New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1746219	29 (0.590)	3 (0.060)	3/480	4.3	6.5%	intergenic (‑92/‑216)	ydhQ/valV	putative adhesin‑related protein YdhQ/tRNA‑Val
	?	NC_000913	= 2406543	57 (1.170)					coding (99/939 nt)	lrhA	DNA‑binding transcriptional dual regulator LrhA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCACGGTATTTTCGGCTCTTCCGCCAGCTTCAACAATCAACTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGCTAATATTCGTCCCCGTTGTCACCTACAACGTTGCGTTCATAGCTCAGTTGGTTAGAGCAC  >  NC_000913/1745991‑1746462                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                    aCCACGGTATTTTCGGCTCTTCCGCCAGCTTCAACAATCAACTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTg                                                                                                                                                                                                                               <  1:15684/251‑1 (MQ=255)       gTATTTTCGGCTCTTCCGCCAGCTTCAACAATCAACTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATacac                                                                                                                                                                                                                         <  1:326482/251‑1 (MQ=255)                                 aacaaTCAACTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTATTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCCCGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTa                                                                                                                                                                                                >  1:293761/1‑250 (MQ=255)                                         aCTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGGAAATGCGATc                                                                                                                                                                                       <  2:37738/251‑1 (MQ=255)                                                   aGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTAt                                                                                                                                                                                                        <  1:127214/224‑1 (MQ=255)                                                   aGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTAt                                                                                                                                                                                                        >  2:127214/1‑224 (MQ=255)                                                            cGTCGCGCCATGGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCGGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCtt                                                                                                                                                                    <  2:452432/251‑1 (MQ=255)                                                            cGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCtt                                                                                                                                                                    <  1:129005/251‑1 (MQ=255)                                                             gTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGAt                                                                                                                                                                                                   <  1:89501/219‑1 (MQ=255)                                                             gTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGAt                                                                                                                                                                                                   >  2:89501/1‑219 (MQ=255)                                                             gTCGCGCCAATGAACTCGCCGGTCTTAACCATTTGCACGTTCACGTAGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGACTTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTg                                                                                                                                                                   >  1:385333/1‑251 (MQ=255)                                                                            tCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGa                                                                                                                                                                                                                       <  1:109013/184‑1 (MQ=255)                                                                            tCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGa                                                                                                                                                                                                                       >  2:109013/1‑184 (MQ=255)                                                                              gCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAAtata                                                                                                                                                  <  2:41833/251‑1 (MQ=255)                                                                                       aaCAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTg                                                                                                                                         >  1:101619/1‑251 (MQ=255)                                                                                        aCAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAACATATAGCCAATTTGc                                                                                                                                        >  2:385542/1‑251 (MQ=255)                                                                                                cACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTAGCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCTCCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGc                                                                                                                                <  2:413464/251‑1 (MQ=255)                                                                                                  cGTTCACGCCGCTCACCAAGTTTTCAGCATCCAATCCCATCATACCTTCCTTTGCTGCATATGTGTGCCTTTATTGCCACCTACGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATACTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGctc                                                                                                                              >  2:36426/1‑251 (MQ=255)                                                                                                       ccGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCa                                                                                                                          >  1:136345/1‑250 (MQ=255)                                                                                                         gTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAAc                                                                                                                       >  1:94061/1‑251 (MQ=255)                                                                                                                atcaAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGATGAATCTGGGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGa                                                                                                                 >  1:243370/1‑250 (MQ=255)                                                                                                                            gCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGCCAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGaa                                                                                                     >  2:226861/1‑250 (MQ=255)                                                                                                                                 aGATCCCATGATTTATTCCTTGGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTGTAAACTCTGATACACTAATTATTGGGTTGTAGCAGATGTAAATGCGATCCTGAATAAAAATCACCCGTGCAAATCAACAAAATATAGTCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCTCAGAAAATTAc                                                                                               <  2:182779/251‑1 (MQ=255)                                                                                                                                                                                    aagtgcaaagggtcgggaggaATTATCCAAGACAGCTTCGAGATGCTGGCAAAAGACTCAGTTCATACTCTGATCCACGAATTATTGGGTCGTATCAAATGTAAATGCGATCCTGAATAAAAATCACCCATGCAAATCAACACAATCTAGCCACTCTGCTTCAAAGATCTGCACACGGTCGACCTAGTGAAGAAAATTACGTTTTGTCTATTGCCACCTTCACACTCTGCCGCTAATATTCGTCCCCGTTg                                            >  2:418198/16‑251 (MQ=255)                                                                                                                                                                                                  cGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGCTAATATTCGTCCCCGTTGTCACCTACAACGtt                              <  1:352614/251‑1 (MQ=255)                                                                                                                                                                                                          ttATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCCGATGTAAATGCGATCCTGACTAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGCTAATATTCGTCCCCGTTGTCACCTACAACGTTGCGTTCAt                      >  1:405065/1‑251 (MQ=255)                                                                                                                                                                                                          ttATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGGTAATTTTCGTCCTCGTTGTCACCTACAACGTTGCGTTCa                       <  2:76403/250‑1 (MQ=255)                                                                                                                                                                                                                   aCAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAATTATAGCCAATTTGCTTaa                                                                                                                                    <  1:299828/132‑1 (MQ=255)                                                                                                                                                                                                                              aTGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGCTAATATTCGTCCCCGTTGTCACCTACAACGTTGCGTTCATAGCTCAGTTGGTTAGAGcac  >  1:344065/1‑251 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                    ACCACGGTATTTTCGGCTCTTCCGCCAGCTTCAACAATCAACTCGCCTTCAGTAAGTTGCGTCGCGCCAATGACCTCGCCGGTCTTAACAATTTGCACGTTCCCGTCGCTCATCAAGTTTTTCGCATCAGATCCCATGATTTATTCCTTTGCTGCATCTGTGTGCCTTTATTGCTACCTAAGTGTAAAGGCTACGGAGGATTTATCCACGACAGATTTGAGATGGTGGCAAACAACTCTGTTTAAACTCTGATACACGAATTATTGGGTTGTATCAGATGTAAATGCGATCCTGAATAAAAATCACCCTTGCAAATCAACAAAATATAGCCAATTTGCTTAAAAGCTCTGCAAACGGTCGAAATAGCGCAGAAAATTACGTTTTGCCTCTTGCCACCTTCCCACTCTGCCGCTAATATTCGTCCCCGTTGTCACCTACAACGTTGCGTTCATAGCTCAGTTGGTTAGAGCAC  >  NC_000913/1745991‑1746462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.