| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1084696 | 54 (1.070) | 4 (0.080) | 3/452 | 3.3 | 7.7% | intergenic (+49/‑296) | efeB/phoH | heme‑containing peroxidase/deferrochelatase/ATP‑binding protein PhoH |
| ? | NC_000913 | = 3392145 | 46 (0.970) | intergenic (‑117/+313) | tldD/yhdP | metalloprotease subunit TldD/phospholipid transport factor YhdP | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1084627‑1084696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgatgcgacgctGTGCGTCTTATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGCAAAAACGATGAGTCTTAACCTGGTAAGTGAACAATTGCTAGCGGCGAACG < NC_000913/3392145‑3391986 AGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGC > 1:351251/1‑180AGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCAGTTGTGCGCAGATGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAACCCGGAACATAACCGTAGGCTGGATAGGGGGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGC < 2:351251/180‑1 ggcaaCAGATGCCTGATGCGACGCTGTGCGTCTTATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGCAAAAACGATGAGTCTTAACCTGGTAAGTGAACAATTGCTAGCGGCGAACG > 1:242238/6‑185 ggcaaCAGATGCCTGATGCGACGCGGGGCGTCTTATCAGGCCTAAAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGCAAAAACGATGAGTCTTAACCTGGTAAGTGAACAATTGCTAGCGGCGAACG < 2:242238/180‑1 AGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1084627‑1084696‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgatgcgacgctGTGCGTCTTATCAGGCCTACAAACCGGAACATAACCGTAGGCTGGATAGGGCGTTCACGCCGCATCCGGCAGCCGTAAAAAATCCTCTACTGCAGTAACTAACGAGTAGCAAAAACGATGAGTCTTAACCTGGTAAGTGAACAATTGCTAGCGGCGAACG < NC_000913/3392145‑3391986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |