mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 244,775 | 0 | G | A | 50.7% | 5.2 / 107.7 | 76 | G150D (GGC→GAC) | yafJ | putative glutamine amidotransferase YafJ |
| * | NC_000913 | 245,662 | 0 | G | A | 45.3% | 12.4 / 71.5 | 53 | I48I (ATC→ATT) | dpaA | peptidoglycan meso‑diaminopimelic acid protein amidase A |
| * | NC_000913 | 523,387 | 0 | A | G | 41.7% | 38.4 / 11.4 | 36 | M43V (ATG→GTG) | rhsD | protein RhsD |
| * | NC_000913 | 811,721 | 0 | T | G | 35.1% | 88.5 / 11.1 | 74 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 433,649 | 0 | T | G | 32.8% | 47.4 / 11.6 | 67 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 3,947,850 | 0 | C | T | 30.6% | 57.5 / 10.9 | 36 | E40K (GAA→AAA) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 2,014,222 | 0 | C | A | 28.8% | 66.6 / 11.4 | 52 | Q332K (CAA→AAA) | fliF | flagellar basal‑body MS‑ring and collar protein |
| * | NC_000913 | 2,889,448 | 0 | T | G | 28.3% | 97.6 / 12.9 | 60 | T218P (ACC→CCC) | cysI | sulfite reductase, hemoprotein subunit |
| * | NC_000913 | 2,828,506 | 0 | T | G | 27.6% | 80.5 / 10.8 | 62 | V257G (GTG→GGG) | srlD | sorbitol‑6‑phosphate 2‑dehydrogenase |
| * | NC_000913 | 1,361,765 | 0 | G | T | 25.4% | 98.7 / 10.5 | 63 | A216S (GCG→TCG) | puuD | gamma‑glutamyl‑gamma‑aminobutyrate hydrolase |
| * | NC_000913 | 2,551,293 | 0 | T | A | 24.5% | 112.2 / 10.8 | 50 | Y145F (TAT→TTT) | yfeZ | putative inner membrane protein |
| * | NC_000913 | 377,402 | 0 | G | A | 23.3% | 76.8 / 18.1 | 44 | intergenic (+91/+133) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB |
| * | NC_000913 | 3,062,320 | 0 | A | C | 22.6% | 223.7 / 11.9 | 125 | T491P (ACC→CCC) | scpA | methylmalonyl‑CoA mutase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 28 (0.590) | 4 (0.090) | 4/468 | 3.2 | 14.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 22 (0.480) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||