| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,289,080 | 0 | G | A | 24.1% | 87.1 / 10.3 | 54 | Q89Q (CAG→CAA) | yraJ | putative fimbrial usher protein YraJ |
| Reads supporting (aligned to +/- strand): ref base G (26/15); new base A (0/13); total (26/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.32e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCAGGGACATAAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATGCAAGAGGTTACGTCTCCC > NC_000913/3288830‑3289330 | accaGGGACATAAACTCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATAGGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAg < 1:490013/251‑1 (MQ=255) caGGGACATAAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGaa < 1:112425/251‑1 (MQ=255) tacCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATAGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACACAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAACAATATGCACAACTACCAGGAACATATCAGGATGATATCTGGCTGAATAAACAGAAGGTTTCACAGAAAAAAATTACATTTAcc > 2:469352/2‑251 (MQ=255) cacCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGGGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGAATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTAcc > 2:399430/1‑251 (MQ=255) caAACGTTTGTTGCCGAGGGGGCACACGGGCAGCGTCATGCTTTGCACTACCGCTAACGCCGAATGGTATTATTTCGACCCCAATAGGCTGAAAACAAAAAAAAGGGTTATGCAAAAAACCGATCTGTCGTGTTTATCAAAAAAATATGCACAACGCCAAGGAAGAAAACAGGTTGATATGTGGCTGAATAAAAAGAAGGTTGCACAGAAAAAAATATCAGTTACC‑GCCAATGCAGAGCAACTTCTGCAGc < 2:83003/251‑1 (MQ=255) aaCGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGcc > 1:7317/1‑250 (MQ=255) ttGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTAc > 1:444357/1‑251 (MQ=255) gATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGt > 1:219462/1‑249 (MQ=255) tagCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGAAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGAAACTTATCAGGTTGATATCTGGCTGTATAAACAGCAGGATTCACAGAAAAAAATTACATTTACC‑GCCAATGAAAAGCAACTTCTGCAGTCACAGTTTACGGTAGAACAACTACg > 2:385044/3‑249 (MQ=255) aacgtcATGCTTTGCACTACCGCTAACGCCGACGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGGATGCAAACCACCGATCTGTCGCGTTTTTCAAACAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGACACAAATTACATTTACC‑GCGAATGCAGAGCAACTTCTGCAGCCACAGTTTAAGGAAGAAAAACTCCGTgggcg > 2:185302/6‑247 (MQ=255) tACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATg > 2:340979/1‑251 (MQ=255) aCCGCTACCGCCGAAGAGTATTATTCCGCCCCCATTATGCTGGAACCCAAAAAAAGTGGTATGCAAACAACCGATCTGTCGCTTTTTAAAAAAAAATATGCACAACTACCAGGAACTTATCAGGTGGATATCTGGCTAAAAAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGAt < 1:33927/249‑1 (MQ=255) aCCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGAAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTAAATAAAAAGAAGTTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATg < 1:142465/250‑1 (MQ=255) aaaCGCCGAAGAGTATTATTTCGACCCCATTAGGCTGAAAACCACAAAAAGTGTTATGAAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTAAAAAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATcc < 1:340979/250‑1 (MQ=255) cGCCGAAGAGTATTATTTCGCCCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTCCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCgg < 1:170238/251‑1 (MQ=255) gCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAACAAGTGGCATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAAAAAAACTACGTGCGCTGGGAATTAAGGTGGATGAAATCCAGgc > 2:233079/1‑251 (MQ=255) gAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCgct > 2:192590/1‑251 (MQ=255) aaGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATAAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACAACGGGAGCTGGGTATTAAGGTGGAGGAAATCCAGGCgctg > 2:71959/1‑251 (MQ=255) taatattTCGACCCCATTATGCTGGAAACCACAAAAAGTGTTATGAAAACCACCGATCTGGCGCGTTTTTAAAAAAAATATGCACAACTACCAGAATCTTATCAGGTTAATATCTGGCTAAAAAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCgctggctg < 1:30611/247‑1 (MQ=255) cATTAGGCTGTAACCCAAAAAAAGTGTTAGGCAAAAACCCGACCTGTCGCTTTTTAAAAAAAAAAATGCAAAACTACCAGGACCTTATCAGGTTGATATCTGGCTAAAAAAAAAGAAGGTTTCAAAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATa < 1:111841/251‑1 (MQ=255) ataaggcgggAAACCAAAAAAAGTGGAAGGCAAACAACCGATTTGGCGGGTTTTTAAAAAAAATATGCCCAACTACCAGGAAATTAGCAGGTTAATATTTGGCTAAATAAAAAGAAGGTTCCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAg < 1:116168/243‑1 (MQ=255) tatgcggaaaaCCACAAAAAGGTGTATGCAAACACCCGTTCTGTCGCTTTTTAAAAAAAAATAGGAACAACAACCAGGAACTTATCAGGTTAATATCTGGCGAAATAAAAAGAAGGTTTCAAAAAAAAAAATTACTTTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGc < 1:140466/242‑1 (MQ=255) ggAAACCACAAAAAGTGGTATGCAAACAACCGATCTGGCGCGTTTTTAAAAAAAATATGCACACCTACAAGGAACTTATCAGGTTGATATCTGGCTGAAAAAAAAGAAGTTTCCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCa < 1:42931/251‑1 (MQ=255) aaaaaGTGGTATGCAAACACCCAATCGGTCGCTGTTTTAAAAAAAAAATGCACAACTACAAGGACCTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGTTTACACAAAAAAAAATTAAATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTg < 1:541071/251‑1 (MQ=255) gTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGa > 1:34740/1‑105 (MQ=255) gTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACGTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGa < 2:34740/105‑1 (MQ=255) gTGGTATGCAAACAACCGATCTGTCGCGTTTTTAAAAAAAATATGCACAACTACCAGGAACTTAAAAGGTTGATATCTGGCTGAAAAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACaa < 1:71959/251‑1 (MQ=255) gggTAGGCAAACACCCGACCTTCCGCTTTTTTCAAAAAAAAATGCACAACTACCAGGAACTTATCAGTTTGATATCTGGCTGAAAAAAAAGAAGTTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACaaa < 1:527806/250‑1 (MQ=255) gTATGAAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATc < 1:457618/251‑1 (MQ=255) atatgtcgcagtttacAAAAAAAAATGAACAACTACCAAGAACGAAACAGGTTTATATCTGGATGAATAAAAAGAAGGTTTCACAAAAAAAAATTACATTAACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAgat < 2:397891/236‑3 (MQ=255) gTCGCGTTTTAAAAAAAAATATGCACAACTACCAGGAACTTATCAGTTTGATATCTGGCTGAATAAAAAGAAGGTTCCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAgctg < 1:248355/248‑1 (MQ=255) tttttCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATATGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGTTAGAACAACTACGAGAGCTGGGTATTAAGGTgg > 2:419327/1‑164 (MQ=255) tttttAAAAAAAATAGGCACAACTACCAGGAACTTATCAGGTGGATATCTGGCTAAATAAAAAGAAGGTTTCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTgg < 1:419327/164‑1 (MQ=255) tttaaaaaaaaaaTATACAAAACCACCAGAAACTTATAAGGTTGAATTCTGGATAAATAAAAAGAAGGGTGCACAAAAAAAAATT‑CAATTACCCGCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAAtt < 2:219462/243‑1 (MQ=255) tttCAAAAAAATATGCACAACTACCAGGAACTTATCAGATTGATATCTGGCTAAATAAAAAGAAGGTTTCACAGAAAAAAATTAATTTTACC‑GCCAATGCAGAGCAACTTATGCAGCAACAGTTTACGGTAGAACAACTACGTGAGCTGGTTATTAAGGTGGATGACATCCCGGCACTGGCTGAAAAAGATGAGGATAGCGTGCTAAACTCCCTTGAACAAATCATTCCCGGTACAGGTACGGAATTTGAt > 2:366192/1‑251 (MQ=255) aaaTATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAatc > 1:422161/1‑250 (MQ=255) tatGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GACAATGAAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAACTCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCACCTCGCTTGAACAAAGCATTACCGGTACAGCTGCTGAATTTGATTTCAatcatcc > 1:355648/1‑250 (MQ=255) atGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTAAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAg < 1:255685/251‑1 (MQ=255) caACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAACAAAATTAAATTTACA‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGGGATCAACTCGCTTGAACAAATCATTCCCGGAACAGCTGCTGAATTTGATTTCAATCATCAGCAACt > 2:60321/1‑251 (MQ=255) aaaCTCCCAGAAATTTATCGGGTTGAAATCTGGCTGAATAAAAAGAAGGTTTCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACt < 1:60321/250‑1 (MQ=255) aCTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAAAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTATGCAGCAACAGTTTACGGTAGAACAACTACGTAAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTAAAAAAGATGACGATAGCGTGATCAAATCGCTTGAACAAATCATTCCCGGTACAGATGCTGAATTTGATTTCAATCATCAGCACCtt > 2:180804/1‑250 (MQ=255) ccaggacattacctggTTGATATCTGGATAAATAAAAAGAAGTTTTCACAAAAAAAAATTCTATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAAttt < 1:541233/237‑1 (MQ=255) cAGGAACTTATCAGGTTGGTATCAGGCTGAATAAAAAGAAGGTTTCACCGAAAAAAATTACACTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTTAGCTGGGTATTATGGTGGATGCAATCCCGGCGCTGGCTGAAAATGATGGCGATAGCGTGATCACATCGATTAAACAACTCATTCCCGGTACAGCTGCTGATTTTGCTTTCAATCATCAGCAACTTAGTTTg > 2:534362/1‑251 (MQ=255) gaaatttATCAGGTTGATATCTGGCTGAAAAAAAAGAAGGTTTCACAAAAAAAAATTACTTTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAg < 1:239282/246‑1 (MQ=255) aCTTATCGGGTTGATATCTGGCTGAATAAAAAAAAGGTTTCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCAt < 1:349985/251‑1 (MQ=255) aGGTTGATATCTGGCTGAATAATAAGAAGGTTTCCCAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAAAAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGATGAATTTGATTTCAATCAGCCGCAAATTAATTTAAGCATTCCCCa > 2:387724/1‑250 (MQ=255) ggATAGCTGGATGAATAAAAAGAAGGTTTCAAAGAAAAAAATTATATTTCCC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAAtt < 1:387724/249‑1 (MQ=255) cTGGCTGAATAAAACGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGCACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGCTGACGATAGc > 2:516418/1‑154 (MQ=255) cTGGCTGAATAAAAAAAAGGTTTCACAAAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGc < 1:516418/154‑1 (MQ=255) gCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTAcc > 1:88047/1‑251 (MQ=255) gAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGa < 1:153868/141‑1 (MQ=255) gAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGa > 2:153868/1‑141 (MQ=255) aacataagaagGTTTCACAGCAAAAAATTACATTTACC‑GCAAATGAAGAGCAACTTATGCAGCAAAAGTTTACGGTAGAAAACCTACGTGAGCTGTGTATTAAGGTGGATGAAATCCCGGAGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACACATCATTCCCGGTAAAGATGCTGCATTTGATTTCAATCATCTGCAACTTAATTTGAGCATTCCCCAACTTGCACTTTACCGTGAt > 2:571557/6‑251 (MQ=255) ttCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCATCTTAATTTGAGCATTCCACAAATTGCACTGTACCGTGATGCAAGAGGTTACg > 1:88892/1‑251 (MQ=255) cacaGAAAAAGATTACATTTACC‑GCCTATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACCACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGAAGATAGCGTGATCAACTCGCTTGAACAAATCATTCACGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAAATTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATGCAAGAGGTTACGtc > 2:512440/1‑251 (MQ=255) gAAAAACATTACATTTACC‑GCCAATGCAGGGCAACTTCTGCAGCCAAAGTTTACGGTAGAACAACTACGTGAGCTGGGCATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTAGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATCTGATTTCAATCATCATCAAATTAATTTGAGCATTCCCCAAATTGCACTGTAACGTACTGCAAGAGGATACGtacccc > 2:181383/1‑246 (MQ=255) | ACCAGGGACATAAACGCACACCGAAACAGTTGGCGCTCATCATCAAACGTTGTTTGCCGATGGTGCTCACTGGCAGCGGCATGCTTTGCACTACCGCTAACGCCGAAGAGTATTATTTCGACCCCATTATGCTGGAAACCACAAAAAGTGGTATGCAAACAACCGATCTGTCGCGTTTTTCAAAAAAATATGCACAACTACCAGGAACTTATCAGGTTGATATCTGGCTGAATAAAAAGAAGGTTTCACAGAAAAAAATTACATTTACC‑GCCAATGCAGAGCAACTTCTGCAGCCACAGTTTACGGTAGAACAACTACGTGAGCTGGGTATTAAGGTGGATGAAATCCCGGCGCTGGCTGAAAAAGATGACGATAGCGTGATCAACTCGCTTGAACAAATCATTCCCGGTACAGCTGCTGAATTTGATTTCAATCATCAGCAACTTAATTTGAGCATTCCCCAAATTGCACTGTACCGTGATGCAAGAGGTTACGTCTCCC > NC_000913/3288830‑3289330 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |