mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,833,567 | 0 | T | G | 42.1% | 49.4 / 10.2 | 57 | G364G (GGT→GGG) | norV | anaerobic nitric oxide reductase flavorubredoxin |
| * | NC_000913 | 442,064 | 0 | C | T | 33.3% | 42.2 / 12.7 | 36 | F172F (TTC→TTT) | thiI | tRNA uridine 4‑sulfurtransferase |
| * | NC_000913 | 3,177,748 | 0 | C | A | 33.3% | 47.5 / 11.1 | 41 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 501,564 | 0 | A | C | 32.4% | 62.1 / 11.4 | 37 | *559E (TAA→GAA) | ybaL | putative transporter YbaL |
| * | NC_000913 | 3,824,732 | 0 | T | G | 31.7% | 136.3 / 12.2 | 83 | V73G (GTG→GGG) | trmH | tRNA (Gm18) 2'‑O‑methyltransferase |
| * | NC_000913 | 4,056,115 | 0 | A | C | 30.9% | 58.7 / 12.3 | 44 | G75G (GGT→GGG) | glnL | protein histidine kinase NtrB |
| * | NC_000913 | 494,550 | 0 | G | C | 28.9% | 81.6 / 11.6 | 45 | R49P (CGG→CCG) | recR | recombination mediator protein RecR |
| * | NC_000913 | 4,192,425 | 0 | C | G | 28.1% | 103.4 / 10.0 | 58 | G71R (GGG→CGG) | thiG | 1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase |
| * | NC_000913 | 4,223,597 | 0 | C | T | 28.0% | 83.9 / 15.9 | 50 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 67,757 | 0 | T | C | 23.2% | 184.3 / 12.0 | 85 | D194G (GAT→GGT) | araA | L‑arabinose isomerase |
| * | NC_000913 | 2,846,705 | 0 | G | C | 21.4% | 141.8 / 12.0 | 70 | V236V (GTC→GTG) | hycD | formate hydrogenlyase subunit HycD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4317019 = | 109 (2.370) | 3 (0.070) | 3/470 | 3.0 | 2.9% | coding (200/1137 nt) | phnM | RPnTP hydrolase |
| ? | NC_000913 | 4317231 = | 92 (2.030) | coding (665/681 nt) | phnL | methylphosphonate degradation complex subunit PhnL | |||||
| * | ? | NC_000913 | 3583428 = | NA (NA) | 3 (0.070) | 3/476 | 3.0 | 5.4% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4283908 | 53 (1.150) | coding (995/1650 nt) | actP | acetate/glycolate:cation symporter | |||||
| * | ? | NC_000913 | 846798 = | 37 (0.810) | 3 (0.070) | 3/468 | 3.0 | 5.8% | coding (322/660 nt) | glnP | L‑glutamine ABC transporter membrane subunit |
| ? | NC_000913 | = 3925239 | 61 (1.350) | coding (395/1890 nt) | mnmG | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG | |||||