New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	2 (0.180)	12 (1.210)	9/278	0.1	86.4%	coding (305/630 nt)	ycfK	protein StfP
	?	NC_000913	= 1209602	2 (0.200)					intergenic (‑483/‑83)	tfaE/pinE	putative tail fiber assembly protein TfaE/site‑specific DNA recombinase

ACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGG  >  NC_000913/1207556‑1208038                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          aCGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACGTCGCGCGCTGCTGTTAAGCCGCAAGAAGCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc                                                                                                                                                                                                                                          <  1:249764‑M1/251‑2 (MQ=255)                                                                                                            ggTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCTATAGCAAAGCGGATTGCACTGTGCAAACTGCTCTCGAAAACCTTGGGTTGGGAGAAGGctctgcattacctgttggtgtcccggt                                                                                                                                                                                                                <  1:242089‑M1/170‑28 (MQ=255)                                                                                                                ccAGCCTGGAGAAGGGGCGGCACGACNAGTTACNNACNGCCCTTCGCGCGCTGCTGTNAANNNGNNNGNCTCCGNTTNNCGATATCAANTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctcngcattacctnntggtgtcccggttccgtggccntcann                                                                                                                                                                                                 >  2:62224‑M1/1‑139 (MQ=255)                                                                                                                ccAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccgtcagc                                                                                                                                                                                                 <  1:62224‑M1/181‑43 (MQ=255)                                                                                                                             ggggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggn                                                                                                                                                                                                        <  1:159939‑M1/161‑36 (MQ=255)                                                                                                                                                   nccgCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                                                                                                                                                                                   >  1:163594‑M1/2‑104 (MQ=255)                                                                                                                                                   acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat                                                                                                                                                                                                                                   <  2:163594‑M1/112‑9 (MQ=255)                                                                                                                                                                cgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGGAGGAGCAAAACTCAATGCAGCAACGGCTACATTCGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCg                                                                           >  1:220255/1‑251 (MQ=255)                                                                                                                                                                                           ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct                                                                                                                                                                                                      >  2:166763‑M1/1‑64 (MQ=255)                                                                                                                                                                                           ttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccn                                                                                                                                                                                                      <  1:166763‑M1/101‑38 (MQ=255)                                                                                                                                                                                           ttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcagtacctgttggtgtcccggttccgtggccttcagccacgccgccaacaggctgcctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactgccaaaggcttatccgacaaataaattgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggat                                                 <  1:137278‑M1/250‑187 (MQ=255)                                                                                                                                                                                                                              gCTCTCGAAAACCTTGGTTTGGGAGANGGctctnnatnacctgttggtgtcccggttncgnnncnnncngccacnccnncaacaggctngctgaaatgcaatggtgccgctttttctgctgaagaatacccggaactggcaanggcttatccnncaaataaattgcctgatttacntggnnanntnattngtn                                                                       >  2:62835‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                  ncannaaatngggTTTGGGAGAAGGAGCAACCTTNAAGTCAGCAACGGTTACATTATGACGCTCTGNTNTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCANTCAGTGGGGGNGGANNGCCGNANANGCATCTGCCTCTGGGGGGGATTGAAATACNGTTGTATTCCCGGTTGCGTTTAANNATNNNTGNNTTGcc                                                <  2:201545/201‑1 (MQ=255)                                                                                                                                                                                                                                         ccTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccctcagccactccgccaaccagctggctgcaatgccatggacccgctttttctgctgaagaatacccggaactggcaaaggcttatccgacaaataacttgcctgatttacgtggtgagtttattcgtggctgggatgacgggcgggggcttgatacaggtcgctctattttcagtattcaggggtatgcaacggagg  >  1:130287‑M1/1‑18 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          ACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGG  >  NC_000913/1207556‑1208038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.