#=GENOME_DIFF	1.0
#=CREATED	16:28:15 28 Nov 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20231211run9/CV67_S21_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20231211run9/CV67_S21_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20231211run9/CV67_S21_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV67_S21_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20231211run9/CV67_S21_L001_R2_001.fastq.gz
#=CONVERTED-BASES	278621498
#=CONVERTED-READS	1144635
#=INPUT-BASES	278645804
#=INPUT-READS	1144806
#=MAPPED-BASES	234201203
#=MAPPED-READS	972396
SNP	1	356	NC_000913	1903	A
SNP	2	357	NC_000913	10696	T
SNP	3	358	NC_000913	23501	T
SNP	4	359	NC_000913	31683	T
SNP	5	360	NC_000913	42108	A
SNP	6	361	NC_000913	59968	T
SNP	7	362	NC_000913	76249	A
SNP	8	363	NC_000913	88571	A
SNP	9	364	NC_000913	113695	A
SNP	10	366	NC_000913	156068	G
SNP	11	367	NC_000913	157585	T
SNP	12	368	NC_000913	224625	A
DEL	13	751,770	NC_000913	402391	723
SNP	14	369	NC_000913	466148	A
SNP	15	370	NC_000913	469271	A
SUB	16	371,372	NC_000913	480295	2	AA
SNP	17	373	NC_000913	502232	A
SNP	18	374	NC_000913	566155	C
SNP	19	375	NC_000913	566176	T
SUB	20	376,377	NC_000913	566181	2	TG
DEL	21	378	NC_000913	566186	1
SUB	22	379,380	NC_000913	566190	1	GA
SUB	23	381,382,383,384	NC_000913	566199	4	GAGG
SNP	24	385	NC_000913	566205	C
SUB	25	386,387	NC_000913	566214	2	CG
SNP	26	388	NC_000913	566221	G
SUB	27	389,390	NC_000913	566223	2	GG
SNP	28	391	NC_000913	566227	A
SNP	29	392	NC_000913	566229	T
SNP	30	393	NC_000913	566236	G
SNP	31	394	NC_000913	566239	T
SNP	32	395	NC_000913	566254	G
SNP	33	396	NC_000913	566260	T
SNP	34	397	NC_000913	566267	A
SNP	35	398	NC_000913	566272	T
SNP	36	399	NC_000913	566275	G
SUB	37	400,401	NC_000913	566283	2	CG
SNP	38	402	NC_000913	566320	C
SNP	39	403	NC_000913	566323	A
SNP	40	404	NC_000913	566326	C
SNP	41	405	NC_000913	566329	G
SNP	42	406	NC_000913	566332	G
SNP	43	407	NC_000913	566335	T
SNP	44	408	NC_000913	566344	G
SNP	45	409	NC_000913	566347	A
SNP	46	410	NC_000913	566350	G
SNP	47	413	NC_000913	662269	T
SNP	48	414	NC_000913	696470	T
SNP	49	415	NC_000913	784677	A
SNP	50	416	NC_000913	881531	T
SNP	51	417	NC_000913	1015891	T
MOB	52	764,766	NC_000913	1091173	IS5	-1	4
SNP	53	418	NC_000913	1137212	T
SNP	54	419	NC_000913	1138130	T
SNP	55	420	NC_000913	1147196	T
SNP	56	421	NC_000913	1156913	A
SNP	57	422	NC_000913	1169836	G
SNP	58	423	NC_000913	1174883	T
SNP	59	424	NC_000913	1175517	G
SNP	60	425	NC_000913	1188861	T
SNP	61	426	NC_000913	1189980	G
SNP	62	427	NC_000913	1191644	T
SNP	63	428	NC_000913	1197637	T
MOB	64	768,773	NC_000913	1199869	IS3	1	4	ins_start=GA
SNP	65	429	NC_000913	1235755	T
SNP	66	430	NC_000913	1239343	T
SNP	67	431	NC_000913	1250264	T
SNP	68	432	NC_000913	1257135	T
SNP	69	433	NC_000913	1268367	T
SNP	70	434	NC_000913	1269702	T
SNP	71	435	NC_000913	1282627	T
SNP	72	436	NC_000913	1290669	A
DEL	73	754,776	NC_000913	1299499	1199
MOB	74	762,777	NC_000913	1301050	IS1	1	9
SNP	75	437	NC_000913	1301992	T
SNP	76	438	NC_000913	1306736	G
SNP	77	439	NC_000913	1310770	G
SNP	78	440	NC_000913	1321672	T
SNP	79	441	NC_000913	1322759	A
SNP	80	442	NC_000913	1335123	T
SNP	81	443	NC_000913	1336353	T
SNP	82	444	NC_000913	1337394	G
SNP	83	445	NC_000913	1358859	C
SNP	84	446	NC_000913	1384652	G
SNP	85	447	NC_000913	1387908	T
SNP	86	448	NC_000913	1395566	T
SNP	87	449	NC_000913	1399069	T
MOB	88	778,779	NC_000913	1399590	IS5	1	4
SNP	89	450	NC_000913	1401893	A
SNP	90	451	NC_000913	1405569	T
SNP	91	452	NC_000913	1418807	T
SNP	92	453	NC_000913	1419414	T
SNP	93	454	NC_000913	1428107	T
SNP	94	455	NC_000913	1430310	T
SNP	95	456	NC_000913	1441765	T
SNP	96	457	NC_000913	1453992	A
SNP	97	458	NC_000913	1460345	T
SNP	98	459	NC_000913	1491105	T
SNP	99	460	NC_000913	1501974	T
SNP	100	461	NC_000913	1514985	T
SNP	101	462	NC_000913	1520526	T
SNP	102	463	NC_000913	1531318	T
SNP	103	464	NC_000913	1534321	T
SNP	104	465	NC_000913	1536304	T
SNP	105	466	NC_000913	1587323	T
SNP	106	467	NC_000913	1597364	C
SNP	107	468	NC_000913	1626475	T
SNP	108	469	NC_000913	1643679	T
SNP	109	470	NC_000913	1652331	C
SNP	110	471	NC_000913	1715661	T
SNP	111	472	NC_000913	1738631	C
SNP	112	473	NC_000913	1743164	T
SNP	113	474	NC_000913	1776100	A
SNP	114	475	NC_000913	1786965	T
SNP	115	476	NC_000913	1790949	T
SNP	116	477	NC_000913	1791057	T
SNP	117	478	NC_000913	1795562	T
SNP	118	479	NC_000913	1798171	T
SNP	119	480	NC_000913	1812346	T
SNP	120	481	NC_000913	1828654	T
SNP	121	482	NC_000913	1844146	T
SNP	122	483	NC_000913	1847969	T
SNP	123	484	NC_000913	1853057	T
SNP	124	485	NC_000913	1853977	T
SNP	125	486	NC_000913	1866420	T
SNP	126	487	NC_000913	1876099	T
SNP	127	488	NC_000913	1878855	T
SNP	128	489	NC_000913	1881623	T
SNP	129	490	NC_000913	1894839	C
SNP	130	491	NC_000913	1906796	T
MOB	131	781,782	NC_000913	1909925	IS5	1	4
SNP	132	492	NC_000913	1940095	T
SNP	133	493	NC_000913	1948824	T
SNP	134	494	NC_000913	1955010	A
SNP	135	495	NC_000913	1969982	T
DEL	136	755,783	NC_000913	1978503	776
SNP	137	496	NC_000913	1994637	G
SNP	138	497	NC_000913	2033271	T
SNP	139	498	NC_000913	2040289	T
SNP	140	499	NC_000913	2040433	A
SNP	141	500	NC_000913	2041411	A
SNP	142	501	NC_000913	2046506	T
SNP	143	502	NC_000913	2064246	T
SNP	144	503	NC_000913	2064616	T
SNP	145	504	NC_000913	2080405	T
SNP	146	505	NC_000913	2082863	T
SNP	147	506	NC_000913	2083929	T
SNP	148	507	NC_000913	2084330	T
SNP	149	508	NC_000913	2085319	A
SNP	150	509	NC_000913	2086634	A
SNP	151	510	NC_000913	2103891	A
DEL	152	511	NC_000913	2111259	1
SNP	153	512	NC_000913	2122908	A
SNP	154	513	NC_000913	2134498	A
SNP	155	514	NC_000913	2137543	A
DEL	156	515,516	NC_000913	2173363	2
SNP	157	517	NC_000913	2173448	T
MOB	158	785,786	NC_000913	2174359	IS5	1	4
SNP	159	518	NC_000913	2188087	C
SUB	160	519,520	NC_000913	2304522	2	TC
SNP	161	521	NC_000913	2329209	G
SNP	162	522	NC_000913	2339162	T
SNP	163	523	NC_000913	2384808	T
SNP	164	524	NC_000913	2410419	A
SNP	165	525	NC_000913	2484827	T
SNP	166	526	NC_000913	2510609	T
DEL	167	756,787	NC_000913	2558699	6790
SNP	168	527	NC_000913	2587112	T
SNP	169	528	NC_000913	2732992	A
SNP	170	529	NC_000913	2789286	A
SNP	171	530	NC_000913	2804133	T
DEL	172	531	NC_000913	2814459	1
SNP	173	532	NC_000913	2814461	T
SNP	174	533	NC_000913	2817197	A
SNP	175	534	NC_000913	2823288	T
SNP	176	535	NC_000913	2867454	A
SNP	177	536	NC_000913	2871153	G
DEL	178	757,788	NC_000913	2904103	61
SUB	179	537,538	NC_000913	2926543	2	TT
SNP	180	539	NC_000913	2926772	A
SNP	181	540	NC_000913	3028546	A
SNP	182	541	NC_000913	3050472	A
SNP	183	542	NC_000913	3061916	T
SNP	184	543	NC_000913	3065449	A
SNP	185	544	NC_000913	3065861	A
SNP	186	545	NC_000913	3089260	C
SNP	187	546	NC_000913	3090968	A
SNP	188	547	NC_000913	3104887	A
SNP	189	548	NC_000913	3120786	A
SNP	190	549	NC_000913	3121033	C
SNP	191	550	NC_000913	3127981	A
SNP	192	551	NC_000913	3130161	A
SNP	193	552	NC_000913	3132077	A
SNP	194	553	NC_000913	3133175	A
SNP	195	554	NC_000913	3134263	A
SNP	196	555	NC_000913	3145944	A
SNP	197	556	NC_000913	3150316	A
SNP	198	557	NC_000913	3162216	A
SNP	199	558	NC_000913	3176625	A
SNP	200	559	NC_000913	3179383	A
SNP	201	560	NC_000913	3186297	A
SNP	202	561	NC_000913	3193351	A
SNP	203	562	NC_000913	3204617	A
DEL	204	563	NC_000913	3207549	1
SNP	205	564	NC_000913	3219128	A
SNP	206	565	NC_000913	3224895	T
SNP	207	566	NC_000913	3227339	T
SNP	208	567	NC_000913	3240423	T
SNP	209	568	NC_000913	3256157	T
SNP	210	569	NC_000913	3259283	A
SNP	211	570	NC_000913	3270497	T
SNP	212	571	NC_000913	3275902	T
SNP	213	573	NC_000913	3292312	T
SNP	214	574	NC_000913	3304647	C
SNP	215	575	NC_000913	3329743	T
SNP	216	576	NC_000913	3388041	G
SNP	217	577	NC_000913	3474425	C
SNP	218	579	NC_000913	3506393	C
SNP	219	580	NC_000913	3518501	T
SNP	220	581	NC_000913	3524184	T
SNP	221	582	NC_000913	3558291	T
SNP	222	583	NC_000913	3559621	T
SNP	223	584	NC_000913	3560119	G
INS	224	585	NC_000913	3560455	G
SNP	225	586	NC_000913	3576313	G
SNP	226	587	NC_000913	3579050	A
SNP	227	588	NC_000913	3581316	A
SNP	228	589	NC_000913	3581850	A
SNP	229	590	NC_000913	3585517	A
SNP	230	591	NC_000913	3587531	A
SNP	231	592	NC_000913	3588787	A
SNP	232	593	NC_000913	3589956	A
SNP	233	594	NC_000913	3590251	T
SNP	234	595	NC_000913	3618836	T
SNP	235	596	NC_000913	3621090	T
SNP	236	597	NC_000913	3633749	T
SNP	237	598	NC_000913	3647677	T
SNP	238	599	NC_000913	3684443	T
SNP	239	600	NC_000913	3707947	A
SNP	240	601	NC_000913	3713979	T
SNP	241	602	NC_000913	3725176	G
SNP	242	603	NC_000913	3744369	T
SNP	243	604	NC_000913	3781049	T
SNP	244	605	NC_000913	3803453	T
SNP	245	606	NC_000913	3803945	T
SNP	246	607	NC_000913	3809942	T
INS	247	608	NC_000913	3815883	C
SNP	248	609	NC_000913	3827026	T
SNP	249	610	NC_000913	3829385	T
SNP	250	611	NC_000913	3834845	T
SNP	251	612	NC_000913	3850507	T
SNP	252	613	NC_000913	3870464	T
SNP	253	615	NC_000913	3900610	T
SNP	254	616	NC_000913	3904907	T
SNP	255	617	NC_000913	3914648	T
SNP	256	618	NC_000913	3926894	T
SNP	257	619	NC_000913	3927292	C
SNP	258	620	NC_000913	3937909	A
SNP	259	621	NC_000913	3937997	A
DEL	260	622	NC_000913	3938441	1
SNP	261	623	NC_000913	3941874	T
SNP	262	624	NC_000913	3946246	A
SNP	263	625	NC_000913	3950099	T
SNP	264	626	NC_000913	3956003	A
SNP	265	627	NC_000913	3992970	G
SNP	266	629	NC_000913	4084932	T
SNP	267	630	NC_000913	4128223	T
SNP	268	631	NC_000913	4139298	A
SNP	269	632	NC_000913	4154445	T
SNP	270	633	NC_000913	4160157	A
SNP	271	634	NC_000913	4171728	T
SNP	272	635	NC_000913	4175827	T
SNP	273	636	NC_000913	4178883	T
SNP	274	637	NC_000913	4179001	T
SNP	275	638	NC_000913	4185777	T
SNP	276	639	NC_000913	4193177	T
SNP	277	640	NC_000913	4193707	G
SNP	278	641	NC_000913	4193820	T
SNP	279	642	NC_000913	4219752	T
SNP	280	643	NC_000913	4222743	T
SNP	281	644	NC_000913	4223638	C
SNP	282	645	NC_000913	4224483	T
SNP	283	646	NC_000913	4234479	T
SNP	284	647	NC_000913	4249684	T
SNP	285	648	NC_000913	4265668	T
SNP	286	649	NC_000913	4269449	T
SNP	287	650	NC_000913	4271130	T
SNP	288	651	NC_000913	4278488	T
SNP	289	652	NC_000913	4282536	T
SNP	290	653	NC_000913	4284077	T
SNP	291	654	NC_000913	4286033	T
SNP	292	655	NC_000913	4296187	T
SNP	293	656	NC_000913	4296300	T
INS	294	657,658	NC_000913	4296381	GC
SNP	295	659	NC_000913	4297469	T
SNP	296	660	NC_000913	4298199	T
SNP	297	661	NC_000913	4301071	T
SNP	298	662	NC_000913	4303755	T
SNP	299	663	NC_000913	4311337	T
SNP	300	664	NC_000913	4320079	T
SNP	301	665	NC_000913	4320785	T
SNP	302	666	NC_000913	4322605	T
SNP	303	667	NC_000913	4325644	T
SNP	304	668	NC_000913	4325837	T
SNP	305	669	NC_000913	4332310	T
SNP	306	670	NC_000913	4337864	T
SNP	307	671	NC_000913	4342825	T
SNP	308	672	NC_000913	4349259	T
SNP	309	673	NC_000913	4351519	T
SNP	310	674	NC_000913	4351590	T
SNP	311	675	NC_000913	4359909	T
SNP	312	676	NC_000913	4364798	T
SNP	313	677	NC_000913	4366668	T
SNP	314	678	NC_000913	4371401	T
SNP	315	679	NC_000913	4373421	T
SNP	316	680	NC_000913	4380469	T
SNP	317	681	NC_000913	4388120	T
SNP	318	682	NC_000913	4389838	T
SNP	319	683	NC_000913	4401607	T
SNP	320	684	NC_000913	4403010	T
SNP	321	685	NC_000913	4407045	T
SNP	322	686	NC_000913	4414625	T
SNP	323	687	NC_000913	4418862	T
SNP	324	688	NC_000913	4426929	T
SNP	325	690	NC_000913	4433459	T
MOB	326	784,789	NC_000913	4434629	IS1	-1	8
SNP	327	691	NC_000913	4435124	T
SNP	328	692	NC_000913	4435750	T
SNP	329	693	NC_000913	4451280	T
SNP	330	694	NC_000913	4457392	T
SNP	331	695	NC_000913	4482901	T
SNP	332	696	NC_000913	4486869	A
SNP	333	697	NC_000913	4487022	T
SNP	334	698	NC_000913	4489775	T
SNP	335	699	NC_000913	4494499	T
SNP	336	700	NC_000913	4501500	T
SNP	337	702	NC_000913	4510238	G
SNP	338	703	NC_000913	4517355	T
SNP	339	704	NC_000913	4524401	T
SNP	340	705	NC_000913	4524596	T
SNP	341	706	NC_000913	4529039	T
SNP	342	707	NC_000913	4530797	T
SNP	343	708	NC_000913	4541261	T
MOB	344	790,791	NC_000913	4542042	IS1	1	8
SNP	345	709	NC_000913	4553671	T
SNP	346	710	NC_000913	4564385	T
SNP	347	711	NC_000913	4570550	T
SNP	348	712	NC_000913	4571280	T
SNP	349	713	NC_000913	4585673	T
SNP	350	714	NC_000913	4587365	T
SNP	351	715	NC_000913	4604517	T
SNP	352	716	NC_000913	4630295	T
SNP	353	717	NC_000913	4636925	C
SNP	354	718	NC_000913	4638058	T
SNP	355	719	NC_000913	4638240	A
RA	356	.	NC_000913	1903	0	G	A	bias_e_value=3899270	bias_p_value=0.840061	consensus_score=189.5	fisher_strand_p_value=0.491803	frequency=1	ks_quality_p_value=0.997817	major_base=A	major_cov=29/31	major_frequency=9.836e-01	minor_base=C	minor_cov=1/0	new_cov=29/31	polymorphism_frequency=9.836e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=31/32
RA	357	.	NC_000913	10696	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=149.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999114	major_base=T	major_cov=26/21	major_frequency=9.792e-01	minor_base=A	minor_cov=1/0	new_cov=26/21	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	358	.	NC_000913	23501	0	C	T	bias_e_value=4641340	bias_p_value=0.999932	consensus_score=324.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.988347	major_base=T	major_cov=50/54	major_frequency=9.905e-01	minor_base=G	minor_cov=0/1	new_cov=50/54	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/55
RA	359	.	NC_000913	31683	0	C	T	consensus_score=164.2	frequency=1	major_base=T	major_cov=23/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/34
RA	360	.	NC_000913	42108	0	G	A	consensus_score=90.5	frequency=1	major_base=A	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	361	.	NC_000913	59968	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=180.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/29	major_frequency=9.672e-01	minor_base=C	minor_cov=1/1	new_cov=30/29	polymorphism_frequency=9.672e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/1	total_cov=31/30
RA	362	.	NC_000913	76249	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=211.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/34	major_frequency=9.848e-01	minor_base=T	minor_cov=0/1	new_cov=31/34	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/35
RA	363	.	NC_000913	88571	0	G	A	bias_e_value=3972410	bias_p_value=0.855818	consensus_score=204.8	fisher_strand_p_value=0.517865	frequency=1	ks_quality_p_value=0.991768	major_base=A	major_cov=39/26	major_frequency=9.701e-01	minor_base=G	minor_cov=2/0	new_cov=39/26	polymorphism_frequency=9.701e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=2/0	total_cov=42/26
RA	364	.	NC_000913	113695	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=121.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=23/20	major_frequency=9.773e-01	minor_base=C	minor_cov=1/0	new_cov=23/20	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=25/21
RA	365	.	NC_000913	119396	0	C	T	bias_e_value=0.466565	bias_p_value=1.00517e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.5	fisher_strand_p_value=4.99727e-09	frequency=2.549e-01	ks_quality_p_value=1	major_base=C	major_cov=4/34	major_frequency=7.451e-01	minor_base=T	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.549e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=4/34	total_cov=18/34
RA	366	.	NC_000913	156068	0	A	G	consensus_score=160.0	frequency=1	major_base=G	major_cov=17/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/30
RA	367	.	NC_000913	157585	0	C	T	bias_e_value=4641530	bias_p_value=0.999974	consensus_score=172.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992762	major_base=T	major_cov=33/23	major_frequency=9.492e-01	minor_base=C	minor_cov=2/1	new_cov=33/23	polymorphism_frequency=9.492e-01	polymorphism_score=-3.0	prediction=consensus	ref_cov=2/1	total_cov=35/24
RA	368	.	NC_000913	224625	0	T	A	bias_e_value=3762590	bias_p_value=0.810613	consensus_score=80.8	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/13	major_frequency=9.677e-01	minor_base=T	minor_cov=0/1	new_cov=17/13	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/14
RA	369	.	NC_000913	466148	0	G	A	bias_e_value=3674790	bias_p_value=0.791699	consensus_score=104.1	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=14/20	major_frequency=9.714e-01	minor_base=G	minor_cov=1/0	new_cov=14/20	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=15/20
RA	370	.	NC_000913	469271	0	G	A	bias_e_value=1839320	bias_p_value=0.396265	consensus_score=169.9	fisher_strand_p_value=0.130508	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/38	major_frequency=9.667e-01	minor_base=G	minor_cov=2/0	new_cov=20/38	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=22/40
RA	371	.	NC_000913	480295	0	G	A	bias_e_value=4641520	bias_p_value=0.999971	consensus_score=101.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.992453	major_base=A	major_cov=16/16	major_frequency=9.697e-01	minor_base=T	minor_cov=1/0	new_cov=16/16	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	372	.	NC_000913	480296	0	G	A	consensus_score=104.4	frequency=1	major_base=A	major_cov=17/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/16
RA	373	.	NC_000913	502232	0	G	A	consensus_score=139.4	frequency=1	major_base=A	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	374	.	NC_000913	566155	0	T	C	consensus_score=22.3	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	375	.	NC_000913	566176	0	C	T	consensus_score=19.7	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	376	.	NC_000913	566181	0	C	T	consensus_score=19.7	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	377	.	NC_000913	566182	0	A	G	consensus_score=26.3	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	378	.	NC_000913	566186	0	C	.	consensus_score=31.4	frequency=1	major_base=.	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	379	.	NC_000913	566189	1	.	G	consensus_score=14.3	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	380	.	NC_000913	566190	0	C	A	consensus_score=12.4	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	381	.	NC_000913	566199	0	T	G	consensus_score=25.5	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	382	.	NC_000913	566200	0	T	A	consensus_score=17.8	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	383	.	NC_000913	566201	0	T	G	consensus_score=26.3	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	384	.	NC_000913	566202	0	C	G	consensus_score=23.2	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	385	.	NC_000913	566205	0	T	C	consensus_score=19.8	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	386	.	NC_000913	566214	0	T	C	consensus_score=22.5	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	387	.	NC_000913	566215	0	C	G	consensus_score=22.4	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	388	.	NC_000913	566221	0	A	G	consensus_score=22.0	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	389	.	NC_000913	566223	0	A	G	consensus_score=23.2	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	390	.	NC_000913	566224	0	A	G	consensus_score=22.5	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	391	.	NC_000913	566227	0	C	A	consensus_score=19.4	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	392	.	NC_000913	566229	0	G	T	consensus_score=20.8	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	393	.	NC_000913	566236	0	A	G	consensus_score=25.9	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	394	.	NC_000913	566239	0	C	T	consensus_score=22.4	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	395	.	NC_000913	566254	0	A	G	consensus_score=22.5	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	396	.	NC_000913	566260	0	G	T	consensus_score=22.9	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	397	.	NC_000913	566267	0	T	A	consensus_score=18.1	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	398	.	NC_000913	566272	0	G	T	consensus_score=19.7	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	399	.	NC_000913	566275	0	A	G	consensus_score=25.4	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	400	.	NC_000913	566283	0	G	C	consensus_score=23.6	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	401	.	NC_000913	566284	0	C	G	consensus_score=19.8	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	402	.	NC_000913	566320	0	A	C	consensus_score=20.7	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	403	.	NC_000913	566323	0	C	A	consensus_score=14.8	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	404	.	NC_000913	566326	0	T	C	consensus_score=14.5	frequency=1	major_base=C	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	405	.	NC_000913	566329	0	T	G	consensus_score=19.0	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	406	.	NC_000913	566332	0	T	G	consensus_score=19.6	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	407	.	NC_000913	566335	0	C	T	consensus_score=20.1	frequency=1	major_base=T	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	408	.	NC_000913	566344	0	A	G	consensus_score=14.8	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	409	.	NC_000913	566347	0	G	A	consensus_score=19.2	frequency=1	major_base=A	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	410	.	NC_000913	566350	0	C	G	consensus_score=18.5	frequency=1	major_base=G	major_cov=6/2	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/2	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/2
RA	411	.	NC_000913	581404	0	C	G	bias_e_value=679693	bias_p_value=0.146433	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.7	fisher_strand_p_value=0.0562869	frequency=2.105e-01	ks_quality_p_value=0.590778	major_base=C	major_cov=26/19	major_frequency=7.895e-01	minor_base=G	minor_cov=3/9	new_cov=3/9	polymorphism_frequency=2.105e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=26/19	total_cov=29/29
RA	412	.	NC_000913	581416	0	A	G	bias_e_value=794060	bias_p_value=0.171073	consensus_reject=FREQUENCY_CUTOFF	consensus_score=97.9	fisher_strand_p_value=0.101075	frequency=2.000e-01	ks_quality_p_value=0.40289	major_base=A	major_cov=25/19	major_frequency=8.000e-01	minor_base=G	minor_cov=3/8	new_cov=3/8	polymorphism_frequency=2.000e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=25/19	total_cov=28/29
RA	413	.	NC_000913	662269	0	C	T	consensus_score=79.5	frequency=1	major_base=T	major_cov=10/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/16
RA	414	.	NC_000913	696470	0	C	T	consensus_score=97.2	frequency=1	major_base=T	major_cov=12/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	415	.	NC_000913	784677	0	G	A	bias_e_value=3709480	bias_p_value=0.799172	consensus_score=160.4	fisher_strand_p_value=0.4375	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=20/27	major_frequency=9.792e-01	minor_base=C	minor_cov=1/0	new_cov=20/27	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/27
RA	416	.	NC_000913	881531	0	A	T	bias_e_value=3722550	bias_p_value=0.801988	consensus_score=99.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.440923	major_base=T	major_cov=18/16	major_frequency=8.947e-01	minor_base=A	minor_cov=2/2	new_cov=18/16	polymorphism_frequency=8.947e-01	polymorphism_score=2.8	prediction=consensus	ref_cov=2/2	total_cov=20/18
RA	417	.	NC_000913	1015891	0	C	T	consensus_score=88.6	frequency=1	major_base=T	major_cov=11/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/16
RA	418	.	NC_000913	1137212	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=131.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/33	major_frequency=9.574e-01	minor_base=C	minor_cov=0/2	new_cov=12/33	polymorphism_frequency=9.574e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=0/2	total_cov=12/35
RA	419	.	NC_000913	1138130	0	C	T	bias_e_value=1509080	bias_p_value=0.325117	consensus_score=59.2	fisher_strand_p_value=0.0977778	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/10	major_frequency=8.571e-01	minor_base=C	minor_cov=0/4	new_cov=14/10	polymorphism_frequency=8.571e-01	polymorphism_score=-5.4	prediction=consensus	ref_cov=0/4	total_cov=14/14
RA	420	.	NC_000913	1147196	0	C	T	bias_e_value=2919620	bias_p_value=0.629005	consensus_score=154.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.274214	major_base=T	major_cov=23/27	major_frequency=9.615e-01	minor_base=C	minor_cov=1/1	new_cov=23/27	polymorphism_frequency=9.615e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=24/28
RA	421	.	NC_000913	1156913	0	G	A	bias_e_value=3659030	bias_p_value=0.788304	consensus_score=90.0	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=0.934091	major_base=A	major_cov=14/18	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=14/18	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/19
RA	422	.	NC_000913	1169836	0	A	G	bias_e_value=3794330	bias_p_value=0.817453	consensus_score=107.7	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=0.982018	major_base=G	major_cov=14/17	major_frequency=9.688e-01	minor_base=T	minor_cov=1/0	new_cov=14/17	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/17
RA	423	.	NC_000913	1174883	0	C	T	bias_e_value=4640990	bias_p_value=0.999856	consensus_score=85.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.983099	major_base=T	major_cov=12/20	major_frequency=9.697e-01	minor_base=G	minor_cov=0/1	new_cov=12/20	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=12/22
RA	424	.	NC_000913	1175517	0	A	G	bias_e_value=4423860	bias_p_value=0.953079	consensus_score=137.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.70974	major_base=G	major_cov=22/18	major_frequency=9.524e-01	minor_base=A	minor_cov=1/1	new_cov=22/18	polymorphism_frequency=9.524e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=23/20
RA	425	.	NC_000913	1188861	0	C	T	bias_e_value=4625300	bias_p_value=0.996478	consensus_score=104.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.917255	major_base=T	major_cov=27/11	major_frequency=9.744e-01	minor_base=C	minor_cov=1/0	new_cov=27/11	polymorphism_frequency=9.744e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=1/0	total_cov=28/11
RA	426	.	NC_000913	1189980	0	A	G	consensus_score=118.0	frequency=1	major_base=G	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	427	.	NC_000913	1191644	0	C	T	bias_e_value=4640780	bias_p_value=0.999812	consensus_score=124.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.980677	major_base=T	major_cov=21/19	major_frequency=9.756e-01	minor_base=A	minor_cov=1/0	new_cov=21/19	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/19
RA	428	.	NC_000913	1197637	0	C	T	consensus_score=40.4	frequency=1	major_base=T	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	429	.	NC_000913	1235755	0	C	T	bias_e_value=4597680	bias_p_value=0.990528	consensus_score=97.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.865554	major_base=T	major_cov=16/17	major_frequency=9.706e-01	minor_base=C	minor_cov=0/1	new_cov=16/17	polymorphism_frequency=9.706e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=16/18
RA	430	.	NC_000913	1239343	0	C	T	bias_e_value=2061640	bias_p_value=0.444161	consensus_score=154.6	fisher_strand_p_value=0.155102	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=30/18	major_frequency=9.600e-01	minor_base=G	minor_cov=0/2	new_cov=30/18	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=32/20
RA	431	.	NC_000913	1250264	0	C	T	bias_e_value=1691470	bias_p_value=0.364411	consensus_score=147.1	fisher_strand_p_value=0.115318	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/26	major_frequency=9.286e-01	minor_base=G	minor_cov=0/4	new_cov=26/26	polymorphism_frequency=9.286e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/32
RA	432	.	NC_000913	1257135	0	C	T	bias_e_value=3570150	bias_p_value=0.769154	consensus_score=144.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.40289	major_base=T	major_cov=25/19	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=25/19	polymorphism_frequency=9.778e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=27/19
RA	433	.	NC_000913	1268367	0	C	T	bias_e_value=3975490	bias_p_value=0.856482	consensus_score=84.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.514599	major_base=T	major_cov=15/14	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=0/1	total_cov=15/15
RA	434	.	NC_000913	1269702	0	C	T	bias_e_value=4638660	bias_p_value=0.999355	consensus_score=54.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96429	major_base=T	major_cov=10/10	major_frequency=9.091e-01	minor_base=C	minor_cov=1/1	new_cov=10/10	polymorphism_frequency=9.091e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/1	total_cov=11/12
RA	435	.	NC_000913	1282627	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=69.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=6/19	major_frequency=8.929e-01	minor_base=A	minor_cov=1/2	new_cov=6/19	polymorphism_frequency=8.929e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=2/0	total_cov=9/21
RA	436	.	NC_000913	1290669	0	G	A	bias_e_value=4322570	bias_p_value=0.931256	consensus_score=53.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.65291	major_base=A	major_cov=15/4	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=15/4	polymorphism_frequency=9.500e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/0	total_cov=16/4
RA	437	.	NC_000913	1301992	0	A	T	bias_e_value=3900210	bias_p_value=0.840264	consensus_score=110.9	fisher_strand_p_value=0.492308	frequency=1	ks_quality_p_value=0.997372	major_base=T	major_cov=20/18	major_frequency=9.500e-01	minor_base=A	minor_cov=2/0	new_cov=20/18	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=22/18
RA	438	.	NC_000913	1306736	0	T	G	consensus_score=86.6	frequency=1	major_base=G	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	439	.	NC_000913	1310770	0	A	G	consensus_score=98.9	frequency=1	major_base=G	major_cov=14/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/13
RA	440	.	NC_000913	1321672	0	C	T	consensus_score=185.5	frequency=1	major_base=T	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	441	.	NC_000913	1322759	0	G	A	consensus_score=109.6	frequency=1	major_base=A	major_cov=18/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/17
RA	442	.	NC_000913	1335123	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=22.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=5/5	major_frequency=8.333e-01	minor_base=C	minor_cov=1/1	new_cov=5/5	polymorphism_frequency=8.333e-01	polymorphism_score=-2.8	prediction=consensus	ref_cov=1/1	total_cov=6/6
RA	443	.	NC_000913	1336353	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=147.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/23	major_frequency=9.245e-01	minor_base=C	minor_cov=2/2	new_cov=26/23	polymorphism_frequency=9.245e-01	polymorphism_score=1.1	prediction=consensus	ref_cov=2/2	total_cov=29/25
RA	444	.	NC_000913	1337394	0	A	G	bias_e_value=4001490	bias_p_value=0.862084	consensus_score=164.6	fisher_strand_p_value=0.523137	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=19/30	major_frequency=9.608e-01	minor_base=T	minor_cov=0/2	new_cov=19/30	polymorphism_frequency=9.608e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/32
RA	445	.	NC_000913	1358859	0	T	C	bias_e_value=4628840	bias_p_value=0.997241	consensus_score=53.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.92664	major_base=C	major_cov=10/10	major_frequency=9.524e-01	minor_base=A	minor_cov=1/0	new_cov=10/10	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/10
RA	446	.	NC_000913	1384652	0	A	G	consensus_score=72.0	frequency=1	major_base=G	major_cov=11/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	447	.	NC_000913	1387908	0	C	T	bias_e_value=3929210	bias_p_value=0.846511	consensus_score=157.0	fisher_strand_p_value=0.503546	frequency=1	ks_quality_p_value=0.99278	major_base=T	major_cov=20/26	major_frequency=9.583e-01	minor_base=G	minor_cov=0/2	new_cov=20/26	polymorphism_frequency=9.583e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/28
RA	448	.	NC_000913	1395566	0	C	T	bias_e_value=3824510	bias_p_value=0.823954	consensus_score=57.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.468802	major_base=T	major_cov=11/11	major_frequency=9.167e-01	minor_base=C	minor_cov=1/1	new_cov=11/11	polymorphism_frequency=9.167e-01	polymorphism_score=-1.2	prediction=consensus	ref_cov=1/1	total_cov=13/12
RA	449	.	NC_000913	1399069	0	C	T	bias_e_value=3757670	bias_p_value=0.809555	consensus_score=124.4	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.995365	major_base=T	major_cov=23/18	major_frequency=9.762e-01	minor_base=G	minor_cov=0/1	new_cov=23/18	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	450	.	NC_000913	1401893	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=148.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999034	major_base=A	major_cov=26/19	major_frequency=9.783e-01	minor_base=C	minor_cov=1/0	new_cov=26/19	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/20
RA	451	.	NC_000913	1405569	0	C	T	consensus_score=65.5	frequency=1	major_base=T	major_cov=14/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/9
RA	452	.	NC_000913	1418807	0	C	T	consensus_score=34.5	frequency=1	major_base=T	major_cov=7/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/6
RA	453	.	NC_000913	1419414	0	C	T	bias_e_value=3824330	bias_p_value=0.823915	consensus_score=91.9	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/14	major_frequency=9.688e-01	minor_base=C	minor_cov=0/1	new_cov=17/14	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/16
RA	454	.	NC_000913	1428107	0	C	T	bias_e_value=2468200	bias_p_value=0.53175	consensus_score=125.3	fisher_strand_p_value=0.206531	frequency=1	ks_quality_p_value=0.998335	major_base=T	major_cov=27/21	major_frequency=9.600e-01	minor_base=G	minor_cov=0/2	new_cov=27/21	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/23
RA	455	.	NC_000913	1430310	0	C	T	bias_e_value=4294720	bias_p_value=0.925256	consensus_score=170.3	fisher_strand_p_value=0.639177	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/34	major_frequency=9.322e-01	minor_base=G	minor_cov=2/2	new_cov=21/34	polymorphism_frequency=9.322e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/36
RA	456	.	NC_000913	1441765	0	C	T	consensus_score=88.8	frequency=1	major_base=T	major_cov=14/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/16
RA	457	.	NC_000913	1453992	0	G	A	bias_e_value=4111920	bias_p_value=0.885875	consensus_score=52.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.562035	major_base=A	major_cov=10/10	major_frequency=9.524e-01	minor_base=G	minor_cov=0/1	new_cov=10/10	polymorphism_frequency=9.524e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=10/11
RA	458	.	NC_000913	1460345	0	C	T	bias_e_value=3810670	bias_p_value=0.820974	consensus_score=147.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.464889	major_base=T	major_cov=26/21	major_frequency=9.592e-01	minor_base=C	minor_cov=1/1	new_cov=26/21	polymorphism_frequency=9.592e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/1	total_cov=28/24
RA	459	.	NC_000913	1491105	0	C	T	consensus_score=81.8	frequency=1	major_base=T	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	460	.	NC_000913	1501974	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=70.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=8/18	major_frequency=9.630e-01	minor_base=C	minor_cov=0/1	new_cov=8/18	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=8/20
RA	461	.	NC_000913	1514985	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=68.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/15	major_frequency=9.667e-01	minor_base=G	minor_cov=1/0	new_cov=14/15	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/16
RA	462	.	NC_000913	1520526	0	C	T	consensus_score=61.8	frequency=1	major_base=T	major_cov=13/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/8
RA	463	.	NC_000913	1531318	0	C	T	bias_e_value=4630360	bias_p_value=0.997567	consensus_score=36.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.931063	major_base=T	major_cov=10/4	major_frequency=8.750e-01	minor_base=C	minor_cov=1/1	new_cov=10/4	polymorphism_frequency=8.750e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=1/1	total_cov=11/5
RA	464	.	NC_000913	1534321	0	C	T	bias_e_value=4573260	bias_p_value=0.985266	consensus_score=69.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.833321	major_base=T	major_cov=6/20	major_frequency=9.630e-01	minor_base=C	minor_cov=0/1	new_cov=6/20	polymorphism_frequency=9.630e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/1	total_cov=6/21
RA	465	.	NC_000913	1536304	0	C	T	bias_e_value=2593050	bias_p_value=0.558648	consensus_score=96.9	fisher_strand_p_value=0.243697	frequency=1	ks_quality_p_value=0.917856	major_base=T	major_cov=15/17	major_frequency=9.143e-01	minor_base=G	minor_cov=0/3	new_cov=15/17	polymorphism_frequency=9.143e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	466	.	NC_000913	1587323	0	C	T	consensus_score=63.5	frequency=1	major_base=T	major_cov=12/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/11
RA	467	.	NC_000913	1597364	0	T	C	consensus_score=74.8	frequency=1	major_base=C	major_cov=8/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/15
RA	468	.	NC_000913	1626475	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=37.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/1	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=14/1	polymorphism_frequency=9.375e-01	polymorphism_score=-5.5	prediction=consensus	ref_cov=1/0	total_cov=16/1
RA	469	.	NC_000913	1643679	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=174.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/29	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=23/29	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/30
RA	470	.	NC_000913	1652331	0	T	C	consensus_score=52.5	frequency=1	major_base=C	major_cov=8/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/9
RA	471	.	NC_000913	1715661	0	C	T	bias_e_value=3248800	bias_p_value=0.699922	consensus_score=132.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.333684	major_base=T	major_cov=23/17	major_frequency=9.756e-01	minor_base=C	minor_cov=1/0	new_cov=23/17	polymorphism_frequency=9.756e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=24/18
RA	472	.	NC_000913	1738631	0	T	C	bias_e_value=4610270	bias_p_value=0.99324	consensus_score=135.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.885998	major_base=C	major_cov=22/23	major_frequency=9.574e-01	minor_base=T	minor_cov=1/1	new_cov=22/23	polymorphism_frequency=9.574e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/1	total_cov=23/24
RA	473	.	NC_000913	1743164	0	C	T	consensus_score=122.6	frequency=1	major_base=T	major_cov=20/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/20
RA	474	.	NC_000913	1776100	0	G	A	bias_e_value=3632480	bias_p_value=0.782583	consensus_score=90.3	fisher_strand_p_value=0.451613	frequency=1	ks_quality_p_value=0.925502	major_base=A	major_cov=13/17	major_frequency=9.677e-01	minor_base=C	minor_cov=1/0	new_cov=13/17	polymorphism_frequency=9.677e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/17
RA	475	.	NC_000913	1786965	0	C	T	bias_e_value=31994.7	bias_p_value=0.00689296	consensus_score=74.9	fisher_strand_p_value=0.000854701	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=2/21	major_frequency=8.519e-01	minor_base=G	minor_cov=4/0	new_cov=2/21	polymorphism_frequency=8.519e-01	polymorphism_score=-5.0	prediction=consensus	ref_cov=0/0	total_cov=6/21
RA	476	.	NC_000913	1790949	0	C	T	bias_e_value=3596090	bias_p_value=0.774744	consensus_score=126.0	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/26	major_frequency=9.773e-01	minor_base=C	minor_cov=1/0	new_cov=17/26	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=18/27
RA	477	.	NC_000913	1791057	0	C	T	bias_e_value=3898040	bias_p_value=0.839797	consensus_score=89.1	fisher_strand_p_value=0.505882	frequency=1	ks_quality_p_value=0.969312	major_base=T	major_cov=14/19	major_frequency=9.429e-01	minor_base=G	minor_cov=0/2	new_cov=14/19	polymorphism_frequency=9.429e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/22
RA	478	.	NC_000913	1795562	0	C	T	bias_e_value=3322600	bias_p_value=0.715822	consensus_score=65.7	fisher_strand_p_value=0.49	frequency=1	ks_quality_p_value=0.711152	major_base=T	major_cov=17/6	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=17/6	polymorphism_frequency=9.200e-01	polymorphism_score=-0.3	prediction=consensus	ref_cov=1/1	total_cov=18/7
RA	479	.	NC_000913	1798171	0	C	T	bias_e_value=4416480	bias_p_value=0.951488	consensus_score=131.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.705143	major_base=T	major_cov=22/21	major_frequency=9.556e-01	minor_base=C	minor_cov=1/1	new_cov=22/21	polymorphism_frequency=9.556e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=23/23
RA	480	.	NC_000913	1812346	0	C	T	bias_e_value=3531910	bias_p_value=0.760917	consensus_score=106.6	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/20	major_frequency=9.697e-01	minor_base=G	minor_cov=1/0	new_cov=12/20	polymorphism_frequency=9.697e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/20
RA	481	.	NC_000913	1828654	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=118.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/11	major_frequency=9.773e-01	minor_base=G	minor_cov=1/0	new_cov=32/11	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/11
RA	482	.	NC_000913	1844146	0	C	T	bias_e_value=4626610	bias_p_value=0.996759	consensus_score=91.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920573	major_base=T	major_cov=15/14	major_frequency=9.667e-01	minor_base=C	minor_cov=0/1	new_cov=15/14	polymorphism_frequency=9.667e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/1	total_cov=15/15
RA	483	.	NC_000913	1847969	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=88.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/11	major_frequency=9.655e-01	minor_base=C	minor_cov=1/0	new_cov=17/11	polymorphism_frequency=9.655e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=1/0	total_cov=18/11
RA	484	.	NC_000913	1853057	0	C	T	bias_e_value=3889170	bias_p_value=0.837884	consensus_score=79.9	fisher_strand_p_value=0.487685	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/13	major_frequency=9.310e-01	minor_base=A	minor_cov=2/0	new_cov=14/13	polymorphism_frequency=9.310e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=16/14
RA	485	.	NC_000913	1853977	0	C	T	bias_e_value=4599700	bias_p_value=0.990962	consensus_score=65.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.868603	major_base=T	major_cov=13/10	major_frequency=9.200e-01	minor_base=C	minor_cov=1/1	new_cov=13/10	polymorphism_frequency=9.200e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/1	total_cov=14/11
RA	486	.	NC_000913	1866420	0	C	T	bias_e_value=4641600	bias_p_value=0.999989	consensus_score=57.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995249	major_base=T	major_cov=8/12	major_frequency=9.524e-01	minor_base=C	minor_cov=0/1	new_cov=8/12	polymorphism_frequency=9.524e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=8/13
RA	487	.	NC_000913	1876099	0	C	T	bias_e_value=1856470	bias_p_value=0.399959	consensus_score=92.3	fisher_strand_p_value=0.393939	frequency=1	ks_quality_p_value=0.335911	major_base=T	major_cov=12/20	major_frequency=9.697e-01	minor_base=C	minor_cov=1/0	new_cov=12/20	polymorphism_frequency=9.697e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=13/20
RA	488	.	NC_000913	1878855	0	C	T	consensus_score=46.2	frequency=1	major_base=T	major_cov=9/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/8
RA	489	.	NC_000913	1881623	0	C	T	bias_e_value=4576440	bias_p_value=0.985951	consensus_score=136.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.837128	major_base=T	major_cov=19/26	major_frequency=9.375e-01	minor_base=C	minor_cov=1/2	new_cov=19/26	polymorphism_frequency=9.375e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=1/2	total_cov=20/31
RA	490	.	NC_000913	1894839	0	T	C	consensus_score=72.8	frequency=1	major_base=C	major_cov=9/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/12
RA	491	.	NC_000913	1906796	0	C	T	bias_e_value=4638030	bias_p_value=0.99922	consensus_score=141.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.960774	major_base=T	major_cov=18/31	major_frequency=9.608e-01	minor_base=G	minor_cov=1/1	new_cov=18/31	polymorphism_frequency=9.608e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=20/33
RA	492	.	NC_000913	1940095	0	C	T	bias_e_value=3876450	bias_p_value=0.835144	consensus_score=139.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.483889	major_base=T	major_cov=20/21	major_frequency=9.762e-01	minor_base=C	minor_cov=0/1	new_cov=20/21	polymorphism_frequency=9.762e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=0/1	total_cov=20/22
RA	493	.	NC_000913	1948824	0	C	T	bias_e_value=3594890	bias_p_value=0.774484	consensus_score=169.9	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.880494	major_base=T	major_cov=25/30	major_frequency=9.821e-01	minor_base=C	minor_cov=1/0	new_cov=25/30	polymorphism_frequency=9.821e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=26/31
RA	494	.	NC_000913	1955010	0	G	A	consensus_score=96.6	frequency=1	major_base=A	major_cov=17/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/14
RA	495	.	NC_000913	1969982	0	C	T	bias_e_value=4098980	bias_p_value=0.883087	consensus_score=165.3	fisher_strand_p_value=0.557233	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/20	major_frequency=9.455e-01	minor_base=G	minor_cov=1/2	new_cov=32/20	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=34/23
RA	496	.	NC_000913	1994637	0	A	G	consensus_score=140.9	frequency=1	major_base=G	major_cov=21/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/19
RA	497	.	NC_000913	2033271	0	C	T	consensus_score=75.0	frequency=1	major_base=T	major_cov=12/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/15
RA	498	.	NC_000913	2040289	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=78.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=14/11	major_frequency=9.615e-01	minor_base=A	minor_cov=1/0	new_cov=14/11	polymorphism_frequency=9.615e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/11
RA	499	.	NC_000913	2040433	0	C	A	bias_e_value=3621330	bias_p_value=0.780182	consensus_score=109.4	fisher_strand_p_value=0.435897	frequency=1	ks_quality_p_value=0.952578	major_base=A	major_cov=22/16	major_frequency=9.744e-01	minor_base=T	minor_cov=0/1	new_cov=22/16	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/17
RA	500	.	NC_000913	2041411	0	G	A	consensus_score=53.3	frequency=1	major_base=A	major_cov=10/8	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/8	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/8
RA	501	.	NC_000913	2046506	0	G	T	consensus_score=105.0	frequency=1	major_base=T	major_cov=26/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/10
RA	502	.	NC_000913	2064246	0	C	T	bias_e_value=4227540	bias_p_value=0.910783	consensus_score=136.0	fisher_strand_p_value=0.608511	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=23/21	major_frequency=9.167e-01	minor_base=C	minor_cov=1/3	new_cov=23/21	polymorphism_frequency=9.167e-01	polymorphism_score=-1.1	prediction=consensus	ref_cov=1/3	total_cov=24/24
RA	503	.	NC_000913	2064616	0	C	T	bias_e_value=3889570	bias_p_value=0.837971	consensus_score=125.9	fisher_strand_p_value=0.487805	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=21/19	major_frequency=9.756e-01	minor_base=G	minor_cov=0/1	new_cov=21/19	polymorphism_frequency=9.756e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	504	.	NC_000913	2080405	0	C	T	bias_e_value=3701410	bias_p_value=0.797434	consensus_score=73.2	fisher_strand_p_value=0.486667	frequency=1	ks_quality_p_value=0.894666	major_base=T	major_cov=11/12	major_frequency=9.200e-01	minor_base=G	minor_cov=0/2	new_cov=11/12	polymorphism_frequency=9.200e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/14
RA	505	.	NC_000913	2082863	0	C	T	consensus_score=88.3	frequency=1	major_base=T	major_cov=19/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/9
RA	506	.	NC_000913	2083929	0	C	T	bias_e_value=3772070	bias_p_value=0.812656	consensus_score=84.8	fisher_strand_p_value=0.550802	frequency=1	ks_quality_p_value=0.8246	major_base=T	major_cov=12/20	major_frequency=9.143e-01	minor_base=C	minor_cov=2/1	new_cov=12/20	polymorphism_frequency=9.143e-01	polymorphism_score=-3.2	prediction=consensus	ref_cov=2/1	total_cov=15/21
RA	507	.	NC_000913	2084330	0	C	T	bias_e_value=1442070	bias_p_value=0.310679	consensus_score=70.6	fisher_strand_p_value=0.601173	frequency=1	ks_quality_p_value=0.152456	major_base=T	major_cov=15/14	major_frequency=8.788e-01	minor_base=C	minor_cov=1/3	new_cov=15/14	polymorphism_frequency=8.788e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=1/3	total_cov=16/17
RA	508	.	NC_000913	2085319	0	G	A	consensus_score=79.4	frequency=1	major_base=A	major_cov=14/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/12
RA	509	.	NC_000913	2086634	0	G	A	bias_e_value=3810300	bias_p_value=0.820894	consensus_score=142.6	fisher_strand_p_value=0.466667	frequency=1	ks_quality_p_value=0.995968	major_base=A	major_cov=20/24	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=20/24	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	510	.	NC_000913	2103891	0	G	A	consensus_score=42.6	frequency=1	major_base=A	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	511	.	NC_000913	2111259	0	G	.	bias_e_value=4641650	bias_p_value=1	consensus_score=138.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=18/14	major_frequency=9.697e-01	minor_base=G	minor_cov=1/0	new_cov=18/14	polymorphism_frequency=9.697e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=19/14
RA	512	.	NC_000913	2122908	0	G	A	consensus_score=149.6	frequency=1	major_base=A	major_cov=21/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/24
RA	513	.	NC_000913	2134498	0	G	A	consensus_score=147.4	frequency=1	major_base=A	major_cov=27/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/22
RA	514	.	NC_000913	2137543	0	G	A	bias_e_value=4638220	bias_p_value=0.99926	consensus_score=62.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.961788	major_base=A	major_cov=10/11	major_frequency=9.545e-01	minor_base=G	minor_cov=1/0	new_cov=10/11	polymorphism_frequency=9.545e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=11/11
RA	515	.	NC_000913	2173363	0	C	.	bias_e_value=3290090	bias_p_value=0.708819	consensus_score=104.5	fisher_strand_p_value=0.34188	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=21/4	major_frequency=9.259e-01	minor_base=C	minor_cov=1/1	new_cov=21/4	polymorphism_frequency=9.259e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=22/5
RA	516	.	NC_000913	2173364	0	C	.	bias_e_value=3290090	bias_p_value=0.708819	consensus_score=104.8	fisher_strand_p_value=0.34188	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=21/4	major_frequency=9.259e-01	minor_base=C	minor_cov=1/1	new_cov=21/4	polymorphism_frequency=9.259e-01	polymorphism_score=-0.2	prediction=consensus	ref_cov=1/1	total_cov=22/5
RA	517	.	NC_000913	2173448	0	C	T	bias_e_value=3644870	bias_p_value=0.785252	consensus_score=99.1	fisher_strand_p_value=0.424242	frequency=1	ks_quality_p_value=0.992453	major_base=T	major_cov=19/13	major_frequency=9.697e-01	minor_base=C	minor_cov=0/1	new_cov=19/13	polymorphism_frequency=9.697e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=0/1	total_cov=19/14
RA	518	.	NC_000913	2188087	0	T	C	bias_e_value=2354690	bias_p_value=0.507295	consensus_score=80.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.191059	major_base=C	major_cov=15/12	major_frequency=9.310e-01	minor_base=T	minor_cov=1/1	new_cov=15/12	polymorphism_frequency=9.310e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=1/1	total_cov=16/13
RA	519	.	NC_000913	2304522	0	G	T	bias_e_value=3295460	bias_p_value=0.709975	consensus_score=19.5	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.720215	major_base=T	major_cov=10/3	major_frequency=8.667e-01	minor_base=G	minor_cov=1/1	new_cov=10/3	polymorphism_frequency=8.667e-01	polymorphism_score=0.9	prediction=consensus	ref_cov=1/1	total_cov=11/4
RA	520	.	NC_000913	2304523	0	G	C	bias_e_value=3147520	bias_p_value=0.678104	consensus_score=23.0	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=0.660086	major_base=C	major_cov=10/3	major_frequency=8.667e-01	minor_base=G	minor_cov=1/1	new_cov=10/3	polymorphism_frequency=8.667e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=1/1	total_cov=11/4
RA	521	.	NC_000913	2329209	0	A	G	bias_e_value=4641190	bias_p_value=0.9999	consensus_score=149.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985916	major_base=G	major_cov=23/24	major_frequency=9.792e-01	minor_base=T	minor_cov=0/1	new_cov=23/24	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/25
RA	522	.	NC_000913	2339162	0	C	T	consensus_score=135.6	frequency=1	major_base=T	major_cov=24/22	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/22	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/22
RA	523	.	NC_000913	2384808	0	C	T	bias_e_value=4629010	bias_p_value=0.997277	consensus_score=124.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.92712	major_base=T	major_cov=26/13	major_frequency=9.512e-01	minor_base=C	minor_cov=1/1	new_cov=26/13	polymorphism_frequency=9.512e-01	polymorphism_score=-3.5	prediction=consensus	ref_cov=1/1	total_cov=28/15
RA	524	.	NC_000913	2410419	0	G	A	consensus_score=112.2	frequency=1	major_base=A	major_cov=17/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/18
RA	525	.	NC_000913	2484827	0	C	T	bias_e_value=3883160	bias_p_value=0.83659	consensus_score=95.3	fisher_strand_p_value=0.485887	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/15	major_frequency=9.375e-01	minor_base=G	minor_cov=0/2	new_cov=15/15	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=15/18
