| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 119,396 | 0 | C | T | 25.5% | 93.5 / 11.9 | 52 | S39F (TCT→TTT) | ampE | protein AmpE |
| Reads supporting (aligned to +/- strand): ref base C (4/34); new base T (13/0); total (18/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGCAG > NC_000913/119152‑119644 | ggttgatggCTATCCGGATAGCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCgg < 2:180617/249‑1 (MQ=255)gattgattGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCATGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCgg < 1:63673/251‑1 (MQ=255) attgattgCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAA‑ATTTTTTTTTCggg > 1:409492/1‑251 (MQ=255) tgattgCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAGAC‑ATTTTtttctcttgcg > 2:177981/1‑246 (MQ=255) tgattgCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAC‑ATTTTTTTCTCggggg > 1:163526/1‑249 (MQ=255) gATATCGCTAAAAACATGACGGGCCATTGTGATATTGCTACGGTGCGGAAAACCGCTCCCGGTC‑TGTCATTTGATTGGTCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGGTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGGTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCaa < 2:242491/250‑2 (MQ=255) aaaaaCATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCatta < 1:437695/249‑1 (MQ=255) aaCATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGGAC‑ATTTTTTTCTCGGGCGCGCGTTAGGCATAGAC‑ATTATTgtg > 1:430323/1‑249 (MQ=255) aaCATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCg < 1:298173/251‑1 (MQ=255) gACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATGTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATgg < 1:210305/250‑1 (MQ=255) gggCCATTGTGATATGGCGCCGGATCGGAAAACCGATCCTGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGt < 2:154791/251‑1 (MQ=255) ggCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGTGGAAACCATTTTTTTTTCGG‑TGGACGTTAGGCGT‑GACCGTTATTTTGATggggggg > 2:375772/1‑247 (MQ=255) ggCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAC‑ATTTTTTTCTCGGGCGCACGTTAGGCAT‑GACACTTATTggggtgggggtg > 1:35071/1‑240 (MQ=255) atTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTg < 1:550902/251‑1 (MQ=255) gcCGGTTCGGAAAAACGATTCCGGTTCTG‑CATTTGATTGGGCTCGGTGTCGTGTGCTGGGTC‑GCAAGGAGACAACATGACGCTATTTACATCCTTACTGGTGTTAATTTGCGAGCGCCTGG‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGTGCGTGACTTTTTTACTGTTAcg < 2:415165/251‑1 (MQ=255) cGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGAGGGGCGTGACTTTTTTACTGTTACGCGCAtt < 2:109445/250‑1 (MQ=255) aaCCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGAAC‑ATTTTTTTTTCGGGCGCACGTTAGGCAT‑TACCCTTTTTTCGGGTGGCGTGACTTTTTTTCTTTTTCgcgcctttccggg > 1:564323/1‑242 (MQ=255) aCCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GTCCATTATTGCGATGGGCGTTACTTTTTTACTGTTACGCGCATT‑GCAGGGa < 1:457553/251‑1 (MQ=255) cgagccctttCCTG‑CATTTGATTGGGCACGGTGTCGTGGTCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCTTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCTCGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAga < 2:145668/242‑2 (MQ=255) ccGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑Gt < 1:373211/251‑1 (MQ=255) cGGTCCTG‑AAGTTGTTTGGGCAATGTTGCGTGTGCTGG‑TCAGCAAGTAGACAACATGACGCTATTTACAACCTTACTGGGGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCAGTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑Gtt < 2:512995/251‑1 (MQ=255) ttGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTccc < 1:314240/250‑1 (MQ=255) ggCACGGTTTCGTGGGCTGG‑GCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTGCTCTCGGGCTCACGTTAGGCAT‑GTCCATTATTGCGATGGGCGTCACTTTTTTa < 2:83962/204‑1 (MQ=255) cactgtgtcggttgctgtgcAGCAAGGAGACAACATGATGTTAGGTACAACCTTACTGGTGTTAATTTTCGAGCGCCCGT‑TTAAGTTGGGCGATCACTGGCAGCTTGATCATCTTCTTGAAGCGTTTTTTCGGCGGGGGAAAT‑ATTTTTCTCTCGGTCGTACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTGACTGTTACGCGCAGT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACttg < 2:54092/232‑3 (MQ=255) ggTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCgg < 1:395404/153‑1 (MQ=255) cGTGTGCTGG‑TCAGTAATGATACAACATGACGTCATTTCCAACCTTACTTGTGTTTATGTTCGATCGCC‑GTGTTAAGTTGTGTGCTCTCTGGCAGCTTGATCCTCGGCTTGAAGCGTTATTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACTGTAGGCAT‑TACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCTCATT‑GCAGGGTTCATG‑GTTCAACGTTCCCACGCTACTGGTGTggtt < 2:523858/250‑3 (MQ=255) gtgCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGgctgct < 2:163526/250‑1 (MQ=255) gCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTTTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGATCCTGGGGTGGCTGCTGAt > 1:177862/1‑251 (MQ=255) gCTGG‑GCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCGCTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTTACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGAt < 1:551716/251‑1 (MQ=255) gagaCAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTgtgt < 1:110217/251‑1 (MQ=255) agacaacagggagtattttACAACCGTACTGGTGTTAATTTTCGAGGTCCTGT‑TTAAGTTGGGCGAGCACTGGCAGTTTGATCGACGTCTTGAAGCGTTCTTTCGGCGTGTGAAAC‑ATTTTTCTCTCGGGCGCTCGTTAGGCAT‑GACCATTATTGCGATGGGCGTGCCTTTTTTACTGTTACGCGCATG‑GCAGGGAGTAGT‑GTTCAACGTTCCCACGCTACTGGTGTGGTTTCTGATTGGTTTGCTGTGTa < 2:475492/235‑1 (MQ=255) gaCAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTTCGATGGGCGGGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑TTTCAACGTTCCCACGCTACTGGGGTGGCTGCTGATTGGTTTGCTGTGTAt > 1:219263/1‑251 (MQ=255) acaTGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTTTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTTCTGTTACGCGCCTT‑GCAGGGGGGATT‑GTTCAACGTTCCCCCGCTACTGGTGTGGGTGCTGTTTGGGTTTCTGTGTAtttgg > 1:303672/1‑248 (MQ=255) gACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAg < 1:177981/251‑1 (MQ=255) gCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTa < 1:115836/251‑1 (MQ=255) tttACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAC‑ATTTTTTTCTCGGGGGCCCGTTAGGGAC‑GACCATTATTGCGGTGGGCGGGGCTTTTTTACTGTTAAGCGCATTTGC‑GGGAGGATT‑GTTCAACGTTCCCCCGCCACTGGGGGGGCTGCTGTTTGGTTTGGTGTGGATTGGCGCAGGTAAAGt > 1:397783/1‑251 (MQ=255) ttACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAACCATTTTT‑TCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGGGGCTTTTTTTATGTTTCGCGCATT‑GCAGGGAGTATTTGTT‑AACGTTCCCACGCTACTGGTGGGGCTGCTGGTTGGTTTGCTGGGTGTTGGCGCAGGTAAAGtt > 1:178927/1‑251 (MQ=255) aCTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCAt < 1:7595/250‑1 (MQ=255) tGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGGATT‑GTTCAAAGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGGAAAGTTCGTCTTtattat > 1:502578/1‑251 (MQ=255) tAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGc < 1:512030/250‑1 (MQ=255) gcgcCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGGGAAAC‑ATTTTTTTCTCGGGCGCACGTTATGCAT‑GACCATTATTTTGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑TTTCAACCTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTTCTGTGTATTTGCGCAAGTAAAGTTCTTCTTCCTTATCATGCTTATCTGAc > 1:302634/1‑249 (MQ=255) cgcCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAgc < 1:439426/251‑1 (MQ=255) gAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGAAC‑ATTTTTTTCTCGGGCGCCCGCTAGGCAT‑GACCCTTATTTCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTTAACGTTCCCACGCTACTGGTGTGGCTGCTGGTTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCTTTTTCATTCTTTTCTTACAACTACTTCACGAAATGAt > 1:480074/1‑249 (MQ=255) cACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCACATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACGGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTGGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCa < 1:473888/251‑1 (MQ=255) aCTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCAt < 1:61268/251‑1 (MQ=255) ggCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGGAAC‑ATTTTTTTCTCCGGCGCCCGGTAGGGAT‑TACCCTTATTGCGGTGGGCGTGACTTTTTTTCTTTTTCGCGCCTT‑GCCGGGGGGATT‑TTTCAACGGTTCCACGCTACTTGTGGGGCTGCTGATTGGTTTGGTGTGTATTGGCGCAGGTAAAGTTTGTCTTCCTTATTTTTTTTTTCTGGCAGCGTCTTCACGTAATGATAACCAttcc > 2:290362/1‑248 (MQ=255) ggCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGTGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTTACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGcc < 1:549684/251‑1 (MQ=255) atcatcGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTACTGTGTATTGGCGCAGGTTAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACg < 1:180894/251‑1 (MQ=255) gTTCTTTCGGCGGGGGAAAC‑ATTTTTTTCTCGGGCGCGCGCTAGTCAT‑TACACTTATTGGGATGGGAGTGTATTTTTTACTGGTACGCGCATT‑GCAGGGTGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCAGGTTGGGTTGTTGTGGTTTGGGGCAGGGAAAGTTCGGCTTCGTTTTCATGCTTATCTGGCAGCTGCTTCACGTAATGATACGCATGCCCGTGTCAAGAtggctggaggactc > 2:166682/1‑243 (MQ=255) gtgcggGTGTAAC‑ATTTTTCTCGTGGGTGCAAGTTAGTCAT‑GACACTTATTGCGATGGTCGTGACTTTTTTTCTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCCCGCTACTGTTGTGGCTGCTGATTGGTTGGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCAGGCTTATCTTACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGAt < 2:249829/249‑1 (MQ=255) gggTTAAAC‑ATTTTTCGCTCTGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTAGT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGGTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCACTATCATGCTGATCTGGCAGCTGCTTCACGGAATGATAGCCATGCCCGTGCCACTATGGCTGGCGATCTCACCAGGATTCAc < 2:513249/251‑1 (MQ=255) gTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACgg > 1:20782/1‑251 (MQ=255) ttCTCTCGGGAGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGACATGCCCGTGCCACGATGGCTGGCGAACTCCCCCTGATTCACGGCGTCCCGGccg > 2:523107/1‑249 (MQ=255) | GATTGATTGCTATCCGGATATCGCTAAAAACATGACGGGCCATTGTGATATTGCGCCGGATCGGAAAACCGATCCCGGTCCTG‑CATTTGATTGGGCACGGTTTCGTGTGCTGG‑TCAGCAAGGAGACAACATGACGCTATTTACAACCTTACTGGTGTTAATTTTCGAGCGCCTGT‑TTAAGTTGGGCGAGCACTGGCAGCTTGATCATCGTCTTGAAGCGTTCTTTCGGCGGGTGAAAC‑ATTTTTCTCTCGGGCGCACGTTAGGCAT‑GACCATTATTGCGATGGGCGTGACTTTTTTACTGTTACGCGCATT‑GCAGGGAGTATT‑GTTCAACGTTCCCACGCTACTGGTGTGGCTGCTGATTGGTTTGCTGTGTATTGGCGCAGGTAAAGTTCGTCTTCATTATCATGCTTATCTGACAGCTGCTTCACGTAATGATAGCCATGCCCGTGCCACGATGGCTGGCGAACTCACCATGATTCACGGCGTCCCGGCAG > NC_000913/119152‑119644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |