New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	2 (0.180)	12 (1.210)	9/278	0.1	86.4%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	2 (0.200)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

CATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGAC  >  NC_000913/1209364‑1209852                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                           cATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATACCC‑GCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAAc                                                                                                                                                                                                                                               >  1:97554/1‑251 (MQ=255)       cctccGTTGCATACCCCTGAATACTGAAAATAGAGCGACCTGTATCAAGCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAAGTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGGTCCATGGCATTGCAGCCAGCTGGTTGGCGGAGTGGCTGAGGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagg                                                                                                                                                                                                                                          >  1:130287‑M2/1‑233 (MQ=255)                                                      aTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGGCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGGCAGCCTGTTGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTACTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgctttgatatcgccaa                                                                                                                                                                                            <  1:137278‑M2/250‑65 (MQ=255)                                                                            nacNAATNANNTNNCCANGTAAATCAGGCAATTTATTTGNNGGATAAGCCNTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCNAGCCTGTTGNNGGNGTGGCNGNNNGNNNCGNAACCGGGACACCAACAGGTNATNNAGAGccntctcccaaaccaaggttttcgagagc                                                                                                                                                                                                                               >  2:62835‑M2/2‑164 (MQ=255)                                                                                                                                        ccGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTAGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc                                                                                                                                                                                        <  1:81993/172‑1 (MQ=255)                                                                                                                                                                cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAAc                                                                                                     >  1:35186/1‑231 (MQ=255)                                                                                                                                                                                                      nntgaNGGCCACGGAACCGGGACACCANNAGGTAATGCNGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccganttgatatcgnnaancggagncnnncnnnttnacagcagcgcgcgaagggcngtnngtaactngtcgtgccgccccttctccaggctgg                                                                                                                 >  2:62224‑M2/3‑42 (MQ=255)                                                                                                                                                                                                      gCTGACGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctgg                                                                                                                 <  1:62224‑M2/181‑140 (MQ=255)                                                                                                                                                                                                           nggcCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa                                                                                                                                                                                            <  1:166763‑M2/100‑65 (MQ=255)                                                                                                                                                                                                           aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaa                                                                                                                                                                                            >  2:166763‑M2/1‑37 (MQ=255)                                                                                                                                                                                                             nccaCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc                                                                                                                              <  1:159939‑M2/160‑127 (MQ=255)                                                                                                                                                                                                                     aCCGGGACACCAACAGGTAATGCAGAGccttctcccaacccaaggttttcgagagcagtttgcacagtgcaatccgctttgctatagccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggcacc                                                                                                             <  1:242089‑M2/170‑144 (MQ=255)                                                                                                                                                                                                                                        aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggt                                                                                                                                                    <  2:163594‑M2/112‑105 (MQ=255)                                                                                                                                                                                                                                        aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggn                                                                                                                                                    >  1:163594‑M2/1‑8 (MQ=255)                                                                                                                                                                                                                                               gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggcttcttgcggcttaacagcagcgcgcgacgtgcggtaagtaactggtcgtgccgccccttctccaggctggcaccggatgcctccaccacgctgcaaagttcctcctgcaacatgtcaaagtagtcatcatccagatcggtggcaggcgtgccggtctgggggttaccacgggtaaaaccgt  <  1:249764‑M2/251‑251 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                           CATGATCCTCCGTTGCATACCCCTGAATACTTAAAATAGAGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGAC  >  NC_000913/1209364‑1209852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.