RA	526	.	NC_000913	2510609	0	C	T	bias_e_value=4641590	bias_p_value=0.999986	consensus_score=46.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.994751	major_base=T	major_cov=17/2	major_frequency=9.500e-01	minor_base=G	minor_cov=1/0	new_cov=17/2	polymorphism_frequency=9.500e-01	polymorphism_score=-6.6	prediction=consensus	ref_cov=0/0	total_cov=18/2
RA	527	.	NC_000913	2587112	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=140.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998401	major_base=T	major_cov=20/29	major_frequency=9.608e-01	minor_base=G	minor_cov=1/1	new_cov=20/29	polymorphism_frequency=9.608e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=23/31
RA	528	.	NC_000913	2732992	0	G	A	consensus_score=191.2	frequency=1	major_base=A	major_cov=35/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/26
RA	529	.	NC_000913	2789286	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=140.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/24	major_frequency=9.796e-01	minor_base=C	minor_cov=1/0	new_cov=24/24	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/24
RA	530	.	NC_000913	2804133	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=162.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=25/26	major_frequency=9.808e-01	minor_base=G	minor_cov=0/1	new_cov=25/26	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/27
RA	531	.	NC_000913	2814459	0	A	.	bias_e_value=3016850	bias_p_value=0.649952	consensus_score=187.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.290783	major_base=.	major_cov=21/23	major_frequency=9.565e-01	minor_base=A	minor_cov=1/1	new_cov=21/23	polymorphism_frequency=9.565e-01	polymorphism_score=5.0	prediction=consensus	ref_cov=1/1	total_cov=23/24
RA	532	.	NC_000913	2814461	0	C	T	bias_e_value=2603940	bias_p_value=0.560993	consensus_score=137.2	fisher_strand_p_value=0.234043	frequency=1	ks_quality_p_value=0.962426	major_base=T	major_cov=21/24	major_frequency=9.574e-01	minor_base=C	minor_cov=2/0	new_cov=21/24	polymorphism_frequency=9.574e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=2/0	total_cov=23/24
RA	533	.	NC_000913	2817197	0	G	A	bias_e_value=3256480	bias_p_value=0.701577	consensus_score=152.3	fisher_strand_p_value=0.496983	frequency=1	ks_quality_p_value=0.674458	major_base=A	major_cov=23/27	major_frequency=9.615e-01	minor_base=G	minor_cov=0/2	new_cov=23/27	polymorphism_frequency=9.615e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/2	total_cov=23/29
RA	534	.	NC_000913	2823288	0	C	T	bias_e_value=1987140	bias_p_value=0.42811	consensus_score=187.3	fisher_strand_p_value=0.146616	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/23	major_frequency=9.420e-01	minor_base=C	minor_cov=1/3	new_cov=42/23	polymorphism_frequency=9.420e-01	polymorphism_score=-1.3	prediction=consensus	ref_cov=1/3	total_cov=44/26
RA	535	.	NC_000913	2867454	0	T	A	consensus_score=146.7	frequency=1	major_base=A	major_cov=22/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/23
RA	536	.	NC_000913	2871153	0	T	G	bias_e_value=3803810	bias_p_value=0.819495	consensus_score=185.3	fisher_strand_p_value=0.462963	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=29/24	major_frequency=9.815e-01	minor_base=T	minor_cov=0/1	new_cov=29/24	polymorphism_frequency=9.815e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/25
RA	537	.	NC_000913	2926543	0	C	T	bias_e_value=3443040	bias_p_value=0.74177	consensus_score=135.8	fisher_strand_p_value=0.530303	frequency=1	ks_quality_p_value=0.705143	major_base=T	major_cov=30/13	major_frequency=9.556e-01	minor_base=C	minor_cov=1/1	new_cov=30/13	polymorphism_frequency=9.556e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=31/14
RA	538	.	NC_000913	2926544	0	C	T	bias_e_value=3022610	bias_p_value=0.651193	consensus_score=131.8	fisher_strand_p_value=0.530303	frequency=1	ks_quality_p_value=0.550232	major_base=T	major_cov=30/13	major_frequency=9.556e-01	minor_base=C	minor_cov=1/1	new_cov=30/13	polymorphism_frequency=9.556e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=1/1	total_cov=31/14
RA	539	.	NC_000913	2926772	0	C	A	bias_e_value=3927160	bias_p_value=0.84607	consensus_score=154.4	fisher_strand_p_value=0.499274	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=28/23	major_frequency=9.623e-01	minor_base=C	minor_cov=2/0	new_cov=28/23	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=30/23
RA	540	.	NC_000913	3028546	0	G	A	consensus_score=120.0	frequency=1	major_base=A	major_cov=22/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/16
RA	541	.	NC_000913	3050472	0	G	A	bias_e_value=2411990	bias_p_value=0.51964	consensus_score=128.3	fisher_strand_p_value=0.198606	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/23	major_frequency=9.524e-01	minor_base=C	minor_cov=2/0	new_cov=17/23	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/24
RA	542	.	NC_000913	3061916	0	C	T	bias_e_value=3641850	bias_p_value=0.784602	consensus_score=208.6	fisher_strand_p_value=0.42029	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/40	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=28/40	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/40
RA	543	.	NC_000913	3065449	0	G	A	bias_e_value=4631920	bias_p_value=0.997903	consensus_score=158.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.935941	major_base=A	major_cov=26/27	major_frequency=9.298e-01	minor_base=C	minor_cov=2/2	new_cov=26/27	polymorphism_frequency=9.298e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=29/29
RA	544	.	NC_000913	3065861	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=170.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=31/26	major_frequency=9.661e-01	minor_base=T	minor_cov=1/1	new_cov=31/26	polymorphism_frequency=9.661e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	545	.	NC_000913	3089260	0	T	C	bias_e_value=3808830	bias_p_value=0.820576	consensus_score=229.5	fisher_strand_p_value=0.487179	frequency=1	ks_quality_p_value=0.953179	major_base=C	major_cov=40/37	major_frequency=9.872e-01	minor_base=A	minor_cov=0/1	new_cov=40/37	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/38
RA	546	.	NC_000913	3090968	0	G	A	bias_e_value=2447070	bias_p_value=0.527197	consensus_score=208.5	fisher_strand_p_value=0.419355	frequency=1	ks_quality_p_value=0.484831	major_base=A	major_cov=25/36	major_frequency=9.839e-01	minor_base=G	minor_cov=1/0	new_cov=25/36	polymorphism_frequency=9.839e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=26/36
RA	547	.	NC_000913	3104887	0	G	A	bias_e_value=3474230	bias_p_value=0.74849	consensus_score=222.8	fisher_strand_p_value=0.498834	frequency=1	ks_quality_p_value=0.763452	major_base=A	major_cov=41/35	major_frequency=9.744e-01	minor_base=C	minor_cov=2/0	new_cov=41/35	polymorphism_frequency=9.744e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=43/35
RA	548	.	NC_000913	3120786	0	G	A	consensus_score=111.5	frequency=1	major_base=A	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	549	.	NC_000913	3121033	0	T	C	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=94.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997155	major_base=C	major_cov=14/12	major_frequency=9.630e-01	minor_base=A	minor_cov=1/0	new_cov=14/12	polymorphism_frequency=9.630e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=15/12
RA	550	.	NC_000913	3127981	0	G	A	bias_e_value=3625980	bias_p_value=0.781182	consensus_score=216.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.416366	major_base=A	major_cov=27/42	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=27/42	polymorphism_frequency=9.857e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=0/1	total_cov=27/43
RA	551	.	NC_000913	3130161	0	G	A	bias_e_value=4638660	bias_p_value=0.999355	consensus_score=130.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.96429	major_base=A	major_cov=22/22	major_frequency=9.778e-01	minor_base=C	minor_cov=1/0	new_cov=22/22	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/22
RA	552	.	NC_000913	3132077	0	G	A	bias_e_value=1950980	bias_p_value=0.420321	consensus_score=178.2	fisher_strand_p_value=0.142588	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/32	major_frequency=9.333e-01	minor_base=C	minor_cov=0/4	new_cov=24/32	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/36
RA	553	.	NC_000913	3133175	0	G	A	bias_e_value=1552220	bias_p_value=0.334412	consensus_score=213.0	fisher_strand_p_value=0.101811	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=21/48	major_frequency=9.718e-01	minor_base=C	minor_cov=2/0	new_cov=21/48	polymorphism_frequency=9.718e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=25/48
RA	554	.	NC_000913	3134263	0	G	A	bias_e_value=3578020	bias_p_value=0.770851	consensus_score=134.8	fisher_strand_p_value=0.404762	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/16	major_frequency=9.762e-01	minor_base=C	minor_cov=0/1	new_cov=25/16	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/17
RA	555	.	NC_000913	3145944	0	G	A	bias_e_value=4641550	bias_p_value=0.999977	consensus_score=162.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993236	major_base=A	major_cov=34/17	major_frequency=9.808e-01	minor_base=C	minor_cov=1/0	new_cov=34/17	polymorphism_frequency=9.808e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/17
RA	556	.	NC_000913	3150316	0	G	A	bias_e_value=3906950	bias_p_value=0.841716	consensus_score=143.1	fisher_strand_p_value=0.493061	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=25/23	major_frequency=9.600e-01	minor_base=T	minor_cov=2/0	new_cov=25/23	polymorphism_frequency=9.600e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/0	total_cov=27/23
RA	557	.	NC_000913	3162216	0	G	A	bias_e_value=4640050	bias_p_value=0.999655	consensus_score=273.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.973844	major_base=A	major_cov=47/38	major_frequency=9.770e-01	minor_base=C	minor_cov=1/1	new_cov=47/38	polymorphism_frequency=9.770e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/41
RA	558	.	NC_000913	3176625	0	G	A	bias_e_value=4641450	bias_p_value=0.999957	consensus_score=190.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990692	major_base=A	major_cov=21/37	major_frequency=9.831e-01	minor_base=G	minor_cov=0/1	new_cov=21/37	polymorphism_frequency=9.831e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=21/38
RA	559	.	NC_000913	3179383	0	G	A	bias_e_value=3740900	bias_p_value=0.805941	consensus_score=242.3	fisher_strand_p_value=0.445783	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/36	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=46/36	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	560	.	NC_000913	3186297	0	G	A	bias_e_value=4230050	bias_p_value=0.911324	consensus_score=14.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.609602	major_base=A	major_cov=5/4	major_frequency=8.182e-01	minor_base=G	minor_cov=1/1	new_cov=5/4	polymorphism_frequency=8.182e-01	polymorphism_score=-0.4	prediction=consensus	ref_cov=1/1	total_cov=6/5
RA	561	.	NC_000913	3193351	0	G	A	bias_e_value=4638860	bias_p_value=0.999399	consensus_score=212.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.965521	major_base=A	major_cov=39/36	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=39/36	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/36
RA	562	.	NC_000913	3204617	0	G	A	bias_e_value=4565120	bias_p_value=0.983513	consensus_score=202.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.823995	major_base=A	major_cov=43/24	major_frequency=9.853e-01	minor_base=C	minor_cov=1/0	new_cov=43/24	polymorphism_frequency=9.853e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=44/24
RA	563	.	NC_000913	3207549	0	G	.	consensus_score=226.0	frequency=1	major_base=.	major_cov=27/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/25
RA	564	.	NC_000913	3219128	0	G	A	consensus_score=108.4	frequency=1	major_base=A	major_cov=19/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/15
RA	565	.	NC_000913	3224895	0	C	T	bias_e_value=3921530	bias_p_value=0.844856	consensus_score=248.7	fisher_strand_p_value=0.497531	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/37	major_frequency=9.753e-01	minor_base=G	minor_cov=2/0	new_cov=42/37	polymorphism_frequency=9.753e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=46/37
RA	566	.	NC_000913	3227339	0	C	T	bias_e_value=1118350	bias_p_value=0.240938	consensus_score=85.5	fisher_strand_p_value=0.0643678	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=22/6	major_frequency=9.333e-01	minor_base=C	minor_cov=0/2	new_cov=22/6	polymorphism_frequency=9.333e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=22/8
RA	567	.	NC_000913	3240423	0	C	T	bias_e_value=4641150	bias_p_value=0.999892	consensus_score=141.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985308	major_base=T	major_cov=28/18	major_frequency=9.787e-01	minor_base=G	minor_cov=1/0	new_cov=28/18	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=29/19
RA	568	.	NC_000913	3256157	0	C	T	bias_e_value=3515340	bias_p_value=0.757346	consensus_score=266.2	fisher_strand_p_value=0.390244	frequency=1	ks_quality_p_value=0.999699	major_base=T	major_cov=50/31	major_frequency=9.878e-01	minor_base=.	minor_cov=0/1	new_cov=50/31	polymorphism_frequency=9.878e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=0/0	total_cov=50/32
RA	569	.	NC_000913	3259283	0	G	A	consensus_score=183.2	frequency=1	major_base=A	major_cov=28/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/30
RA	570	.	NC_000913	3270497	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=106.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=9/27	major_frequency=9.730e-01	minor_base=C	minor_cov=0/1	new_cov=9/27	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=9/28
RA	571	.	NC_000913	3275902	0	A	T	bias_e_value=2823170	bias_p_value=0.608225	consensus_score=159.1	fisher_strand_p_value=0.278788	frequency=1	ks_quality_p_value=0.927257	major_base=T	major_cov=21/31	major_frequency=9.455e-01	minor_base=G	minor_cov=0/3	new_cov=21/31	polymorphism_frequency=9.455e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/34
RA	572	.	NC_000913	3289080	0	G	A	bias_e_value=2214.39	bias_p_value=0.00047707	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.1	fisher_strand_p_value=4.31725e-05	frequency=2.407e-01	ks_quality_p_value=1	major_base=G	major_cov=26/15	major_frequency=7.593e-01	minor_base=A	minor_cov=0/13	new_cov=0/13	polymorphism_frequency=2.407e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=26/15	total_cov=26/28
RA	573	.	NC_000913	3292312	0	C	T	bias_e_value=4370540	bias_p_value=0.941591	consensus_score=190.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.678296	major_base=T	major_cov=29/31	major_frequency=9.677e-01	minor_base=C	minor_cov=1/1	new_cov=29/31	polymorphism_frequency=9.677e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=30/34
RA	574	.	NC_000913	3304647	0	T	C	bias_e_value=4639100	bias_p_value=0.99945	consensus_score=235.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.967016	major_base=C	major_cov=32/37	major_frequency=9.857e-01	minor_base=T	minor_cov=0/1	new_cov=32/37	polymorphism_frequency=9.857e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=32/38
RA	575	.	NC_000913	3329743	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=173.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=24/30	major_frequency=9.643e-01	minor_base=G	minor_cov=1/1	new_cov=24/30	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=25/32
RA	576	.	NC_000913	3388041	0	T	G	consensus_score=202.6	frequency=1	major_base=G	major_cov=25/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/41
RA	577	.	NC_000913	3474425	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=260.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=38/37	major_frequency=9.494e-01	minor_base=T	minor_cov=2/2	new_cov=38/37	polymorphism_frequency=9.494e-01	polymorphism_score=0.1	prediction=consensus	ref_cov=2/2	total_cov=40/40
RA	578	.	NC_000913	3486386	0	G	A	bias_e_value=2.19426	bias_p_value=4.72732e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.7	fisher_strand_p_value=2.55786e-08	frequency=3.488e-01	ks_quality_p_value=1	major_base=G	major_cov=24/4	major_frequency=6.512e-01	minor_base=A	minor_cov=0/15	new_cov=0/15	polymorphism_frequency=3.488e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=24/4	total_cov=24/19
RA	579	.	NC_000913	3506393	0	T	C	consensus_score=158.4	frequency=1	major_base=C	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	580	.	NC_000913	3518501	0	C	T	bias_e_value=3482310	bias_p_value=0.75023	consensus_score=171.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.382643	major_base=T	major_cov=28/28	major_frequency=9.492e-01	minor_base=C	minor_cov=2/1	new_cov=28/28	polymorphism_frequency=9.492e-01	polymorphism_score=1.5	prediction=consensus	ref_cov=2/1	total_cov=30/29
RA	581	.	NC_000913	3524184	0	C	T	bias_e_value=3557900	bias_p_value=0.766516	consensus_score=270.4	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/51	major_frequency=9.882e-01	minor_base=G	minor_cov=1/0	new_cov=33/51	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/51
RA	582	.	NC_000913	3558291	0	C	T	consensus_score=120.8	frequency=1	major_base=T	major_cov=24/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/13
RA	583	.	NC_000913	3559621	0	C	T	consensus_score=262.2	frequency=1	major_base=T	major_cov=38/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	584	.	NC_000913	3560119	0	A	G	consensus_score=246.0	frequency=1	major_base=G	major_cov=36/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/42
RA	585	.	NC_000913	3560455	1	.	G	consensus_score=218.1	frequency=1	major_base=G	major_cov=36/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/30
RA	586	.	NC_000913	3576313	0	A	G	bias_e_value=4560230	bias_p_value=0.982459	consensus_score=239.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.818642	major_base=G	major_cov=42/35	major_frequency=9.625e-01	minor_base=A	minor_cov=2/1	new_cov=42/35	polymorphism_frequency=9.625e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=2/1	total_cov=45/36
RA	587	.	NC_000913	3579050	0	G	A	bias_e_value=4010770	bias_p_value=0.864082	consensus_score=137.0	fisher_strand_p_value=0.558145	frequency=1	ks_quality_p_value=0.94283	major_base=A	major_cov=30/19	major_frequency=9.423e-01	minor_base=T	minor_cov=1/2	new_cov=30/19	polymorphism_frequency=9.423e-01	polymorphism_score=-5.7	prediction=consensus	ref_cov=0/0	total_cov=31/21
RA	588	.	NC_000913	3581316	0	G	A	bias_e_value=3902760	bias_p_value=0.840812	consensus_score=217.3	fisher_strand_p_value=0.493349	frequency=1	ks_quality_p_value=0.99683	major_base=A	major_cov=35/35	major_frequency=9.722e-01	minor_base=G	minor_cov=2/0	new_cov=35/35	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=37/35
RA	589	.	NC_000913	3581850	0	G	A	consensus_score=76.3	frequency=1	major_base=A	major_cov=8/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/16
RA	590	.	NC_000913	3585517	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=236.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=34/42	major_frequency=9.870e-01	minor_base=T	minor_cov=0/1	new_cov=34/42	polymorphism_frequency=9.870e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/43
RA	591	.	NC_000913	3587531	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=203.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/22	major_frequency=9.844e-01	minor_base=T	minor_cov=1/0	new_cov=41/22	polymorphism_frequency=9.844e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/22
RA	592	.	NC_000913	3588787	0	G	A	bias_e_value=4605890	bias_p_value=0.992294	consensus_score=233.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.878454	major_base=A	major_cov=32/50	major_frequency=9.880e-01	minor_base=C	minor_cov=0/1	new_cov=32/50	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=32/52
RA	593	.	NC_000913	3589956	0	G	A	consensus_score=370.0	frequency=1	major_base=A	major_cov=58/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/57
RA	594	.	NC_000913	3590251	0	C	T	bias_e_value=3883220	bias_p_value=0.836602	consensus_score=261.1	fisher_strand_p_value=0.504303	frequency=1	ks_quality_p_value=0.963516	major_base=T	major_cov=36/46	major_frequency=9.762e-01	minor_base=G	minor_cov=0/2	new_cov=36/46	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	595	.	NC_000913	3618836	0	C	T	bias_e_value=3977120	bias_p_value=0.856834	consensus_score=253.1	fisher_strand_p_value=0.522662	frequency=1	ks_quality_p_value=0.985587	major_base=T	major_cov=32/50	major_frequency=9.762e-01	minor_base=C	minor_cov=0/2	new_cov=32/50	polymorphism_frequency=9.762e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/2	total_cov=32/54
RA	596	.	NC_000913	3621090	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=187.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/51	major_frequency=9.802e-01	minor_base=A	minor_cov=1/1	new_cov=48/51	polymorphism_frequency=9.802e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=50/53
RA	597	.	NC_000913	3633749	0	C	T	consensus_score=74.9	frequency=1	major_base=T	major_cov=12/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/12
RA	598	.	NC_000913	3647677	0	C	T	consensus_score=219.0	frequency=1	major_base=T	major_cov=35/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/34
RA	599	.	NC_000913	3684443	0	C	T	bias_e_value=3731220	bias_p_value=0.803856	consensus_score=262.1	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.997226	major_base=T	major_cov=45/35	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=45/35	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/37
RA	600	.	NC_000913	3707947	0	C	A	bias_e_value=3757670	bias_p_value=0.809555	consensus_score=129.6	fisher_strand_p_value=0.452381	frequency=1	ks_quality_p_value=0.995365	major_base=A	major_cov=18/23	major_frequency=9.762e-01	minor_base=C	minor_cov=1/0	new_cov=18/23	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=19/23
RA	601	.	NC_000913	3713979	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=80.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=12/17	major_frequency=9.667e-01	minor_base=G	minor_cov=0/1	new_cov=12/17	polymorphism_frequency=9.667e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/18
RA	602	.	NC_000913	3725176	0	T	G	consensus_score=189.9	frequency=1	major_base=G	major_cov=36/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/25
RA	603	.	NC_000913	3744369	0	C	T	consensus_score=142.7	frequency=1	major_base=T	major_cov=22/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/20
RA	604	.	NC_000913	3781049	0	C	T	bias_e_value=2941670	bias_p_value=0.633755	consensus_score=115.6	fisher_strand_p_value=0.278788	frequency=1	ks_quality_p_value=0.99683	major_base=T	major_cov=25/17	major_frequency=9.333e-01	minor_base=C	minor_cov=3/0	new_cov=25/17	polymorphism_frequency=9.333e-01	polymorphism_score=-2.2	prediction=consensus	ref_cov=3/0	total_cov=28/17
RA	605	.	NC_000913	3803453	0	C	T	consensus_score=89.5	frequency=1	major_base=T	major_cov=20/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/7
RA	606	.	NC_000913	3803945	0	C	T	bias_e_value=3960290	bias_p_value=0.853207	consensus_score=88.3	fisher_strand_p_value=0.512315	frequency=1	ks_quality_p_value=0.994904	major_base=T	major_cov=11/16	major_frequency=9.310e-01	minor_base=G	minor_cov=0/2	new_cov=11/16	polymorphism_frequency=9.310e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/18
RA	607	.	NC_000913	3809942	0	C	T	bias_e_value=2272680	bias_p_value=0.489628	consensus_score=254.9	fisher_strand_p_value=0.180563	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/38	major_frequency=9.444e-01	minor_base=G	minor_cov=1/4	new_cov=47/38	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/2	total_cov=50/45
RA	608	.	NC_000913	3815883	1	.	C	bias_e_value=4641650	bias_p_value=1	consensus_score=200.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=45/18	major_frequency=9.265e-01	minor_base=.	minor_cov=4/1	new_cov=45/18	polymorphism_frequency=9.265e-01	polymorphism_score=6.2	prediction=consensus	ref_cov=4/1	total_cov=49/19
RA	609	.	NC_000913	3827026	0	C	T	bias_e_value=4366720	bias_p_value=0.940769	consensus_score=232.4	fisher_strand_p_value=0.676187	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/46	major_frequency=9.259e-01	minor_base=G	minor_cov=3/3	new_cov=29/46	polymorphism_frequency=9.259e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/49
RA	610	.	NC_000913	3829385	0	C	T	bias_e_value=4202450	bias_p_value=0.905378	consensus_score=237.3	fisher_strand_p_value=0.59782	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/42	major_frequency=9.630e-01	minor_base=G	minor_cov=2/1	new_cov=36/42	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=38/44
RA	611	.	NC_000913	3834845	0	C	T	bias_e_value=4540090	bias_p_value=0.978119	consensus_score=217.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.798235	major_base=T	major_cov=38/33	major_frequency=9.861e-01	minor_base=C	minor_cov=1/0	new_cov=38/33	polymorphism_frequency=9.861e-01	polymorphism_score=-4.2	prediction=consensus	ref_cov=1/0	total_cov=39/33
RA	612	.	NC_000913	3850507	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=216.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/35	major_frequency=9.459e-01	minor_base=C	minor_cov=2/2	new_cov=35/35	polymorphism_frequency=9.459e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=2/2	total_cov=37/38
RA	613	.	NC_000913	3870464	0	C	T	bias_e_value=4626410	bias_p_value=0.996717	consensus_score=216.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.920073	major_base=T	major_cov=36/37	major_frequency=9.865e-01	minor_base=G	minor_cov=0/1	new_cov=36/37	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/39
RA	614	.	NC_000913	3875521	0	T	C	bias_e_value=819601	bias_p_value=0.176575	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.1	fisher_strand_p_value=0.0518515	frequency=3.750e-01	ks_quality_p_value=0.818731	major_base=T	major_cov=9/6	major_frequency=6.250e-01	minor_base=C	minor_cov=9/0	new_cov=9/0	polymorphism_frequency=3.750e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=9/6	total_cov=18/6
RA	615	.	NC_000913	3900610	0	C	T	bias_e_value=4626260	bias_p_value=0.996685	consensus_score=108.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.919686	major_base=T	major_cov=20/21	major_frequency=8.723e-01	minor_base=C	minor_cov=3/3	new_cov=20/21	polymorphism_frequency=8.723e-01	polymorphism_score=7.0	prediction=consensus	ref_cov=3/3	total_cov=23/24
RA	616	.	NC_000913	3904907	0	C	T	consensus_score=146.1	frequency=1	major_base=T	major_cov=21/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/25
RA	617	.	NC_000913	3914648	0	C	T	bias_e_value=4276150	bias_p_value=0.921255	consensus_score=166.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.630375	major_base=T	major_cov=20/39	major_frequency=9.219e-01	minor_base=C	minor_cov=2/3	new_cov=20/39	polymorphism_frequency=9.219e-01	polymorphism_score=5.1	prediction=consensus	ref_cov=2/3	total_cov=22/44
RA	618	.	NC_000913	3926894	0	C	T	bias_e_value=4637460	bias_p_value=0.999098	consensus_score=165.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.957818	major_base=T	major_cov=25/29	major_frequency=9.818e-01	minor_base=G	minor_cov=0/1	new_cov=25/29	polymorphism_frequency=9.818e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/30
RA	619	.	NC_000913	3927292	0	T	C	consensus_score=183.7	frequency=1	major_base=C	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	620	.	NC_000913	3937909	0	G	A	consensus_score=214.5	frequency=1	major_base=A	major_cov=28/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	621	.	NC_000913	3937997	0	G	A	consensus_score=222.4	frequency=1	major_base=A	major_cov=35/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	622	.	NC_000913	3938441	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=255.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=33/26	major_frequency=9.672e-01	minor_base=C	minor_cov=1/1	new_cov=33/26	polymorphism_frequency=9.672e-01	polymorphism_score=1.2	prediction=consensus	ref_cov=1/1	total_cov=34/28
RA	623	.	NC_000913	3941874	0	C	T	bias_e_value=3929500	bias_p_value=0.846574	consensus_score=44.4	fisher_strand_p_value=0.5	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=13/10	major_frequency=9.200e-01	minor_base=C	minor_cov=2/0	new_cov=13/10	polymorphism_frequency=9.200e-01	polymorphism_score=-3.3	prediction=consensus	ref_cov=2/0	total_cov=15/10
RA	624	.	NC_000913	3946246	0	G	A	bias_e_value=3902590	bias_p_value=0.840777	consensus_score=132.5	fisher_strand_p_value=0.493333	frequency=1	ks_quality_p_value=0.996762	major_base=A	major_cov=36/38	major_frequency=9.867e-01	minor_base=G	minor_cov=1/0	new_cov=36/38	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=37/38
RA	625	.	NC_000913	3950099	0	C	T	bias_e_value=4641610	bias_p_value=0.999992	consensus_score=127.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995968	major_base=T	major_cov=17/27	major_frequency=9.778e-01	minor_base=G	minor_cov=0/1	new_cov=17/27	polymorphism_frequency=9.778e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/28
RA	626	.	NC_000913	3956003	0	G	A	bias_e_value=454084	bias_p_value=0.0978281	consensus_score=227.3	fisher_strand_p_value=0.0198947	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=27/49	major_frequency=9.500e-01	minor_base=G	minor_cov=4/0	new_cov=27/49	polymorphism_frequency=9.500e-01	polymorphism_score=NA	prediction=consensus	ref_cov=4/0	total_cov=32/50
RA	627	.	NC_000913	3992970	0	T	G	bias_e_value=3430000	bias_p_value=0.738961	consensus_score=182.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.371096	major_base=G	major_cov=33/29	major_frequency=9.841e-01	minor_base=T	minor_cov=1/0	new_cov=33/29	polymorphism_frequency=9.841e-01	polymorphism_score=-3.7	prediction=consensus	ref_cov=1/0	total_cov=34/29
RA	628	.	NC_000913	4040623	0	G	A	bias_e_value=3407380	bias_p_value=0.734087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.3	fisher_strand_p_value=0.366212	frequency=6.000e-01	ks_quality_p_value=1	major_base=A	major_cov=8/22	major_frequency=6.000e-01	minor_base=G	minor_cov=8/12	new_cov=8/22	polymorphism_frequency=6.000e-01	polymorphism_score=50.1	prediction=polymorphism	ref_cov=8/12	total_cov=16/34
RA	629	.	NC_000913	4084932	0	G	T	bias_e_value=3839850	bias_p_value=0.827259	consensus_score=228.2	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=0.9894	major_base=T	major_cov=36/32	major_frequency=9.855e-01	minor_base=G	minor_cov=0/1	new_cov=36/32	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/34
RA	630	.	NC_000913	4128223	0	A	T	bias_e_value=2505290	bias_p_value=0.53974	consensus_score=138.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.211287	major_base=T	major_cov=27/22	major_frequency=8.448e-01	minor_base=A	minor_cov=5/4	new_cov=27/22	polymorphism_frequency=8.448e-01	polymorphism_score=22.0	prediction=consensus	ref_cov=5/4	total_cov=33/26
RA	631	.	NC_000913	4139298	0	G	A	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=165.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997101	major_base=A	major_cov=26/26	major_frequency=9.811e-01	minor_base=C	minor_cov=1/0	new_cov=26/26	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/26
RA	632	.	NC_000913	4154445	0	G	T	bias_e_value=3568330	bias_p_value=0.768764	consensus_score=176.5	fisher_strand_p_value=0.634566	frequency=1	ks_quality_p_value=0.634231	major_base=T	major_cov=27/36	major_frequency=9.403e-01	minor_base=G	minor_cov=1/3	new_cov=27/36	polymorphism_frequency=9.403e-01	polymorphism_score=0.6	prediction=consensus	ref_cov=1/3	total_cov=28/39
RA	633	.	NC_000913	4160157	0	G	A	bias_e_value=3552350	bias_p_value=0.765319	consensus_score=151.7	fisher_strand_p_value=0.4	frequency=1	ks_quality_p_value=0.99674	major_base=A	major_cov=19/30	major_frequency=9.800e-01	minor_base=G	minor_cov=1/0	new_cov=19/30	polymorphism_frequency=9.800e-01	polymorphism_score=-6.8	prediction=consensus	ref_cov=1/0	total_cov=20/30
RA	634	.	NC_000913	4171728	0	C	T	consensus_score=22.7	frequency=1	major_base=T	major_cov=6/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/10
RA	635	.	NC_000913	4175827	0	C	T	bias_e_value=3882580	bias_p_value=0.836465	consensus_score=222.3	fisher_strand_p_value=0.485714	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/33	major_frequency=9.857e-01	minor_base=C	minor_cov=0/1	new_cov=36/33	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=36/34
RA	636	.	NC_000913	4178883	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=200.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/35	major_frequency=9.714e-01	minor_base=G	minor_cov=1/1	new_cov=33/35	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	637	.	NC_000913	4179001	0	C	T	bias_e_value=2570170	bias_p_value=0.553719	consensus_score=286.1	fisher_strand_p_value=0.220513	frequency=1	ks_quality_p_value=0.999506	major_base=T	major_cov=41/48	major_frequency=9.780e-01	minor_base=A	minor_cov=2/0	new_cov=41/48	polymorphism_frequency=9.780e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/49
RA	638	.	NC_000913	4185777	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=244.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/42	major_frequency=9.878e-01	minor_base=G	minor_cov=0/1	new_cov=39/42	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=41/43
RA	639	.	NC_000913	4193177	0	C	T	bias_e_value=4641510	bias_p_value=0.999969	consensus_score=245.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99212	major_base=T	major_cov=31/48	major_frequency=9.875e-01	minor_base=G	minor_cov=0/1	new_cov=31/48	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/49
RA	640	.	NC_000913	4193707	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=271.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/44	major_frequency=9.647e-01	minor_base=T	minor_cov=1/2	new_cov=38/44	polymorphism_frequency=9.647e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=41/46
RA	641	.	NC_000913	4193820	0	C	T	bias_e_value=4241230	bias_p_value=0.913733	consensus_score=209.3	fisher_strand_p_value=0.614509	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/34	major_frequency=9.459e-01	minor_base=C	minor_cov=1/3	new_cov=36/34	polymorphism_frequency=9.459e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/3	total_cov=37/39
RA	642	.	NC_000913	4219752	0	C	T	bias_e_value=2524090	bias_p_value=0.543792	consensus_score=94.5	fisher_strand_p_value=0.213904	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=18/14	major_frequency=9.412e-01	minor_base=G	minor_cov=0/2	new_cov=18/14	polymorphism_frequency=9.412e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/16
RA	643	.	NC_000913	4222743	0	C	T	bias_e_value=3236220	bias_p_value=0.697213	consensus_score=109.6	fisher_strand_p_value=0.333333	frequency=1	ks_quality_p_value=0.993671	major_base=T	major_cov=24/11	major_frequency=9.722e-01	minor_base=C	minor_cov=0/1	new_cov=24/11	polymorphism_frequency=9.722e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=0/1	total_cov=24/12
RA	644	.	NC_000913	4223638	0	T	C	bias_e_value=4101160	bias_p_value=0.883556	consensus_score=164.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.558035	major_base=C	major_cov=15/39	major_frequency=9.643e-01	minor_base=T	minor_cov=0/2	new_cov=15/39	polymorphism_frequency=9.643e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/2	total_cov=15/41
RA	645	.	NC_000913	4224483	0	C	T	bias_e_value=2692340	bias_p_value=0.58004	consensus_score=324.1	fisher_strand_p_value=0.238275	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/50	major_frequency=9.811e-01	minor_base=G	minor_cov=0/2	new_cov=54/50	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/52
RA	646	.	NC_000913	4234479	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=165.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/26	major_frequency=9.630e-01	minor_base=G	minor_cov=1/1	new_cov=26/26	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/27
RA	647	.	NC_000913	4249684	0	C	T	bias_e_value=4641420	bias_p_value=0.99995	consensus_score=171.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990025	major_base=T	major_cov=33/23	major_frequency=9.825e-01	minor_base=G	minor_cov=1/0	new_cov=33/23	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/24
RA	648	.	NC_000913	4265668	0	C	T	bias_e_value=2664370	bias_p_value=0.574014	consensus_score=237.2	fisher_strand_p_value=0.234099	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/36	major_frequency=9.744e-01	minor_base=C	minor_cov=0/2	new_cov=40/36	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=41/39
RA	649	.	NC_000913	4269449	0	C	T	consensus_score=81.5	frequency=1	major_base=T	major_cov=17/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/11
RA	650	.	NC_000913	4271130	0	C	T	bias_e_value=2112040	bias_p_value=0.455018	consensus_score=243.0	fisher_strand_p_value=0.160987	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/30	major_frequency=9.747e-01	minor_base=G	minor_cov=0/2	new_cov=47/30	polymorphism_frequency=9.747e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/32
RA	651	.	NC_000913	4278488	0	C	T	consensus_score=91.9	frequency=1	major_base=T	major_cov=12/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/21
RA	652	.	NC_000913	4282536	0	C	T	consensus_score=78.2	frequency=1	major_base=T	major_cov=9/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/16
RA	653	.	NC_000913	4284077	0	C	T	bias_e_value=4640600	bias_p_value=0.999774	consensus_score=251.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.978809	major_base=T	major_cov=45/36	major_frequency=9.759e-01	minor_base=A	minor_cov=1/1	new_cov=45/36	polymorphism_frequency=9.759e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	654	.	NC_000913	4286033	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=196.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/20	major_frequency=9.565e-01	minor_base=G	minor_cov=2/1	new_cov=46/20	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=49/23
RA	655	.	NC_000913	4296187	0	C	T	bias_e_value=3857330	bias_p_value=0.831026	consensus_score=54.1	fisher_strand_p_value=0.478261	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/12	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=10/12	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	656	.	NC_000913	4296300	0	C	T	bias_e_value=4126190	bias_p_value=0.888948	consensus_score=30.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.567414	major_base=T	major_cov=7/10	major_frequency=8.500e-01	minor_base=C	minor_cov=1/2	new_cov=7/10	polymorphism_frequency=8.500e-01	polymorphism_score=0.5	prediction=consensus	ref_cov=1/2	total_cov=8/12
RA	657	.	NC_000913	4296380	1	.	C	consensus_score=104.7	frequency=1	major_base=C	major_cov=16/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	658	.	NC_000913	4296380	2	.	G	bias_e_value=4641650	bias_p_value=1	consensus_score=103.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=16/20	major_frequency=9.730e-01	minor_base=T	minor_cov=0/1	new_cov=16/20	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/21
RA	659	.	NC_000913	4297469	0	C	T	bias_e_value=3750650	bias_p_value=0.808042	consensus_score=186.2	fisher_strand_p_value=0.483871	frequency=1	ks_quality_p_value=0.926677	major_base=T	major_cov=32/29	major_frequency=9.839e-01	minor_base=G	minor_cov=0/1	new_cov=32/29	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=33/30
RA	660	.	NC_000913	4298199	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=243.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/30	major_frequency=9.753e-01	minor_base=G	minor_cov=1/1	new_cov=49/30	polymorphism_frequency=9.753e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/31
RA	661	.	NC_000913	4301071	0	C	T	bias_e_value=4097990	bias_p_value=0.882872	consensus_score=107.6	fisher_strand_p_value=0.556866	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/28	major_frequency=9.048e-01	minor_base=G	minor_cov=0/4	new_cov=10/28	polymorphism_frequency=9.048e-01	polymorphism_score=-6.0	prediction=consensus	ref_cov=0/0	total_cov=10/32
RA	662	.	NC_000913	4303755	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=213.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=35/37	major_frequency=9.863e-01	minor_base=G	minor_cov=0/1	new_cov=35/37	polymorphism_frequency=9.863e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/38
RA	663	.	NC_000913	4311337	0	C	T	bias_e_value=3846000	bias_p_value=0.828585	consensus_score=221.3	fisher_strand_p_value=0.485294	frequency=1	ks_quality_p_value=0.97872	major_base=T	major_cov=35/32	major_frequency=9.853e-01	minor_base=G	minor_cov=0/1	new_cov=35/32	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/33
RA	664	.	NC_000913	4320079	0	C	T	bias_e_value=2737390	bias_p_value=0.589744	consensus_score=288.1	fisher_strand_p_value=0.245108	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/49	major_frequency=9.694e-01	minor_base=G	minor_cov=0/3	new_cov=46/49	polymorphism_frequency=9.694e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=47/53
RA	665	.	NC_000913	4320785	0	C	T	bias_e_value=3931850	bias_p_value=0.847081	consensus_score=311.5	fisher_strand_p_value=0.500733	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/56	major_frequency=9.810e-01	minor_base=G	minor_cov=0/2	new_cov=47/56	polymorphism_frequency=9.810e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/58
RA	666	.	NC_000913	4322605	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=289.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/34	major_frequency=9.892e-01	minor_base=G	minor_cov=1/0	new_cov=58/34	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=60/34
RA	667	.	NC_000913	4325644	0	C	T	bias_e_value=3770240	bias_p_value=0.812263	consensus_score=293.6	fisher_strand_p_value=0.462366	frequency=1	ks_quality_p_value=0.981244	major_base=T	major_cov=50/42	major_frequency=9.892e-01	minor_base=A	minor_cov=0/1	new_cov=50/42	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/43
RA	668	.	NC_000913	4325837	0	C	T	bias_e_value=4641140	bias_p_value=0.99989	consensus_score=202.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985204	major_base=T	major_cov=28/41	major_frequency=9.857e-01	minor_base=G	minor_cov=0/1	new_cov=28/41	polymorphism_frequency=9.857e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=29/42
RA	669	.	NC_000913	4332310	0	C	T	bias_e_value=1321860	bias_p_value=0.284782	consensus_score=111.2	fisher_strand_p_value=0.0810811	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/2	major_frequency=9.730e-01	minor_base=C	minor_cov=0/1	new_cov=34/2	polymorphism_frequency=9.730e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=34/3
RA	670	.	NC_000913	4337864	0	C	T	consensus_score=83.5	frequency=1	major_base=T	major_cov=12/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/13
RA	671	.	NC_000913	4342825	0	C	T	consensus_score=118.8	frequency=1	major_base=T	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	672	.	NC_000913	4349259	0	C	T	consensus_score=136.3	frequency=1	major_base=T	major_cov=28/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=28/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/14
RA	673	.	NC_000913	4351519	0	C	T	bias_e_value=4640200	bias_p_value=0.999688	consensus_score=206.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.975113	major_base=T	major_cov=27/35	major_frequency=9.688e-01	minor_base=G	minor_cov=1/1	new_cov=27/35	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/36
RA	674	.	NC_000913	4351590	0	C	T	consensus_score=189.4	frequency=1	major_base=T	major_cov=21/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/37
RA	675	.	NC_000913	4359909	0	C	T	consensus_score=134.2	frequency=1	major_base=T	major_cov=15/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/28
RA	676	.	NC_000913	4364798	0	C	T	consensus_score=224.7	frequency=1	major_base=T	major_cov=36/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	677	.	NC_000913	4366668	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=69.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/5	major_frequency=9.565e-01	minor_base=A	minor_cov=1/0	new_cov=17/5	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/5
RA	678	.	NC_000913	4371401	0	C	T	bias_e_value=2466760	bias_p_value=0.531439	consensus_score=316.3	fisher_strand_p_value=0.207456	frequency=1	ks_quality_p_value=0.992933	major_base=T	major_cov=52/42	major_frequency=9.792e-01	minor_base=G	minor_cov=0/2	new_cov=52/42	polymorphism_frequency=9.792e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	679	.	NC_000913	4373421	0	C	T	bias_e_value=4639500	bias_p_value=0.999536	consensus_score=200.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969699	major_base=T	major_cov=28/36	major_frequency=9.846e-01	minor_base=G	minor_cov=0/1	new_cov=28/36	polymorphism_frequency=9.846e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/37
RA	680	.	NC_000913	4380469	0	C	T	bias_e_value=3371970	bias_p_value=0.726459	consensus_score=295.6	fisher_strand_p_value=0.358696	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=59/32	major_frequency=9.891e-01	minor_base=G	minor_cov=0/1	new_cov=59/32	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/33
RA	681	.	NC_000913	4388120	0	C	T	bias_e_value=4641410	bias_p_value=0.999947	consensus_score=266.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989726	major_base=T	major_cov=46/37	major_frequency=9.881e-01	minor_base=G	minor_cov=1/0	new_cov=46/37	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=47/38
RA	682	.	NC_000913	4389838	0	C	T	bias_e_value=3840310	bias_p_value=0.827358	consensus_score=265.9	fisher_strand_p_value=0.47561	frequency=1	ks_quality_p_value=0.995194	major_base=T	major_cov=43/38	major_frequency=9.878e-01	minor_base=G	minor_cov=0/1	new_cov=43/38	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/39
RA	683	.	NC_000913	4401607	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=249.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=32/47	major_frequency=9.753e-01	minor_base=C	minor_cov=1/1	new_cov=32/47	polymorphism_frequency=9.753e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=33/49
RA	684	.	NC_000913	4403010	0	C	T	bias_e_value=4640460	bias_p_value=0.999743	consensus_score=198.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.977415	major_base=T	major_cov=29/36	major_frequency=9.848e-01	minor_base=.	minor_cov=0/1	new_cov=29/36	polymorphism_frequency=9.848e-01	polymorphism_score=-5.1	prediction=consensus	ref_cov=0/0	total_cov=29/37
RA	685	.	NC_000913	4407045	0	C	T	bias_e_value=4641560	bias_p_value=0.99998	consensus_score=238.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993619	major_base=T	major_cov=33/41	major_frequency=9.737e-01	minor_base=G	minor_cov=1/1	new_cov=33/41	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/42
RA	686	.	NC_000913	4414625	0	C	T	bias_e_value=2652200	bias_p_value=0.571392	consensus_score=202.8	fisher_strand_p_value=0.232298	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/32	major_frequency=9.714e-01	minor_base=G	minor_cov=0/2	new_cov=36/32	polymorphism_frequency=9.714e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/34
RA	687	.	NC_000913	4418862	0	C	T	bias_e_value=3704370	bias_p_value=0.798071	consensus_score=277.6	fisher_strand_p_value=0.43617	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=53/40	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=53/40	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/41
RA	688	.	NC_000913	4426929	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=117.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/19	major_frequency=9.744e-01	minor_base=A	minor_cov=1/0	new_cov=19/19	polymorphism_frequency=9.744e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/19
RA	689	.	NC_000913	4429990	0	A	T	bias_e_value=5.7727	bias_p_value=1.24367e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.9	fisher_strand_p_value=7.12414e-08	frequency=2.105e-01	ks_quality_p_value=1	major_base=A	major_cov=7/38	major_frequency=7.895e-01	minor_base=T	minor_cov=12/0	new_cov=12/0	polymorphism_frequency=2.105e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=7/38	total_cov=19/38
RA	690	.	NC_000913	4433459	0	C	T	bias_e_value=2700060	bias_p_value=0.581703	consensus_score=215.3	fisher_strand_p_value=0.239437	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/16	major_frequency=9.859e-01	minor_base=C	minor_cov=0/1	new_cov=54/16	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/17
RA	691	.	NC_000913	4435124	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=106.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/18	major_frequency=9.737e-01	minor_base=G	minor_cov=0/1	new_cov=19/18	polymorphism_frequency=9.737e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/19
RA	692	.	NC_000913	4435750	0	C	T	consensus_score=220.6	frequency=1	major_base=T	major_cov=37/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/38
RA	693	.	NC_000913	4451280	0	C	T	consensus_score=120.9	frequency=1	major_base=T	major_cov=22/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=22/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=22/24
RA	694	.	NC_000913	4457392	0	C	T	bias_e_value=1908060	bias_p_value=0.411073	consensus_score=165.6	fisher_strand_p_value=0.137881	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/18	major_frequency=9.623e-01	minor_base=G	minor_cov=0/2	new_cov=33/18	polymorphism_frequency=9.623e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=34/20
RA	695	.	NC_000913	4482901	0	C	T	bias_e_value=2710950	bias_p_value=0.584048	consensus_score=227.5	fisher_strand_p_value=0.241081	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/36	major_frequency=9.600e-01	minor_base=G	minor_cov=0/3	new_cov=36/36	polymorphism_frequency=9.600e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/39
RA	696	.	NC_000913	4486869	0	T	A	bias_e_value=2733210	bias_p_value=0.588845	consensus_score=405.3	fisher_strand_p_value=0.244469	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/62	major_frequency=9.764e-01	minor_base=C	minor_cov=3/0	new_cov=62/62	polymorphism_frequency=9.764e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=66/63
RA	697	.	NC_000913	4487022	0	C	T	bias_e_value=4356400	bias_p_value=0.938545	consensus_score=315.8	fisher_strand_p_value=0.670563	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/55	major_frequency=9.545e-01	minor_base=G	minor_cov=3/2	new_cov=50/55	polymorphism_frequency=9.545e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/57
RA	698	.	NC_000913	4489775	0	C	T	bias_e_value=4219270	bias_p_value=0.909002	consensus_score=210.6	fisher_strand_p_value=0.604946	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=38/34	major_frequency=9.600e-01	minor_base=C	minor_cov=1/2	new_cov=38/34	polymorphism_frequency=9.600e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=1/2	total_cov=39/37
RA	699	.	NC_000913	4494499	0	C	T	consensus_score=112.4	frequency=1	major_base=T	major_cov=15/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/21
RA	700	.	NC_000913	4501500	0	C	T	bias_e_value=3489720	bias_p_value=0.751826	consensus_score=178.4	fisher_strand_p_value=0.384308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/35	major_frequency=9.265e-01	minor_base=G	minor_cov=1/4	new_cov=28/35	polymorphism_frequency=9.265e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/39
RA	701	.	NC_000913	4502761	0	G	C	bias_e_value=554.329	bias_p_value=0.000119425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=103.0	fisher_strand_p_value=9.50562e-06	frequency=2.653e-01	ks_quality_p_value=1	major_base=G	major_cov=11/25	major_frequency=7.347e-01	minor_base=C	minor_cov=13/0	new_cov=13/0	polymorphism_frequency=2.653e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=11/25	total_cov=24/25
RA	702	.	NC_000913	4510238	0	T	G	bias_e_value=4641480	bias_p_value=0.999962	consensus_score=151.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.991342	major_base=G	major_cov=19/26	major_frequency=9.783e-01	minor_base=.	minor_cov=0/1	new_cov=19/26	polymorphism_frequency=9.783e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=0/0	total_cov=19/27
RA	703	.	NC_000913	4517355	0	C	T	bias_e_value=2984390	bias_p_value=0.642959	consensus_score=217.0	fisher_strand_p_value=0.285166	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/40	major_frequency=9.565e-01	minor_base=G	minor_cov=0/3	new_cov=26/40	polymorphism_frequency=9.565e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=28/43
RA	704	.	NC_000913	4524401	0	C	T	bias_e_value=65506.4	bias_p_value=0.0141127	consensus_score=149.6	fisher_strand_p_value=0.00194918	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=19/41	major_frequency=9.091e-01	minor_base=C	minor_cov=6/0	new_cov=19/41	polymorphism_frequency=9.091e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=6/0	total_cov=27/41
RA	705	.	NC_000913	4524596	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=204.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998683	major_base=T	major_cov=26/40	major_frequency=9.565e-01	minor_base=C	minor_cov=1/2	new_cov=26/40	polymorphism_frequency=9.565e-01	polymorphism_score=-2.5	prediction=consensus	ref_cov=1/2	total_cov=27/42
RA	706	.	NC_000913	4529039	0	C	T	bias_e_value=1860650	bias_p_value=0.400859	consensus_score=151.6	fisher_strand_p_value=0.132774	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/18	major_frequency=9.630e-01	minor_base=C	minor_cov=0/2	new_cov=34/18	polymorphism_frequency=9.630e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=35/20
RA	707	.	NC_000913	4530797	0	C	T	bias_e_value=4641490	bias_p_value=0.999966	consensus_score=248.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99171	major_base=T	major_cov=39/38	major_frequency=9.872e-01	minor_base=A	minor_cov=0/1	new_cov=39/38	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/39
RA	708	.	NC_000913	4541261	0	C	T	bias_e_value=3447870	bias_p_value=0.742811	consensus_score=102.8	fisher_strand_p_value=0.375	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=20/11	major_frequency=9.688e-01	minor_base=G	minor_cov=0/1	new_cov=20/11	polymorphism_frequency=9.688e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/12
RA	709	.	NC_000913	4553671	0	C	T	consensus_score=262.1	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	710	.	NC_000913	4564385	0	C	T	consensus_score=271.4	frequency=1	major_base=T	major_cov=41/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/46
RA	711	.	NC_000913	4570550	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=259.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=40/41	major_frequency=9.643e-01	minor_base=G	minor_cov=1/2	new_cov=40/41	polymorphism_frequency=9.643e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	712	.	NC_000913	4571280	0	C	T	consensus_score=100.9	frequency=1	major_base=T	major_cov=11/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/23
RA	713	.	NC_000913	4585673	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=269.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/41	major_frequency=9.881e-01	minor_base=G	minor_cov=0/1	new_cov=42/41	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/42
RA	714	.	NC_000913	4587365	0	C	T	consensus_score=145.3	frequency=1	major_base=T	major_cov=19/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/29
RA	715	.	NC_000913	4604517	0	C	T	consensus_score=125.6	frequency=1	major_base=T	major_cov=16/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/23
RA	716	.	NC_000913	4630295	0	C	T	bias_e_value=4636170	bias_p_value=0.998819	consensus_score=159.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.951801	major_base=T	major_cov=29/24	major_frequency=9.636e-01	minor_base=C	minor_cov=1/1	new_cov=29/24	polymorphism_frequency=9.636e-01	polymorphism_score=-3.1	prediction=consensus	ref_cov=1/1	total_cov=32/25
RA	717	.	NC_000913	4636925	0	G	C	bias_e_value=4641630	bias_p_value=0.999996	consensus_score=169.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997101	major_base=C	major_cov=26/26	major_frequency=9.811e-01	minor_base=G	minor_cov=0/1	new_cov=26/26	polymorphism_frequency=9.811e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=26/27
RA	718	.	NC_000913	4638058	0	C	T	bias_e_value=3053150	bias_p_value=0.657773	consensus_score=169.6	fisher_strand_p_value=0.444444	frequency=1	ks_quality_p_value=0.668636	major_base=T	major_cov=23/30	major_frequency=9.815e-01	minor_base=C	minor_cov=1/0	new_cov=23/30	polymorphism_frequency=9.815e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=25/30
RA	719	.	NC_000913	4638240	0	G	A	bias_e_value=3666160	bias_p_value=0.789838	consensus_score=195.1	fisher_strand_p_value=0.457627	frequency=1	ks_quality_p_value=0.931724	major_base=A	major_cov=26/32	major_frequency=9.831e-01	minor_base=G	minor_cov=1/0	new_cov=26/32	polymorphism_frequency=9.831e-01	polymorphism_score=-3.9	prediction=consensus	ref_cov=1/0	total_cov=27/32
MC	720	.	NC_000913	258135	258683	541	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=1	right_outside_cov=41
MC	721	.	NC_000913	275509	280915	0	0	left_inside_cov=1	left_outside_cov=30	right_inside_cov=2	right_outside_cov=4
MC	722	.	NC_000913	280922	281912	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	723	.	NC_000913	282164	283285	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	724	.	NC_000913	283537	285494	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	725	.	NC_000913	285529	288928	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	726	.	NC_000913	288950	289299	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	727	.	NC_000913	289518	291331	0	649	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	728	.	NC_000913	291583	292627	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	729	.	NC_000913	292658	296009	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	730	.	NC_000913	296640	297270	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	731	.	NC_000913	297405	298651	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	732	.	NC_000913	298802	299460	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	733	.	NC_000913	299661	305032	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	734	.	NC_000913	305330	307036	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	735	.	NC_000913	307230	313339	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	736	.	NC_000913	313398	315228	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=0	right_outside_cov=35
MC	737	.	NC_000913	315462	326409	1021	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=5
MC	738	.	NC_000913	326579	329078	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	739	.	NC_000913	330108	331138	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	740	.	NC_000913	331384	333072	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	741	.	NC_000913	333136	344484	0	0	left_inside_cov=2	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	742	.	NC_000913	344563	348082	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=2	right_outside_cov=5
MC	743	.	NC_000913	348298	349368	0	0	left_inside_cov=1	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	744	.	NC_000913	349543	353041	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	745	.	NC_000913	353091	355110	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=2	right_outside_cov=4
MC	746	.	NC_000913	355294	356739	0	0	left_inside_cov=3	left_outside_cov=5	right_inside_cov=3	right_outside_cov=4
MC	747	.	NC_000913	356931	358319	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	748	.	NC_000913	358324	359110	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	749	.	NC_000913	359196	359482	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=1	right_outside_cov=4
MC	750	.	NC_000913	372340	372748	0	0	left_inside_cov=0	left_outside_cov=6	right_inside_cov=3	right_outside_cov=32
MC	751	.	NC_000913	402391	403113	0	0	left_inside_cov=0	left_outside_cov=34	right_inside_cov=1	right_outside_cov=35
MC	752	.	NC_000913	565829	566134	0	0	left_inside_cov=0	left_outside_cov=33	right_inside_cov=0	right_outside_cov=6
MC	753	.	NC_000913	566368	577187	0	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=0	right_outside_cov=37
MC	754	.	NC_000913	1299499	1300697	1197	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=0	right_outside_cov=16
MC	755	.	NC_000913	1978503	1979278	767	0	left_inside_cov=0	left_outside_cov=10	right_inside_cov=0	right_outside_cov=10
MC	756	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=51	right_inside_cov=2	right_outside_cov=54
MC	757	.	NC_000913	2904103	2904163	0	0	left_inside_cov=0	left_outside_cov=23	right_inside_cov=1	right_outside_cov=24
MC	758	.	NC_000913	3423890	3424421	531	0	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
MC	759	.	NC_000913	3942277	3945338	1764	1295	left_inside_cov=3	left_outside_cov=4	right_inside_cov=3	right_outside_cov=4
JC	760	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=21	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=242	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=239	max_left_minus=239	max_left_plus=239	max_min_left=96	max_min_left_minus=77	max_min_left_plus=96	max_min_right=116	max_min_right_minus=68	max_min_right_plus=116	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=245	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.63	new_junction_read_count=32	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	761	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=22	coverage_plus=15	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=235	max_left_minus=202	max_left_plus=235	max_min_left=113	max_min_left_minus=109	max_min_left_plus=113	max_min_right=114	max_min_right_minus=114	max_min_right_plus=112	max_pos_hash_score=468	max_right=223	max_right_minus=223	max_right_plus=204	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.82	new_junction_read_count=40	polymorphism_frequency=9.539e-01	pos_hash_score=36	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.08	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	762	.	NC_000913	258675	-1	NC_000913	1301058	-1	0	alignment_overlap=0	coverage_minus=11	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__258675__-1__NC_000913__1301058__-1__0____251__251__1__0	max_left=238	max_left_minus=223	max_left_plus=238	max_min_left=117	max_min_left_minus=115	max_min_left_plus=117	max_min_right=121	max_min_right_minus=121	max_min_right_plus=118	max_pos_hash_score=484	max_right=220	max_right_minus=192	max_right_plus=220	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.55	new_junction_read_count=28	polymorphism_frequency=9.309e-01	pos_hash_score=25	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.04	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=25
JC	763	.	NC_000913	273955	1	NC_000913	565828	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=16	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__273955__1__NC_000913__565828__-1__0____251__251__1__0	max_left=246	max_left_minus=237	max_left_plus=246	max_min_left=106	max_min_left_minus=105	max_min_left_plus=106	max_min_right=121	max_min_right_minus=121	max_min_right_plus=108	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=210	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.65	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	764	.	NC_000913	273955	1	NC_000913	1091176	-1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__273955__1__NC_000913__1091176__-1__0____251__251__1__0	max_left=240	max_left_minus=214	max_left_plus=240	max_min_left=119	max_min_left_minus=111	max_min_left_plus=119	max_min_right=123	max_min_right_minus=106	max_min_right_plus=123	max_pos_hash_score=484	max_right=243	max_right_minus=243	max_right_plus=204	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=33
JC	765	.	NC_000913	275149	-1	NC_000913	577188	1	0	alignment_overlap=0	coverage_minus=19	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__577188__1__0____251__251__1__0	max_left=231	max_left_minus=219	max_left_plus=231	max_min_left=120	max_min_left_minus=118	max_min_left_plus=120	max_min_right=123	max_min_right_minus=123	max_min_right_plus=122	max_pos_hash_score=484	max_right=248	max_right_minus=241	max_right_plus=248	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.73	new_junction_read_count=37	polymorphism_frequency=1.000e+00	pos_hash_score=35	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=37
JC	766	.	NC_000913	275149	-1	NC_000913	1091173	1	0	alignment_overlap=0	coverage_minus=13	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__275149__-1__NC_000913__1091173__1__0____251__251__1__0	max_left=230	max_left_minus=230	max_left_plus=228	max_min_left=111	max_min_left_minus=109	max_min_left_plus=111	max_min_right=123	max_min_right_minus=123	max_min_right_plus=99	max_pos_hash_score=484	max_right=243	max_right_minus=243	max_right_plus=242	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.65	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=32	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	767	.	NC_000913	275508	-1	NC_000913	372749	1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=20	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=232	key=NC_000913__275508__-1__NC_000913__372739__1__10____251__251__0__0	max_left=223	max_left_minus=217	max_left_plus=223	max_min_left=118	max_min_left_minus=37	max_min_left_plus=118	max_min_right=110	max_min_right_minus=24	max_min_right_plus=110	max_pos_hash_score=464	max_right=237	max_right_minus=237	max_right_plus=201	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.60	new_junction_read_count=29	polymorphism_frequency=9.361e-01	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=10	side_1_possible_overlap_registers=242	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.06	side_2_overlap=0	side_2_possible_overlap_registers=232	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=26
JC	768	.	NC_000913	315229	1	NC_000913	1199872	-1	-2	alignment_overlap=-2	coverage_minus=16	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__315229__1__NC_000913__1199872__-1__-2__TC__251__251__0__0	max_left=237	max_left_minus=237	max_left_plus=236	max_min_left=121	max_min_left_minus=113	max_min_left_plus=121	max_min_right=120	max_min_right_minus=100	max_min_right_plus=120	max_pos_hash_score=480	max_right=235	max_right_minus=234	max_right_plus=235	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.70	new_junction_read_count=35	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=35	unique_read_sequence=TC
JC	769	.	NC_000913	366180	-1	NC_000913	366274	1	0	alignment_overlap=0	coverage_minus=28	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__366180__-1__NC_000913__366274__1__0____251__251__0__0	max_left=246	max_left_minus=246	max_left_plus=242	max_min_left=124	max_min_left_minus=124	max_min_left_plus=119	max_min_right=105	max_min_right_minus=105	max_min_right_plus=89	max_pos_hash_score=484	max_right=249	max_right_minus=244	max_right_plus=249	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.91	new_junction_read_count=46	polymorphism_frequency=9.684e-01	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=242	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=45
JC	770	.	NC_000913	402390	-1	NC_000913	403114	1	0	alignment_overlap=5	coverage_minus=14	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=237	key=NC_000913__402390__-1__NC_000913__403109__1__5____251__251__0__0	max_left=244	max_left_minus=229	max_left_plus=244	max_min_left=122	max_min_left_minus=122	max_min_left_plus=101	max_min_right=105	max_min_right_minus=105	max_min_right_plus=59	max_pos_hash_score=474	max_right=233	max_right_minus=233	max_right_plus=224	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.69	new_junction_read_count=34	polymorphism_frequency=1.000e+00	pos_hash_score=31	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=5	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=32
JC	771	.	NC_000913	525628	-1	NC_000913	525722	1	0	alignment_overlap=4	coverage_minus=49	coverage_plus=52	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__525628__-1__NC_000913__525718__1__4____251__251__0__0	max_left=245	max_left_minus=243	max_left_plus=245	max_min_left=121	max_min_left_minus=121	max_min_left_plus=120	max_min_right=108	max_min_right_minus=108	max_min_right_plus=105	max_pos_hash_score=476	max_right=243	max_right_minus=236	max_right_plus=243	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=2.09	new_junction_read_count=104	polymorphism_frequency=9.589e-01	pos_hash_score=90	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.10	side_1_overlap=4	side_1_possible_overlap_registers=242	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=4	side_2_redundant=0	total_non_overlap_reads=101
JC	772	.	NC_000913	1084696	-1	NC_000913	3392145	-1	0	alignment_overlap=16	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=7.661e-02	junction_possible_overlap_registers=226	key=NC_000913__1084696__-1__NC_000913__3392161__-1__16____251__251__0__0	max_left=54	max_left_minus=54	max_left_plus=54	max_min_left=54	max_min_left_minus=54	max_min_left_plus=54	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=452	max_right=160	max_right_minus=110	max_right_plus=160	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.08	new_junction_read_count=4	polymorphism_frequency=7.661e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=16	side_1_possible_overlap_registers=242	side_1_read_count=54	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=46	side_2_redundant=0	total_non_overlap_reads=3
JC	773	.	NC_000913	1094245	1	NC_000913	1199869	1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1094245__1__NC_000913__1199869__1__0____251__251__1__0	max_left=241	max_left_minus=241	max_left_plus=230	max_min_left=123	max_min_left_minus=104	max_min_left_plus=123	max_min_right=118	max_min_right_minus=117	max_min_right_plus=118	max_pos_hash_score=484	max_right=213	max_right_minus=153	max_right_plus=213	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.42	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	774	.	NC_000913	1207790	1	NC_000913	1209619	1	0	alignment_overlap=16	coverage_minus=5	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=3.662e-01	junction_possible_overlap_registers=226	key=NC_000913__1207790__1__NC_000913__1209603__1__16____251__251__0__0	max_left=219	max_left_minus=191	max_left_plus=219	max_min_left=107	max_min_left_minus=107	max_min_left_plus=15	max_min_right=110	max_min_right_minus=110	max_min_right_plus=89	max_pos_hash_score=452	max_right=218	max_right_minus=187	max_right_plus=218	neg_log10_pos_hash_p_value=1.9	new_junction_coverage=0.25	new_junction_read_count=12	polymorphism_frequency=3.662e-01	pos_hash_score=10	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=16	side_1_possible_overlap_registers=242	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=10
JC	775	.	NC_000913	1207805	-1	NC_000913	1209602	-1	0	alignment_overlap=16	coverage_minus=9	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=5.143e-01	junction_possible_overlap_registers=226	key=NC_000913__1207805__-1__NC_000913__1209618__-1__16____251__251__0__0	max_left=201	max_left_minus=160	max_left_plus=201	max_min_left=114	max_min_left_minus=102	max_min_left_plus=114	max_min_right=104	max_min_right_minus=104	max_min_right_plus=76	max_pos_hash_score=452	max_right=220	max_right_minus=202	max_right_plus=220	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.47	new_junction_read_count=22	polymorphism_frequency=5.143e-01	pos_hash_score=20	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=16	side_1_possible_overlap_registers=242	side_1_read_count=22	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.44	side_2_overlap=0	side_2_possible_overlap_registers=226	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=21
