mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,342 | 0 | C | T | 78.0% | 93.8 / 24.6 | 50 | G60S (GGC→AGC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 2,745,089 | 0 | A | C | 36.6% | 57.7 / 11.0 | 41 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 4,604,350 | 0 | C | T | 34.8% | 19.4 / 10.5 | 23 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,846,683 | 0 | G | T | 33.3% | 45.2 / 12.5 | 45 | Q244K (CAA→AAA) | hycD | formate hydrogenlyase subunit HycD |
| * | NC_000913 | 862,535 | 0 | C | T | 31.1% | 71.0 / 14.0 | 45 | V24V (GTG→GTA) | ybiW | putative pyruvate formate lyase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.4% | 21.7 / 16.2 | 23 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,018,252 | 0 | G | A | 27.5% | 62.6 / 10.0 | 40 | E103K (GAA→AAA) | fliJ | flagellar biosynthesis protein FliJ |
| * | NC_000913 | 566,277 | 0 | C | T | 26.3% | 97.5 / 37.2 | 58 | intergenic (‑299/‑407) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 2,332,823 | 0 | A | G | 26.3% | 111.2 / 12.3 | 57 | intergenic (‑3026/+1513) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| * | NC_000913 | 566,245 | 0 | G | A | 22.9% | 122.7 / 32.4 | 61 | intergenic (‑267/‑439) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 651,267 | 0 | A | T | 22.9% | 136.3 / 16.6 | 61 | L197* (TTA→TAA) | citC | citrate lyase synthetase |
| * | NC_000913 | 566,332 | 0 | T | G | 22.6% | 108.6 / 19.7 | 53 | intergenic (‑354/‑352) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 3,665,702 | 0 | C | A | 22.6% | 31.3 / 10.7 | 31 | A37S (GCG→TCG) | gadX | DNA‑binding transcriptional dual regulator GadX |
| * | NC_000913 | 566,205 | 0 | T | C | 21.5% | 132.5 / 35.3 | 65 | intergenic (‑227/‑479) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 566,173 | 0 | C | G | 21.2% | 177.4 / 42.2 | 66 | intergenic (‑195/‑511) | intD/renD | putative integrase/protein RenD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 216102 = | 26 (0.580) | 3 (0.080) | 3/414 | 3.4 | 9.1% | intergenic (+123/+77) | nlpE/yaeF | sensor lipoprotein NlpE/peptidase C92 family protein YaeF |
| ? | NC_000913 | = 248247 | 38 (1.000) | intergenic (+113/‑2651) | rayT/dinB | REP‑associated tyrosine transposase/DNA polymerase IV | |||||
| * | ? | NC_000913 | = 3229624 | 57 (1.270) | 3 (0.070) +CGA |
3/484 | 3.7 | 5.1% | coding (737/2352 nt) | ygjK | glycoside hydrolase |
| ? | NC_000913 | 3229625 = | 57 (1.270) | coding (738/2352 nt) | ygjK | glycoside hydrolase | |||||
| * | ? | NC_000913 | = 2317229 | 65 (1.440) | 3 (0.070) | 3/490 | 3.7 | 4.4% | coding (2648/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||