mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,363 | 0 | C | . | 74.4% | 82.4 / 38.1 | 39 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 2,173,364 | 0 | C | . | 74.4% | 83.2 / 37.4 | 39 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 288,382 | 0 | A | C | 42.9% | 31.7 / 13.4 | 37 | T532P (ACC→CCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 3,375,528 | 0 | C | A | 30.8% | 54.5 / 12.0 | 40 | D220E (GAC→GAA) | dcuD | putative transporter DcuD |
| * | NC_000913 | 867,586 | 0 | A | T | 28.3% | 122.3 / 13.3 | 60 | M23L (ATG→TTG) | gsiA | glutathione ABC transporter ATP binding subunit GsiA |
| * | NC_000913 | 1,967,282 | 0 | T | C | 26.0% | 79.2 / 10.6 | 51 | G52G (GGA→GGG) | cheY | chemotaxis protein CheY |
| * | NC_000913 | 37,338 | 0 | T | G | 25.8% | 119.4 / 10.0 | 66 | T163P (ACC→CCC) | caiC | carnitine‑‑CoA ligase |
| * | NC_000913 | 651,267 | 0 | A | T | 23.4% | 147.3 / 12.4 | 64 | L197* (TTA→TAA) | citC | citrate lyase synthetase |
| * | NC_000913 | 2,173,360 | 0 | A | . | 23.1% | 91.6 / 17.0 | 39 | intergenic (‑487/+922) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 375,621 | 0 | A | G | 22.0% | 135.8 / 10.5 | 59 | I55V (ATA→GTA) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| * | NC_000913 | 2,014,222 | 0 | C | A | 21.7% | 99.2 / 10.5 | 60 | Q332K (CAA→AAA) | fliF | flagellar basal‑body MS‑ring and collar protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2330767 | 45 (0.920) | 3 (0.060) | 3/484 | 4.3 | 5.6% | intergenic (‑970/+3569) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| ? | NC_000913 | 2540842 = | 57 (1.160) | coding (838/876 nt) | cysW | sulfate/thiosulfate ABC transporter inner membrane subunit CysW | |||||
| * | ? | NC_000913 | = 1746219 | 29 (0.590) | 3 (0.060) | 3/480 | 4.3 | 6.5% | intergenic (‑92/‑216) | ydhQ/valV | putative adhesin‑related protein YdhQ/tRNA‑Val |
| ? | NC_000913 | = 2406543 | 57 (1.170) | coding (99/939 nt) | lrhA | DNA‑binding transcriptional dual regulator LrhA | |||||
| * | ? | NC_000913 | 49670 = | 37 (0.750) | 4 (0.080) +G |
3/482 | 4.3 | 10.0% | intergenic (+39/‑153) | kefC/folA | K(+) : H(+) antiporter KefC/dihydrofolate reductase |
| ? | NC_000913 | = 1911098 | 35 (0.710) | coding (823/1374 nt) | yebQ | putative transporter YebQ | |||||