JC	776	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=6	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=238	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=237	max_left_minus=176	max_left_plus=237	max_min_left=95	max_min_left_minus=95	max_min_left_plus=95	max_min_right=122	max_min_right_minus=122	max_min_right_plus=51	max_pos_hash_score=476	max_right=239	max_right_minus=235	max_right_plus=239	neg_log10_pos_hash_p_value=1.5	new_junction_coverage=0.32	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	777	.	NC_000913	1301050	1	NC_000913	1978503	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1301050__1__NC_000913__1978503__1__0____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=242	max_min_left=121	max_min_left_minus=118	max_min_left_plus=121	max_min_right=122	max_min_right_minus=122	max_min_right_plus=121	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=223	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.75	new_junction_read_count=38	polymorphism_frequency=9.482e-01	pos_hash_score=38	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=233	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	778	.	NC_000913	1399590	1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1399590__1__NC_000913__2101749__1__0____251__251__0__1	max_left=240	max_left_minus=201	max_left_plus=240	max_min_left=124	max_min_left_minus=124	max_min_left_plus=80	max_min_right=116	max_min_right_minus=116	max_min_right_plus=82	max_pos_hash_score=484	max_right=229	max_right_minus=224	max_right_plus=229	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.43	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=22
JC	779	.	NC_000913	1399593	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=28	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____251__251__0__1	max_left=245	max_left_minus=245	max_left_plus=211	max_min_left=123	max_min_left_minus=123	max_min_left_plus=110	max_min_right=119	max_min_right_minus=119	max_min_right_plus=102	max_pos_hash_score=482	max_right=243	max_right_minus=243	max_right_plus=231	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.83	new_junction_read_count=42	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=42
JC	780	.	NC_000913	1840339	-1	NC_000913	4549478	1	0	alignment_overlap=15	coverage_minus=2	coverage_plus=1	flanking_left=251	flanking_right=251	frequency=6.074e-02	junction_possible_overlap_registers=227	key=NC_000913__1840339__-1__NC_000913__4549463__1__15____251__251__0__0	max_left=219	max_left_minus=219	max_left_plus=153	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=82	max_min_right_minus=82	max_min_right_plus=82	max_pos_hash_score=454	max_right=82	max_right_minus=82	max_right_plus=82	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.06	new_junction_read_count=3	polymorphism_frequency=6.074e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.03	side_1_overlap=15	side_1_possible_overlap_registers=242	side_1_read_count=52	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.93	side_2_overlap=0	side_2_possible_overlap_registers=227	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=3
JC	781	.	NC_000913	1909925	1	NC_000913	2101749	1	0	alignment_overlap=1	coverage_minus=16	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__1909924__1__NC_000913__2101749__1__1____251__251__0__1	max_left=244	max_left_minus=238	max_left_plus=244	max_min_left=115	max_min_left_minus=115	max_min_left_plus=115	max_min_right=65	max_min_right_minus=63	max_min_right_plus=65	max_pos_hash_score=482	max_right=230	max_right_minus=230	max_right_plus=228	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.50	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=237	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=25
JC	782	.	NC_000913	1909928	-1	NC_000913	2290113	-1	0	alignment_overlap=2	coverage_minus=6	coverage_plus=18	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1909930__-1__NC_000913__2290113__-1__2____251__251__0__1	max_left=246	max_left_minus=233	max_left_plus=246	max_min_left=99	max_min_left_minus=68	max_min_left_plus=99	max_min_right=120	max_min_right_minus=91	max_min_right_plus=120	max_pos_hash_score=480	max_right=239	max_right_minus=239	max_right_plus=188	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.48	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=236	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	783	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____251__251__0__0	max_left=187	max_left_minus=187	max_left_plus=109	max_min_left=109	max_min_left_minus=107	max_min_left_plus=109	max_min_right=101	max_min_right_minus=101	max_min_right_plus=0	max_pos_hash_score=468	max_right=230	max_right_minus=230	max_right_plus=189	neg_log10_pos_hash_p_value=2.2	new_junction_coverage=0.20	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=8	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=9
JC	784	.	NC_000913	1978503	1	NC_000913	4434636	-1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1978503__1__NC_000913__4434636__-1__0____251__251__1__0	max_left=247	max_left_minus=236	max_left_plus=247	max_min_left=115	max_min_left_minus=115	max_min_left_plus=112	max_min_right=123	max_min_right_minus=97	max_min_right_plus=123	max_pos_hash_score=484	max_right=247	max_right_minus=247	max_right_plus=247	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.91	new_junction_read_count=46	polymorphism_frequency=9.780e-01	pos_hash_score=39	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=42
JC	785	.	NC_000913	2101749	1	NC_000913	2174359	1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2101749__1__NC_000913__2174359__1__0____251__251__1__0	max_left=244	max_left_minus=244	max_left_plus=214	max_min_left=116	max_min_left_minus=116	max_min_left_plus=111	max_min_right=114	max_min_right_minus=107	max_min_right_plus=114	max_pos_hash_score=484	max_right=245	max_right_minus=231	max_right_plus=245	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.57	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=29	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=29
JC	786	.	NC_000913	2174362	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=19	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__2174362__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=248	max_left_minus=248	max_left_plus=224	max_min_left=114	max_min_left_minus=114	max_min_left_plus=91	max_min_right=122	max_min_right_minus=120	max_min_right_plus=122	max_pos_hash_score=484	max_right=211	max_right_minus=198	max_right_plus=211	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.65	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=33	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=33
JC	787	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=24	coverage_plus=23	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=236	max_left_minus=232	max_left_plus=236	max_min_left=118	max_min_left_minus=118	max_min_left_plus=114	max_min_right=106	max_min_right_minus=106	max_min_right_plus=100	max_pos_hash_score=468	max_right=236	max_right_minus=227	max_right_plus=236	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.04	new_junction_read_count=51	polymorphism_frequency=1.000e+00	pos_hash_score=43	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=47
JC	788	.	NC_000913	2904102	-1	NC_000913	2904164	1	0	alignment_overlap=29	coverage_minus=16	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=213	key=NC_000913__2904102__-1__NC_000913__2904135__1__29____251__251__0__0	max_left=208	max_left_minus=208	max_left_plus=205	max_min_left=104	max_min_left_minus=104	max_min_left_plus=99	max_min_right=109	max_min_right_minus=109	max_min_right_plus=23	max_pos_hash_score=426	max_right=219	max_right_minus=219	max_right_plus=181	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.52	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=29	side_1_possible_overlap_registers=242	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=23
JC	789	.	NC_000913	3583428	1	NC_000913	4434629	1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=31	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3583428__1__NC_000913__4434629__1__0____251__251__1__0	max_left=245	max_left_minus=240	max_left_plus=245	max_min_left=125	max_min_left_minus=125	max_min_left_plus=121	max_min_right=120	max_min_right_minus=120	max_min_right_plus=117	max_pos_hash_score=484	max_right=249	max_right_minus=249	max_right_plus=222	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=53	polymorphism_frequency=9.809e-01	pos_hash_score=48	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=51
JC	790	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=25	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=241	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____251__251__1__0	max_left=248	max_left_minus=248	max_left_plus=214	max_min_left=120	max_min_left_minus=107	max_min_left_plus=120	max_min_right=104	max_min_right_minus=104	max_min_right_plus=101	max_pos_hash_score=482	max_right=233	max_right_minus=233	max_right_plus=232	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.81	new_junction_read_count=41	polymorphism_frequency=1.000e+00	pos_hash_score=37	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=233	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=40
JC	791	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=33	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____251__251__1__0	max_left=245	max_left_minus=227	max_left_plus=245	max_min_left=122	max_min_left_minus=122	max_min_left_plus=122	max_min_right=125	max_min_right_minus=125	max_min_right_plus=121	max_pos_hash_score=484	max_right=242	max_right_minus=242	max_right_plus=242	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.15	new_junction_read_count=58	polymorphism_frequency=1.000e+00	pos_hash_score=53	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=57
JC	792	.	NC_000913	4053613	-1	NC_000913	4285379	1	0	alignment_overlap=21	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=4.816e-02	junction_possible_overlap_registers=221	key=NC_000913__4053613__-1__NC_000913__4285358__1__21____251__251__0__0	max_left=176	max_left_minus=176	max_left_plus=168	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=62	max_min_right_minus=52	max_min_right_plus=62	max_pos_hash_score=442	max_right=219	max_right_minus=52	max_right_plus=219	neg_log10_pos_hash_p_value=3.3	new_junction_coverage=0.06	new_junction_read_count=3	polymorphism_frequency=4.816e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=21	side_1_possible_overlap_registers=242	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.56	side_2_overlap=0	side_2_possible_overlap_registers=221	side_2_read_count=72	side_2_redundant=0	total_non_overlap_reads=3
UN	793	.	NC_000913	15583	15588
UN	794	.	NC_000913	15592	16543
UN	795	.	NC_000913	16545	16549
UN	796	.	NC_000913	16551	16555
UN	797	.	NC_000913	16557	16557
UN	798	.	NC_000913	16559	16559
UN	799	.	NC_000913	20004	20332
UN	800	.	NC_000913	20334	20336
UN	801	.	NC_000913	223950	223950
UN	802	.	NC_000913	223953	224547
UN	803	.	NC_000913	224549	224549
UN	804	.	NC_000913	225096	225387
UN	805	.	NC_000913	227187	227189
UN	806	.	NC_000913	227191	228444
UN	807	.	NC_000913	252869	252869
UN	808	.	NC_000913	252871	252871
UN	809	.	NC_000913	257908	258683
UN	810	.	NC_000913	259705	259705
UN	811	.	NC_000913	259709	259710
UN	812	.	NC_000913	259712	259713
UN	813	.	NC_000913	259715	259716
UN	814	.	NC_000913	259719	259722
UN	815	.	NC_000913	259724	259724
UN	816	.	NC_000913	259728	259728
UN	817	.	NC_000913	259730	259731
UN	818	.	NC_000913	259733	259742
UN	819	.	NC_000913	259745	259746
UN	820	.	NC_000913	259749	259763
UN	821	.	NC_000913	259765	259770
UN	822	.	NC_000913	270694	270694
UN	823	.	NC_000913	270696	270696
UN	824	.	NC_000913	270704	270704
UN	825	.	NC_000913	270706	270707
UN	826	.	NC_000913	270710	270713
UN	827	.	NC_000913	270715	270715
UN	828	.	NC_000913	270717	270717
UN	829	.	NC_000913	270719	270719
UN	830	.	NC_000913	270721	271070
UN	831	.	NC_000913	271072	271072
UN	832	.	NC_000913	274176	274947
UN	833	.	NC_000913	274950	274950
UN	834	.	NC_000913	274956	274957
UN	835	.	NC_000913	275509	283307
UN	836	.	NC_000913	283309	283407
UN	837	.	NC_000913	283409	283409
UN	838	.	NC_000913	283417	283418
UN	839	.	NC_000913	283443	283443
UN	840	.	NC_000913	283462	283464
UN	841	.	NC_000913	283466	283470
UN	842	.	NC_000913	283472	283476
UN	843	.	NC_000913	283480	283480
UN	844	.	NC_000913	283484	283487
UN	845	.	NC_000913	283489	283490
UN	846	.	NC_000913	283493	289395
UN	847	.	NC_000913	289398	289398
UN	848	.	NC_000913	289402	289402
UN	849	.	NC_000913	289404	289404
UN	850	.	NC_000913	289407	289408
UN	851	.	NC_000913	289411	289411
UN	852	.	NC_000913	289464	296040
UN	853	.	NC_000913	296054	296074
UN	854	.	NC_000913	296077	296077
UN	855	.	NC_000913	296079	296079
UN	856	.	NC_000913	296081	296081
UN	857	.	NC_000913	296083	296083
UN	858	.	NC_000913	296098	296098
UN	859	.	NC_000913	296307	296307
UN	860	.	NC_000913	296310	296310
UN	861	.	NC_000913	296312	296312
UN	862	.	NC_000913	296316	296320
UN	863	.	NC_000913	296322	296577
UN	864	.	NC_000913	296579	297315
UN	865	.	NC_000913	297317	297360
UN	866	.	NC_000913	297362	297372
UN	867	.	NC_000913	297374	298663
UN	868	.	NC_000913	298665	298689
UN	869	.	NC_000913	298691	298691
UN	870	.	NC_000913	298693	298693
UN	871	.	NC_000913	298695	298734
UN	872	.	NC_000913	298736	305087
UN	873	.	NC_000913	305090	305092
UN	874	.	NC_000913	305094	305094
UN	875	.	NC_000913	305101	305102
UN	876	.	NC_000913	305108	305108
UN	877	.	NC_000913	305115	305115
UN	878	.	NC_000913	305117	305118
UN	879	.	NC_000913	305120	305123
UN	880	.	NC_000913	305125	305125
UN	881	.	NC_000913	305127	305129
UN	882	.	NC_000913	305131	305131
UN	883	.	NC_000913	305133	305137
UN	884	.	NC_000913	305140	305140
UN	885	.	NC_000913	305142	305148
UN	886	.	NC_000913	305151	305158
UN	887	.	NC_000913	305163	305165
UN	888	.	NC_000913	305168	305169
UN	889	.	NC_000913	305186	305186
UN	890	.	NC_000913	305191	305191
UN	891	.	NC_000913	305205	305205
UN	892	.	NC_000913	305208	305209
UN	893	.	NC_000913	305211	305213
UN	894	.	NC_000913	305216	305223
UN	895	.	NC_000913	305225	305236
UN	896	.	NC_000913	305238	305241
UN	897	.	NC_000913	305245	305253
UN	898	.	NC_000913	305255	305256
UN	899	.	NC_000913	305258	305258
UN	900	.	NC_000913	305260	305260
UN	901	.	NC_000913	305262	305263
UN	902	.	NC_000913	305265	305268
UN	903	.	NC_000913	305270	305277
UN	904	.	NC_000913	305281	307055
UN	905	.	NC_000913	307060	307060
UN	906	.	NC_000913	307062	307062
UN	907	.	NC_000913	307181	315228
UN	908	.	NC_000913	315420	315420
UN	909	.	NC_000913	315433	315433
UN	910	.	NC_000913	315436	326413
UN	911	.	NC_000913	326415	326415
UN	912	.	NC_000913	326418	326418
UN	913	.	NC_000913	326420	326421
UN	914	.	NC_000913	326423	326429
UN	915	.	NC_000913	326431	326462
UN	916	.	NC_000913	326464	326464
UN	917	.	NC_000913	326466	326474
UN	918	.	NC_000913	326477	326477
UN	919	.	NC_000913	326479	326482
UN	920	.	NC_000913	326485	326485
UN	921	.	NC_000913	326487	326487
UN	922	.	NC_000913	326489	326490
UN	923	.	NC_000913	326492	326499
UN	924	.	NC_000913	326501	326514
UN	925	.	NC_000913	326516	326517
UN	926	.	NC_000913	326520	326529
UN	927	.	NC_000913	326531	326533
UN	928	.	NC_000913	326535	326537
UN	929	.	NC_000913	326539	329108
UN	930	.	NC_000913	329110	329117
UN	931	.	NC_000913	329120	329120
UN	932	.	NC_000913	329122	329139
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UN	1328	.	NC_000913	4040429	4040429
UN	1329	.	NC_000913	4040435	4040436
UN	1330	.	NC_000913	4040439	4040439
UN	1331	.	NC_000913	4166492	4166492
UN	1332	.	NC_000913	4166495	4166645
UN	1333	.	NC_000913	4166647	4166647
UN	1334	.	NC_000913	4166698	4166698
UN	1335	.	NC_000913	4166728	4166728
UN	1336	.	NC_000913	4166734	4166734
UN	1337	.	NC_000913	4166761	4166761
UN	1338	.	NC_000913	4166767	4166768
UN	1339	.	NC_000913	4166774	4166774
UN	1340	.	NC_000913	4166781	4166781
UN	1341	.	NC_000913	4166785	4166785
UN	1342	.	NC_000913	4166790	4166791
UN	1343	.	NC_000913	4166797	4166797
UN	1344	.	NC_000913	4166801	4166801
UN	1345	.	NC_000913	4166807	4166807
UN	1346	.	NC_000913	4166814	4166814
UN	1347	.	NC_000913	4166818	4166818
UN	1348	.	NC_000913	4166829	4166829
UN	1349	.	NC_000913	4166832	4166833
UN	1350	.	NC_000913	4166835	4166835
UN	1351	.	NC_000913	4166837	4166837
UN	1352	.	NC_000913	4166843	4166844
UN	1353	.	NC_000913	4166847	4166847
UN	1354	.	NC_000913	4166850	4166851
UN	1355	.	NC_000913	4166856	4166856
UN	1356	.	NC_000913	4166858	4166858
UN	1357	.	NC_000913	4166860	4166860
UN	1358	.	NC_000913	4166863	4166864
UN	1359	.	NC_000913	4166866	4166866
UN	1360	.	NC_000913	4166868	4166868
UN	1361	.	NC_000913	4166873	4167992
UN	1362	.	NC_000913	4168791	4171427
UN	1363	.	NC_000913	4171444	4171444
UN	1364	.	NC_000913	4171752	4171753
UN	1365	.	NC_000913	4171755	4171814
UN	1366	.	NC_000913	4176751	4176751
UN	1367	.	NC_000913	4176753	4176880
UN	1368	.	NC_000913	4208321	4208322
UN	1369	.	NC_000913	4208324	4208325
UN	1370	.	NC_000913	4208329	4209504
UN	1371	.	NC_000913	4210250	4212934
UN	1372	.	NC_000913	4212937	4212937
UN	1373	.	NC_000913	4212942	4212942
UN	1374	.	NC_000913	4378863	4378863
UN	1375	.	NC_000913	4498397	4498401
UN	1376	.	NC_000913	4498405	4499283
UN	1377	.	NC_000913	4499285	4499301
UN	1378	.	NC_000913	4507662	4507663
UN	1379	.	NC_000913	4507665	4507665
UN	1380	.	NC_000913	4507667	4508462
UN	1381	.	NC_000913	4508464	4508473