breseq  version 0.39.0  
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence position mutation annotation gene description
MC JC 257,908 Δ776 bp insB9–[crl] insB9, insA9, [crl]
RA 803,662 C→A L54I (CTT→ATT)  ybhJ → putative hydratase YbhJ
JC JC 949,906 IS2 (+) +5 bp coding (239‑243/591 nt) ycaK → putative oxidoreductase YcaK
MC JC 1,299,499 Δ1,199 bp insH21 insH21
RA 1,905,761 G→A G25D (GGT→GAT)  mntP → Mn(2(+)) exporter
MC JC 1,978,503 Δ776 bp insB5–insA5 insB5, insA5
RA 3,560,455 +G intergenic (+589/+167) rtcR → / ← glpG DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG
RA 4,123,930 A→T V176E (GTA→GAA)  cytR ← DNA‑binding transcriptional repressor CytR
RA 4,174,041 A→T E320D (GAA→GAT)  birA → DNA‑binding transcriptional repressor/biotin‑[acetyl‑CoA‑carboxylase] ligase BirA
JC JC 4,522,412 IS1 (–) +8 bp coding (1676‑1683/1968 nt) yjhG ← D‑xylonate dehydratase

Unassigned missing coverage evidence
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 101130 101280 151 2 [1] [1] 2 murC UDP‑N‑acetylmuramate‑‑L‑alanine ligase
* * ÷ NC_000913 164488 164605 118 2 [1] [1] 2 [hrpB] [hrpB]
* * ÷ NC_000913 476379 476395 17 2 [0] [0] 2 ybaZ/ffs DNA base‑flipping protein/signal recognition particle 4.5S RNA
* * ÷ NC_000913 624515 624633 119 2 [1] [1] 2 fepB/entC ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC
* * ÷ NC_000913 805173 805231 59 2 [1] [1] 2 ybhJ putative hydratase YbhJ
* * ÷ NC_000913 907589 907664 76 2 [1] [1] 2 ybjT putative NAD(P)‑binding protein YbjT
* * ÷ NC_000913 1204286 1204312 27 2 [1] [1] 2 ymfN chimeric replication protein/phage terminase YmfN
* * ÷ NC_000913 1327880 1327967 88 2 [1] [1] 2 btuR cobinamide/cobalamin adenosyltransferase
* * ÷ NC_000913 1351162 1351211 50 2 [1] [1] 2 fabI/ycjD enoyl‑[acyl‑carrier‑protein] reductase/DUF559 domain‑containing protein YcjD
* * ÷ NC_000913 1984590 1984664 75 2 [1] [1] 2 araG arabinose ABC transporter ATP binding subunit
* * ÷ NC_000913 2375691 2375698 8 2 [0] [1] 2 menC o‑succinylbenzoate synthase
* * ÷ NC_000913 2597512 2597525 14 2 [1] [1] 2 purC phosphoribosylaminoimidazole‑succinocarboxamide synthase
* * ÷ NC_000913 2637820 2637978 159 2 [1] [1] 2 bamB outer membrane protein assembly factor BamB
* * ÷ NC_000913 2760801 2760828 28 2 [0] [1] 2 yfjJ protein YfjJ
* * ÷ NC_000913 3001047 3001160 114 3 [1] [1] 2 xdhA putative xanthine dehydrogenase molybdenum‑binding subunit XdhA
* * ÷ NC_000913 3045942 3046022 81 2 [1] [0] 2 ygfF/gcvP putative oxidoreductase YgfF/glycine decarboxylase
* * ÷ NC_000913 3092026 3092037 12 2 [1] [1] 2 gshB glutathione synthetase
* * ÷ NC_000913 3125865 3125866 2 2 [1] [0] 2 glcE glycolate dehydrogenase, putative FAD‑binding subunit
* * ÷ NC_000913 3239604 3239725 122 2 [1] [1] 2 alx/sstT putative membrane‑bound redox modulator Alx/serine/threonine:Na(+) symporter
* * ÷ NC_000913 3266476 3266514 39 2 [1] [1] 2 tdcA DNA‑binding transcriptional activator TdcA
* * ÷ NC_000913 3285007 3285062 56 2 [1] [1] 2 agaC galactosamine‑specific PTS enzyme IIC component
* * ÷ NC_000913 3423866–3424233 3424442–3424239 7–577 2 [1] [1] 2 [rrlD] [rrlD]
* * ÷ NC_000913 3691275 3691358 84 3 [1] [1] 2 bcsB cellulose synthase periplasmic subunit
* * ÷ NC_000913 3878937 3878973 37 2 [1] [1] 2 gyrB DNA gyrase subunit B
* * ÷ NC_000913 3908417 3908526 110 2 [1] [1] 3 pstB/pstA phosphate ABC transporter ATP binding subunit/phosphate ABC transporter membrane subunit PstA
* * ÷ NC_000913 4070439 4070477 39 2 [1] [0] 2 yihR/yihS putative sulfoquinovose mutarotase YihR/sulfoquinovose isomerase
* * ÷ NC_000913 4101861 4101935 75 2 [1] [1] 2 kdgT 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter

Unassigned new junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078052 (0.180)12 (1.210) 9/278 0.1 86.4% coding (305/630 nt) ycfK protein StfP
?NC_000913 = 1209602 2 (0.200)intergenic (‑483/‑83) tfaE/pinE putative tail fiber assembly protein TfaE/site‑specific DNA recombinase