New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	216102 =	26 (0.580)	3 (0.080)	3/414	3.4	9.1%	intergenic (+123/+77)	nlpE/yaeF	sensor lipoprotein NlpE/peptidase C92 family protein YaeF
	?	NC_000913	= 248247	38 (1.000)					intergenic (+113/‑2651)	rayT/dinB	REP‑associated tyrosine transposase/DNA polymerase IV
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACTTTACGCTTGAGGGTAATCCGGATACCGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCGGCAGGGCTAATCCAGCCCGATTGCGCCAGTGTAAGTGGATGC  >  NC_000913/215869‑216347                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      cACTTTACGCTTGAGGGTAATCCGGATACCGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGgc                                                                                                                                                                                                                                      <  2:317564/251‑1 (MQ=255)        cGCTTGAGGGTAATCCGGATACCGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCtt                                                                                                                                                                                                                               <  2:50133/251‑1 (MQ=255)                       cGGATACCGGTGCGCCGACTAAAGTATTGGCAACCGATACGGCAGGGAAATTTTACCCCAACCAGGTTTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTAAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGGGCTCAACGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAcc                                                                                                                                                                                                                >  1:174561/1‑251 (MQ=255)                                    gcCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTTAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGAGGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCtt                                                                                                                                                                                                   >  2:4760/1‑251 (MQ=255)                                             aGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGAt                                                                                                                                                                                          <  1:145965/251‑1 (MQ=255)                                                         cGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGGTAAGGCATTTACt                                                                                                                                                                              >  2:5855/1‑251 (MQ=255)                                                         cGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAAAAACAAACGCAAAACAGGCCCGAAAGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGTCCGGATAAGAAGATTACGCCGCATCCGGCAAAGGTGCTCAACGCCTGCTGCGACGCTGGCGCGTCtt                                                                                                                                                                                                                               >  1:252778/1‑202 (MQ=255)                                                             aCGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTAt                                                                                                                                                                          <  1:249302/251‑1 (MQ=255)                                                                                           tGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGcc                                                                                                                                            >  1:181636/1‑251 (MQ=255)                                                                                             cAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACACAGCGACCCGCCtt                                                                                                                                          >  2:269155/1‑251 (MQ=255)                                                                                                             tAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGc                                                                                                                          >  2:37045/1‑251 (MQ=255)                                                                                                                 ccGTCTTGAGACATAAACAAACGGAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAAGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGCCGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCCTGATATAAATCCCAGGCTTc                                                                                                                       >  2:327253/1‑250 (MQ=255)                                                                                                                             aGAAACAAACTCAAAACAGGACAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAATGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCTTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGACTTCAAGTGCCCCACAt                                                                                                          >  1:237713/1‑251 (MQ=255)                                                                                                                              aaaacaaacGCAAAACATGCCTGAAGGAGATAGTTCAACATTTTGAATTGGCTCGTTTTTTGTAGGCTGGATAGGGCGTTTACGCCGCCTCCGCCATTGGTGCTCAACGCCAGATGCGACTCTGGCTCGTCTTATCAGGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTAATCACCGGGTCAACCCAACAAAGCCACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATa                                                                                                         <  1:195066/250‑1 (MQ=255)                                                                                                                                aacaaacgaccaccAGGCCAGCAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATACGGCCTTTACTTTATCACCGGGTCAAACCAACAAAACGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACCTACt                                                                                                       >  2:411535/14‑251 (MQ=255)                                                                                                                                          aaaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACTTTTTTTGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCAATGGTGCTCACCGCTTGATGCGAGGCGGGCGCGCCTTATCATGCCTACAACCCCCCTAAGACCTTAAGGCGGATAAGGCATTTACTTTACCTCCGGGGAAAGCCAACAAAGCGGCCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACAGACTGTAAGTGCGt                                                                                             <  2:254292/251‑1 (MQ=255)                                                                                                                                            aCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGttt                                                                                           <  2:181636/251‑1 (MQ=255)                                                                                                                                                      aGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTaa                                                                                  >  1:192914/1‑250 (MQ=255)                                                                                                                                                                 cAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACAt                                                                      >  1:291162/1‑251 (MQ=255)                                                                                                                                                                           aaTTTGCCCGTTTTTTGTAGCCCGGATAAGGCGTTTACGCCGCATCCGGCAAGGGTGCTCAACGCCTGATGCGACGCTGGCGCTTCTTATCATGCCTACACCCCCCCTCATACCTTAAGGCGGATAAGGCATTTCCTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGtt                                                                                            <  2:165960/219‑1 (MQ=39)                                                                                                                                                                           aaTTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCAGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGtt                                                                                            >  1:165960/1‑219 (MQ=255)                                                                                                                                                                                           gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCg                                            <  1:248212/251‑1 (MQ=255)                                                                                                                                                                                           gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGGGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATc                                                  >  1:336832/1‑245 (MQ=255)                                                                                                                                                                                                                        ccGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCGGCAGGGCTAATCCAGCCCGAATGCGcccg               >  2:77164/1‑249 (MQ=255)                                                                                                                                                                                                                               tGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCGGCAGGGCTAATCCAGCCCGATTGCGCCCGTGTAAgg        >  1:172312/1‑250 (MQ=255)                                                                                                                                                                                                                                     ccAACGCCTGAGTCGCCGCGGGCGCGTCTTACCATGCCTACAACCCCCCACATACCTTAAGGCGGAAAAGGCTTTTACTTTACCCCCGGGTCAACCCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCGGCAGGGCTAATCCAGCCCGATTGCGCCAGTGTAAGTGGATGc  <  2:270586/250‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      CACTTTACGCTTGAGGGTAATCCGGATACCGGTGCGCCGACTAAAGTATTGGCACCCGATACGGCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAACAAAGCGACCCGCCTTGATATAAATCCCAGGCTTCAGGTGCCCAACATACTGTAACTGCGTTTCTGGCTTAAACGCAGAGACATCACCAATACGCATATGCATCAGATCGGCAGGGCTAATCCAGCCCGATTGCGCCAGTGTAAGTGGATGC  >  NC_000913/215869‑216347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.