| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,846,705 | 0 | G | C | 21.4% | 141.8 / 12.0 | 70 | V236V (GTC→GTG) | hycD | formate hydrogenlyase subunit HycD |
| Reads supporting (aligned to +/- strand): ref base G (18/37); new base C (15/0); total (33/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.44e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGTGATGTTGCTGATGTTGGTGGAAC > NC_000913/2846457‑2846955 | tttttCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCCGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCCCCGGCGGTG‑A‑GGG‑GTTTCACTTTT‑GCCCCCGGACTAAACA‑C‑A‑Ccg‑ac > 2:192928/1‑251 (MQ=255) tttCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCATTTTT‑CCCCCCGGAATAAACA‑C‑C‑Ccc‑acg > 1:30826/1‑250 (MQ=255) tcttcAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCCTTTGT‑CCCCACGGAAAAAACA‑C‑C‑Ccc‑acgcac > 1:141412/1‑248 (MQ=255) cagaaaggCTCAAACTCTCTTTAAACACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCt < 2:141412/244‑1 (MQ=255) gCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAacac < 1:392688/251‑1 (MQ=255) tAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑c < 1:252314/250‑1 (MQ=255) cACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCCTTTGT‑CCCCCCCGAATAAACA‑C‑C‑CCCCAGAAACA‑CTGCAACACCC‑CCAGCCGTTT‑CAGGCt > 1:320965/1‑251 (MQ=255) ccgccgcCAGCAAGGAGACGAACGCTAAAAAGGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGGCGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTg < 1:192928/250‑1 (MQ=255) cgccgcCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGa < 1:85772/251‑1 (MQ=255) cgccgcCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTTCATTTGTTCCCCCCGGA‑TAAAAA‑C‑C‑CCC‑CCGGACAACTGCAACACCA‑CCAGCCGTTT‑CAGGCTgg > 1:45389/1‑250 (MQ=255) gccgccAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGAt < 1:12825/251‑1 (MQ=255) ccgccAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGGG‑ACGGG‑TGTCCCTTTTG‑CCCCCCGCAA‑AAACA‑C‑C‑CCC‑ACGACCAACCTCAACACCA‑CCACCTGTTT‑Caccccacgt > 2:211769/1‑243 (MQ=255) cAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGGG‑G‑AGG‑GTTCCATTTGT‑CCCCACGGAAAAAAAAAC‑C‑CCC‑A‑GAAAAACTGCAAAACCA‑CCAGCAGTTT‑TAGGCGGAAAC‑CCC‑aat > 1:73649/1‑249 (MQ=255) gagaCGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGGAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTGTTCGAACAGCGCGATAACCAGGACGCCGACCTCCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACAGCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCAt < 2:444661/251‑1 (MQ=255) aCGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTTCATTTGT‑CCCCACCGAATAAACA‑C‑C‑CCG‑CCGGACAACTGCAACACCA‑CCAGCCGTTT‑CTGGATGATAC‑CCC‑CTTTCCTGACGcc > 1:192350/1‑250 (MQ=255) gCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCATTTGT‑CCCCACGGAATAAA‑A‑CAC‑CCG‑CCGCAAATCTGCCACACCA‑CCAGCTGTTT‑TAGGGTGATAC‑CCC‑ATTTCATGACGCCaa > 1:238460/1‑250 (MQ=255) aaaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAgcc < 2:45389/251‑1 (MQ=255) aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTGGA‑AGG‑TT‑CCATTTTT‑CCCCCCCGAAAAAACA‑C‑C‑CCC‑CCGCACATCTGCCACACCC‑CCCCCTGTTT‑CAGGCTGTTAA‑CCC‑ATTTccttacgcgaccggc > 2:238080/1‑236 (MQ=255) aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACg < 1:238080/242‑1 (MQ=255) aaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTTT‑TCCCACGGAATAAACA‑C‑C‑CCG‑CCGAACATCTGCAAAAACA‑CCAGCCGTTT‑CAGGCTGATAA‑CCC‑ATTTCATTACGCCCAAgccgcc > 1:237214/1‑250 (MQ=255) aaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAgccgct < 1:241997/251‑1 (MQ=255) aTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAgccgctg < 1:200175/251‑1 (MQ=255) aGCCAAACCCAGCCCATGTAATGCGCAGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCATTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCTCGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGccgctgccgctg < 2:360497/251‑1 (MQ=255) aaCCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTc < 2:237214/251‑1 (MQ=255) aCCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTGGA‑AGG‑TTTC‑ATTTGT‑CCCCCCGGGATAAAAA‑A‑C‑CCC‑ACCAACAACTGCCACACCA‑ACAACCGTTTTCAG‑CTGGTCC‑CCC‑ATTTTATGGCCCCAAAgcccccgcccccgtatttc > 1:145457/1‑235 (MQ=255) aCCCAGCCCAGGTAACGCTCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGGCCACCGGCGGTG‑A‑AGG‑TTTCCAGTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACg < 2:171279/227‑1 (MQ=255) gcccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCagagag < 1:98993/251‑1 (MQ=255) cccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGGGTTTCC‑TTTTT‑CCCCACGGGATAAACA‑A‑C‑CCC‑ACGAACACCTTCAACACCA‑CCCGCTGTTT‑TAAGCTGAAAA‑CCC‑ACTTCATGACGCCAAAACCCCTGCCGCTGTATTCagagagg > 1:36159/1‑250 (MQ=255) cagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑TCCCCCGGGATAAACA‑C‑C‑CCC‑ACGCACAACTCCCAAACCA‑CCACATGGTT‑TAGGCTGATAA‑CCC‑ACTTCCTGACGCCCAAAACGCCGCCGCCGTAGTCATAGAGCgg > 2:400778/1‑251 (MQ=255) ggAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑G‑AGG‑ATTCCATTTGT‑CCCCACCGGATAAAAA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAACTGTTT‑CAGGCTGATAC‑CCC‑AATTCATGACGCCAAAACCGCTGCCGCCGGATTCAAAGAGCGGGCCTTCCTGccg > 1:168281/1‑249 (MQ=255) ggAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACCGAATAAACC‑C‑C‑CCC‑ACGAACATCTGCAACACCA‑CCAGCTGGTT‑TAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAAACGCCGCCCCTGTTTTCCGAGAGCGGGCCTTCCTGccg > 1:194594/1‑249 (MQ=255) aGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGCCAACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGAG‑C‑AGG‑ATTCCCTCTGT‑CCCCACGGGATAAA‑A‑C‑AACCG‑ACGAACATCTACGAAACCA‑CCAGCAGTTT‑CAAGCTCCAACACCC‑TTTACA‑GACGCCCAAGCCGCCTCCGCTGTATTCAAAGAGCCGGCCTTCCTGccacccctcctcgcc > 1:465900/1‑237 (MQ=255) gCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTcc < 1:45545/251‑1 (MQ=255) ttttCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCAATTGT‑TCCCCCGGAAAAAAAA‑C‑C‑CCC‑ACGGACATCTGCAACACCA‑CCAACTGTTT‑CAGGGTGATAA‑CCC‑CTTTCATTACGCCAAAACCACCGCCCCTGTATTCCAAGAGGGGGCCTTCCTGCAGCTCCCTCACGGCTTCCCCCAGGTCGaaacgccg > 1:371570/1‑245 (MQ=255) aaCAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGcc < 2:320965/251‑1 (MQ=255) cAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCATTTGT‑CCCCACGGAATAAACC‑C‑C‑CCC‑GCGGACATATGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAA‑CCC‑CTTTCATGACCCCAAAGCCGCAGCCGCTGTATTCAGAGAGCGGGCCCTCCTGCCGCTCCCCCTCGGCTTCCGCCAGGGCGAACGGCCGTTTGcccc > 1:466085/1‑250 (MQ=255) tAACCATGACGTCGACCTCCAGTTTTACGATGGCAATCCCCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAACCC‑C‑C‑CCG‑ACGAACAGCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCACAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTTCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGAt < 2:80564/250‑1 (MQ=255) ggACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTg < 1:392791/251‑1 (MQ=255) gACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AAG‑GTTCCATTTTT‑CCCCCCGGAATAAAAA‑C‑C‑CCC‑ACGAACATCTGCAAAACCA‑CCAGCTGTTT‑CAGGCTGATAA‑CCC‑ATTTCATGACGCCAAAACCGCCGCCGCTGTATTCCGAGAGCGGGCCTTCCTGCAGCCCCCGCTCGGCCTCCGCCCGGTCGCACGGCCGTTTTCCCATTTCGGTAAAggggg > 1:181139/1‑248 (MQ=255) ccGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGaa < 2:238460/251‑1 (MQ=255) ccGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑AGTTCATGAc < 2:439585/146‑1 (MQ=255) gACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCATTTGT‑CCCCACGGGATAAACA‑C‑C‑CCG‑ACGAACATCTGCAAAACCA‑CCAGCTGTTT‑TAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTTAGAGAGCGGGCCTTTCTGCAGCTCCCGCTCCGCTTCCGCCAGGGCGAACGGCAGTTTGTCCATTTCGGTAAAAGGGGCGAACg > 1:111328/1‑251 (MQ=255) ccaccaGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGGTT‑CAGGCTGATAc‑ccc < 1:71991/132‑1 (MQ=255) caccaGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCCTTTTT‑CCCCACGGGATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGGTAC‑CCC‑CTTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCCCCCGGTCGGACGGCAGTTTGCCCCTTTCGATAAAGGTGGCGAACGcac > 1:98855/1‑251 (MQ=255) aGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGCG‑A‑AGG‑GTTCCATTTGT‑CCCCCCGGAATAAACA‑C‑C‑CCC‑ACGAACATCTGCAACACCA‑CCAGCCGTTT‑CAAGCTGATAC‑CCC‑CTTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCCTCCTGCCGCTCCTGCTCGGCTTCCGCCAGGGCGAACGGCAGTTTGCCCCTTTCGATAAAAGTGGCGAACGCACAGGc > 1:284935/1‑251 (MQ=255) gTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGAG‑A‑AGGGTTTCCATT‑GT‑CCCCACGGAATAAAAA‑C‑C‑CCG‑ACGAACATCTGCCAAACCA‑CCCGCTGTTT‑CAAGCTGTTAC‑CCC‑CTTTCCTGAACCCCAAGACGCTGCCCCTGTATTCAGGAAGCCGGCCTTACTTCAGCTCCTGCTCCGCATCCTCCAGGTCGAACGGCCGGTTGCCCACTTCGATAAAGGTGGCCAACGccaaggcc > 1:53973/1‑244 (MQ=255) tttACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAATGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCGGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGcac < 2:83300/250‑1 (MQ=255) tttACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTTCATTTGT‑CCCCCCCGGATAAAAA‑C‑C‑CCC‑ACCAAAATCTGCAACCCCC‑CCAACTGTTT‑CAGGCTGATAC‑CCC‑AATTCTTGAAGCCAAAGCCGCTGCCCCTTTATTCAGAGACCGGGCCTTCCTGCAGCTCCCGCTCCGCGTCCGCCCGGGCGACAGGCAGTTTGCCCCTTTCGTCAAAGGATGCGAACGCACCGGcca > 1:138545/1‑248 (MQ=255) ggCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCa < 1:53010/251‑1 (MQ=255) ggCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AAG‑ATTCCATTTGT‑CCCCACGGAATAAAAA‑A‑A‑CCG‑ACGAAAATCTGCAACACCA‑CCAGCTGTTT‑CCGGCGGATAC‑CCC‑CTTTCATAACGCCAAAGACACTGCCGCTGGATTACGAAAGCGGGCCTTCCTGCAGCCCCTGCTCGGCTTCCGCCCCGGCGGACGGGAGTTTGCCCCTTTTGATAAAGGAGGGGGACGCACAGGcccacagagccc > 1:463425/1‑240 (MQ=255) gCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGGATAAACA‑A‑C‑CCG‑ACGAACCTCTGCA‑CACCAACCAGCTGTTT‑TAAGCGGATAC‑CCCCTTTTCA‑GACGCCAAAAACGCGGCCGCTGGCTTCAAAGAGCGGGCCTTCCTGAAGCTCCCGCCCGGCTTCCCCCAGGGCGAACGGCAGTTTGCCCCTTTCGGTAAAAGGGGCGAACGCACAAGCACAAAGCGcccg > 1:310027/1‑249 (MQ=255) gCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑GTTCCATTTGT‑CCCCACGGAATAAAAA‑C‑C‑CCC‑ACGAACCTCTTCAACACCC‑CCAGCTGTTT‑TAAGCTGATAA‑CCC‑ATTTCATGACGCCAAAGCCGCCGCCGCTGTATTCAACAAGCGGGCCTTCCCGCAGCTCCTGCCCGGCCTTCGCCCGGGCCAACGGGAGTTTTCCCATTTCGCTAAAGGTGGGGAACGCACAGGCACAAAgacccc > 1:160617/1‑245 (MQ=255) cAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCg < 2:98855/251‑1 (MQ=255) aGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCGGTTG‑CAGGCTGATAC‑CCC‑ATTCCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCGTCCGCCAGGTCGAACGGCAGGTTGCCCATTTCGATAAAGGTGGCg < 2:38858/219‑1 (MQ=255) agcagcagTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGct < 1:205974/251‑1 (MQ=255) agcagTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTGCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTGCGAGAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTg < 1:179874/251‑1 (MQ=255) ccGGCGGGG‑A‑AGG‑TTTCCAATTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGTCTCAGCgg < 2:455692/251‑1 (MQ=255) cggTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGAACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAACGGcc > 1:398133/1‑249 (MQ=255) g‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACC‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGTACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGa < 1:360303/250‑1 (MQ=255) g‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACCCCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGa < 2:73649/250‑1 (MQ=255) g‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGAt > 1:50704/1‑251 (MQ=255) aGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATa > 2:244339/1‑250 (MQ=255) ttCCATTTGT‑CACCACGGACTACACA‑A‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATCC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCAGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTACTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTAGATAAAGGTAGCGAACGCACAGGCACACACCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGACAgggagaaaagg > 2:299730/1‑241 (MQ=255) gT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACg < 2:293860/77‑1 (MQ=255) gT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACg > 1:293860/1‑77 (MQ=255) gT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACAGCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCCCAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGt < 2:466085/250‑1 (MQ=255) ccccACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGTGAt < 1:212484/251‑1 (MQ=255) aTAAACG‑C‑C‑CCG‑ACGAACAGCTGCCACCCCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACATGCACAAAGCGCCAGTACCAGCGGGATGCTCTTGCTCAGCGGCCAGTGATAAACGGTGTCGTTGATGTTGCTGAt < 2:455880/251‑1 (MQ=255) aaCA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGCGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAAc > 1:453491/1‑227 (MQ=255) aaCA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAAc < 2:453491/227‑1 (MQ=255) a‑c‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCAt > 2:228047/1‑146 (MQ=255) a‑c‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCAt < 1:228047/146‑1 (MQ=255) a‑c‑C‑CCG‑ACGAACATCCGCAACACCA‑AAAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGACGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAACGGCGGCGAACGAACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGTGCTGTTGCTGATggtggt > 2:429603/1‑251 (MQ=255) g‑acgaACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGTGATGTTGCTGATGTTGGTGGAAc > 1:205734/1‑251 (MQ=255) | TTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGTG‑A‑AGG‑TTTCCATTTGT‑CCCCACGGAATAAACA‑C‑C‑CCG‑ACGAACATCTGCAACACCA‑CCAGCTGTTT‑CAGGCTGATAC‑CCC‑ATTTCATGACGCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTTCCTGCAGCTCCTGCTCGGCTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTCGGTGATGTTGCTGATGTTGGTGGAAC > NC_000913/2846457‑2846955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |