Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,098,155 | 0 | A | C | 26.4% | 123.8 / 10.9 | 74 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
Reads supporting (aligned to +/- strand): ref base A (37/16); new base C (0/19); total (37/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.45e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TCACCGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACGCCTCAGCGATACCTGAACCGC > NC_000913/4097905‑4098401 | ccACCGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGGTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTa < 2:304725/250‑1 (MQ=255) cACCGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTAc > 1:63122/1‑251 (MQ=255) cACCGGGGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACACGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTCTTGCAGCAGGTGCGACAGCTTGTTGCACAGTTGG‑AACAGTCGGAAGGGGTAAATGATTTAc > 2:158261/1‑251 (MQ=255) ccGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTAccc > 2:338000/1‑251 (MQ=255) cGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGcc < 2:383615/251‑1 (MQ=255) cGTACGCGATCATGATCGGAATCTGTATGAACATCCCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGAGGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCgaga < 1:236362/251‑1 (MQ=255) gaCGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATGGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATc < 1:300696/250‑1 (MQ=255) cATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTAt < 1:348737/251‑1 (MQ=255) gatgggCATCTGTATGAACATACCGATAATCTGTGTCGAACAAATTGGCTTTATCGTCCGCCGAATCGTTTTCAGTTCCCCGCCGGGCTGAATCAGTTGCGGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGAAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCa < 2:152625/247‑1 (MQ=255) gATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATAGATTTCAGTTTCTCGCAGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGc > 1:47710/1‑250 (MQ=255) aTCGGCATCTGTATGAACATACAGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCATTTTCTCGCCGGGGTGAATCGGGTTCTGCCACAAGAGCTGGCTGGGCAGAATCCGTCTCTCTGGCGCGTTAACCACAGCGTATTGCAGCACGAGCGTCAGCTGGTTGCACAGCTGG‑AACAGCAGGCCGGGGAAAATGATTTATCCTCGACCGACCGTCGCGAGATCTTGTATATGcc > 2:231845/1‑249 (MQ=255) tCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAAt > 1:336425/1‑251 (MQ=255) gCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAACTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTAc > 1:225019/1‑251 (MQ=255) gTATGAACATCCCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACGGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGctct < 1:196397/251‑1 (MQ=255) tATGAACATACCGATAATCTTTGTCGGCCCAATGTGCTGTATCGCTCGCCGGCTCGATTTCAGTTTCCCGCCGGCCTGATACGGTTGCTGCCACAAGAGCTGGAGGGGAATTATCCGTCCCACGGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGctct < 2:376330/250‑1 (MQ=255) aTGAACATACCGATAATCTGTGTCTTACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGA‑ACCAGCAGGAAGGGGAAAATGATTTACCCTCCACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCtt < 1:40729/250‑1 (MQ=255) gATAATCTGAGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGCCCGCCAGTCGCGAGCTCTTGTTTATGCAATTACTGCTCTTGCTGCGTaaa > 2:181691/1‑249 (MQ=255) aaTCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGc > 2:154335/1‑249 (MQ=255) tCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACACGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGAAATTACTGCTCTTGCTGCGTAAAAGCAGtt > 2:130593/1‑251 (MQ=255) gtgtCTGACCAATGTGCTGTATCGCTCGCCGGTTCGTTTTCAGTTTCTCGCCGGGCGGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCCCACTGGCGCGTTAACCACAGCGTATTGCAGCAGTGGCGACAGCTGGTTGCACAGAGGG‑AACAGAAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGtt < 2:303853/248‑1 (MQ=255) gtCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCACTTTCTCCCCGCGTTGAATCAGTTGATGCCACAAGAGCTGCCTGGGCAGTATCCGTCTCACTGGCGCGTTAACCACCGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGCGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGc > 1:25748/1‑249 (MQ=255) gcccAATGTGCTGTACCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGTTGAATCAGTGGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACATCGGGTTGCACAGAGGG‑AACGGCAGGAAGGTGAAAGTGATGTGCCCTGGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGgag < 1:271051/248‑1 (MQ=255) gACCCATGTTCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGTTGAATCAGTTGCTGCCACAAGCGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGGAGGGGAAACTGATTTATCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCCATTACTGCCCTTGCCGCGTAAAAGCAGTTTGCAgg > 2:40518/1‑248 (MQ=255) aCCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGgaga > 1:40190/1‑250 (MQ=255) gCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGaa < 1:317400/250‑1 (MQ=255) gTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCCGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAAc > 2:357240/1‑250 (MQ=255) tcgcCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGt > 2:319724/1‑222 (MQ=255) ccgcCGGATCGATTTCATTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGt < 1:319724/221‑1 (MQ=255) cGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGt > 2:51387/1‑251 (MQ=255) ggATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGtc > 1:159630/1‑251 (MQ=255) gATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGtct > 1:168287/1‑251 (MQ=255) aTTTCAGTTTCCCGCCGGGCTAAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGAGGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACt < 1:154335/251‑1 (MQ=255) cgttttctccgcgggctaagtcttttGCTGCCACAAGAGCTGGAGGGGCAGCATCCGTCACACTGGCGCGTTAACCACAGCGTATTGCAGCGGGTGCGACATCTGGTTGCACAGATGG‑AACAGAGGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCt < 2:71460/227‑1 (MQ=255) cgttttCCCGCCGGGGTTAATCGGTTGCTGCCACAGGAGCGGGATGGGCAGTCTCCTTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGGGCGACTGCTGGTGGCACAGAGGG‑AACAGCAGGAAGGGAAAAATGATTTCCCCGCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCt < 2:72823/248‑1 (MQ=255) cAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGAAGGTGCGACAGCTGTTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGc < 1:338000/250‑1 (MQ=255) aGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGGGCGTTAACCGCAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑CACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATATTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCtt > 1:248365/1‑251 (MQ=255) tgctcGCCGGGCTGAAGCAGTTGCGGCCACAAGAGCTGGATGGGCAGTATCCGCCTCACGGGCGCTTTAACCGCAGCGTATTGCAGCAGGTGCGACAGTGGGGTGCAGAGAGGG‑AACAGCAGGAAGGGTAAAATGATTTGCCCCGGACCGCCAGTCGCGAGATCTTGGTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCTCGTCTCAACTTGCTTct < 1:380845/248‑1 (MQ=255) ctcGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGCTGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTctggc > 1:171780/1‑251 (MQ=255) actgtgccgtccACAAGAGCTTGGTTGGCAGTAGCCTGCTCACTGGCGCATTAACCACTGCGGATTGCAGCAGGTGGTTCAGTTGGTTGCACAG‑TGTTAAAAGAAGGAAGGGGAAATTGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATTCAATTACGGCTCTTGGGGCTTAAAATCAGGTGGCAGGAGAACCTGAAAATCAGTGCATCACGTCTCAACTTGCTTCTGGCCTGGCGGGAGGAcc < 1:409165/241‑1 (MQ=255) tgctgcCACAAGAGCTGGATGGGCAGTATCCGTCTCATTGCCGCGTTCACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTCTGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCAtttt > 1:27416/1‑251 (MQ=255) tgctgcCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTACCCACCGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACCGCAGGAAGGGGCAAATGATTTACCCTCGACCGCCAGTCGAGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGGGGACCAtttt > 2:209082/1‑251 (MQ=255) tgctgcCACAAGAGCGGGAGGGGCAGTATCCTGCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGA‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCAttt < 2:136974/250‑1 (MQ=255) ggccgcCACAAGAGCTGGAGGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGTTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCAtttt < 1:165654/247‑1 (MQ=255) ccaaaaGAGCTGGATGGGCATTATCCGTCTCACTGGCGCGTTAACCACAGCTTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGTCTGGAGGACCATTTTGCCGa < 1:356777/247‑1 (MQ=255) gagCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAggg > 2:85445/1‑250 (MQ=255) cTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGAATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACAGCCAGTCGCGAGATCTTGTTTATGCAATTCCTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTATCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGa > 2:113486/1‑250 (MQ=255) ggagggggataatcctcctcgcTGGCGCGTAAACCCAAGCGTATTGAGGCGGGTGCGACACCTGGTTGCAAGGATGG‑AACAGAAGGAAGGAAAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAAtt < 2:306511/230‑1 (MQ=255) ggaggggCGGTATCCGTCTCACTGGCGCGTTAACCACAGCGGATTGCAGCAGGTGCGACAGCTGTTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAAGACCATTTTGCCGATGAGGTGAAtt < 1:347430/247‑1 (MQ=255) ggATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGAAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAAtt > 2:270466/1‑251 (MQ=255) gtGGGCAGTTTCCGTCTCACTGTCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTgg < 1:111109/250‑1 (MQ=255) ggCAGTTTCCGTCTCACTGGCGCGTTAACCACAGCGTATGGCAGCAGGTGCAACAGCTGGTTCCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGAt < 1:148267/251‑1 (MQ=255) tATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGGTCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGt > 2:60868/1‑251 (MQ=255) gTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGAAAGCTGGGTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGCCCATTTTGCCGATGAGGTGAATTGGGAGGCCGGGGCgg > 2:208595/1‑251 (MQ=255) gTCTCACTGACGCGTTAACCACAGGGCATTGCAGCAGGCGCGCCCGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTCCTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCgg > 2:187690/1‑251 (MQ=255) ccactgcgcagTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGTTTGCCCAGAGGG‑AACAGCAGGAGGGGGAAAATGATTGCCCCTCTACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGAGGAGGTGAATTGGGATGCCGTGGCGGATc < 2:47710/241‑1 (MQ=255) ggCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAAttt > 1:356197/1‑251 (MQ=255) gcgTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTtct < 1:85445/251‑1 (MQ=255) ccACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCAc < 1:84101/251‑1 (MQ=255) aGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCg > 1:1141/1‑251 (MQ=255) gTATTGGAGCAGGTGCGACCGCTGGTTGCACAGAGGG‑AACAGAAGGAAGGGGAAAAGGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TAc < 2:101014/251‑1 (MQ=255) ggcagcaGGTGCGACAGCTGGTGGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTa < 2:18750/250‑1 (MQ=255) gcgacatgtggtggCACAGTGGG‑AACAGGAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACAGCGGCAGc < 2:77573/243‑1 (MQ=255) gacggttgtgtGCACAGAGGG‑AACATGAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCtt < 2:40190/241‑1 (MQ=255) ggTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAagcagc < 1:231573/251‑1 (MQ=255) g‑AACAGCAGGAAGGGGAGAATGATTTACCCTCGACCGCCCGTAGCGAGCTCTTGTTTATGCAATTACTGCTCTTGCTGCGTCAAAGCAGTTTGCAGGAGAACCAGGAAAACAGCGAATCACGTCTAAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGAGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCCATGCG‑TACTCGACATCGGCCGCCTTAGCAGGAAACGggacggac > 2:209168/1‑251 (MQ=255) aaCAGCAGGAAGGGGAAAATGATTTCCCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑GACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACg < 1:270466/251‑1 (MQ=255) aaCAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTCCATCGGCAGCTTAAGCCGCAAACGGGACTGACg > 2:117761/1‑251 (MQ=255) aaCAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACg > 1:97853/1‑251 (MQ=255) gcagGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGCGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCCGTTTGCAGGAGACCCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGCTGCCGTGGCGGCTCCATTTTTTCTTTCACTGCG‑TACGCTCCCTCGGCAGCCTAAGAAGCAAACGGGGCTGGCGCCTc > 2:292274/1‑251 (MQ=255) ggAAGGGGAAAATTTTTTCCCCGCTACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCATCGTTCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGCGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACGCCTCAGc < 1:280011/251‑1 (MQ=255) gAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGCGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCCCTGCG‑TACGCTACACCGGCAGCTTCAGCAGCAAAAGGGACTGACGCCTCAGCg > 2:365587/1‑251 (MQ=255) aaGGGTAAACTGAATTACCCTAGACCGCCCGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTCGCAGGAGACACTGGACAACAGCGCATCACGTCTCAACTTGCTTCTGGTCTGGCTGGAGGACAATTTTGCCGCTGAGGTGAATTGGGATGCCGTGGCGGATCCCTTTTCTCTTTCCATGCGGTA‑GTTACACCGGCAGGTTAAACCGCAACCGGGCATGACGCCTCAGccg > 2:285065/1‑249 (MQ=255) aaGGGGAAAATGATTTCCCCCCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCTTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGGGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACGCCTCAGCGa < 1:292274/251‑1 (MQ=255) gggaaaaaTGATTTACCCTCGTCCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACGCCTCAGCGATa < 1:130593/247‑1 (MQ=255) aTTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGGCGCCTTCGCGATACCTGAACCGc > 2:353774/1‑251 (MQ=255) | TCACCGGTGGCACGGTCTGTTTCGTACGCGATCATGATCGGCATCTGTATGAACATACCGATAATCTGTGTCTGACCAATGTGCTGTATCGCTCGCCGGATCGATTTCAGTTTCTCGCCGGGCTGAATCAGTTGCTGCCACAAGAGCTGGATGGGCAGTATCCGTCTCACTGGCGCGTTAACCACAGCGTATTGCAGCAGGTGCGACAGCTGGTTGCACAGATGG‑AACAGCAGGAAGGGGAAAATGATTTACCCTCGACCGCCAGTCGCGAGATCTTGTTTATGCAATTACTGCTCTTGCTGCGTAAAAGCAGTTTGCAGGAGAACCTGGAAAACAGCGCATCACGTCTCAACTTGCTTCTGGCCTGGCTGGAGGACCATTTTGCCGATGAGGTGAATTGGGATGCCGTGGCGGATCAATTTTCTCTTTCACTGCG‑TACGCTACATCGGCAGCTTAAGCAGCAAACGGGACTGACGCCTCAGCGATACCTGAACCGC > NC_000913/4097905‑4098401 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |