGATTTCTGATTTCGTATCTTGAGTACAAATTTTTTTGTGACATCGCCTCCGATTTACTCGGGCCGCGGGCCGGAGATTTCACCGGCTggcactacttgttc > 1:343194/1‑239 (MQ=255) aTTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTaa < 1:257707/250‑1 (MQ=255) gCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCg < 1:289562/250‑1 (MQ=255) ccATTGGT‑ACGGGGTTGGTTATG‑GGGTCTGGCAAAACGA‑TTTGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACgtg < 2:388056/251‑1 (MQ=255) gT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGCATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGTTTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGGTCTTCTGGGTGTTTACCGGTTTGGCAggctgtgggggg > 2:8237/1‑240 (MQ=255) ggTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGTCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGTTTGTAACCGGTATGACAGACGTGGTGGCGATCACg > 1:41782/1‑251 (MQ=255) gttgttTATG‑GGGTCTGGCAAAACGA‑GTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTTGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACgg < 2:51973/251‑1 (MQ=255) gttTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCt < 1:92445/250‑1 (MQ=255) aTG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGc > 1:348899/1‑251 (MQ=255) | TAGTATTCATCCCGCGTATTGTTACCTAATATCGATGAGTCCCGATACAGATTCGTCGTATCATAGACTGACTAAAGGCCGTAGAGCCTGAACAACACAG‑ACAGGTACAGGAAGAAAAAAACATGGTAGATCAGGTAAAAGTCGTTGCCGATGATCAGGCTCCGGCTGAACAGTCGCTACGGCGCAATCTCACAAACCGACATATTCAGCTTATTGCCATTGGCGGTGCCATTGGT‑ACGGGGTTGTTTATG‑GGGTCTGGCAAAACGA‑TTAGCCTT‑GCCGGGCCGTCGATCATTTTCGTTTATATGATCATTGGTTTTATGCTCTTTTTCGTG‑ATG‑CGGGCAATGGGGGAATTGCTGCTTTCGAATCTGGAATACAAATCTTTTAGTGACTTCGCTTCCGATTTACTCGGGCCGTGGGCAGGATATTTCACCGGCTGGACTTACTGGTTCTGCTGGGTTGTAACCGGTATGGCAGACGTGGTGGCGATCACGGCTTATGC > NC_000913/4429742‑4430240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |