New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2330767	45 (0.920)	3 (0.060)	3/484	4.3	5.6%	intergenic (‑970/+3569)	yfaQ/yfaT	tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT
	?	NC_000913	2540842 =	57 (1.160)					coding (838/876 nt)	cysW	sulfate/thiosulfate ABC transporter inner membrane subunit CysW
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCAGCGGCTGATTGCTGTTTGCCGCTTTATCCCACGCATATTGCTGAACCTGTGGCATCACCGTGGACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2330586‑2330767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGATTCTCCAGGCGCCACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGG  >  NC_000913/2540842‑2541091                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAGCGGCTGATTGCTGTTTGCCGCTTTATCCCACGCATATTGCTGAACCTGTGGCATCACCGTGGACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCCCTGATTCTCCAGGCGCCACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAAC                                                                                                                                                                                        >  2:319531/1‑250                                                                                                        GACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCCCCTGATTCTCCAGGCGCCACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCAC                                                                                <  1:319531/251‑1                                                                                                                                                                                      CCCTGATTCTCCAGGCGCCACTGCAACATTCTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGG  <  2:17305/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAGCGGCTGATTGCTGTTTGCCGCTTTATCCCACGCATATTGCTGAACCTGTGGCATCACCGTGGACTTCAACTGCGCTTTTTTCAGCAACGTCATGGTTAAGACGTTTGCCACCGCATCTGCCAGTGGAGACTCCGGTGTATCGAGGATCAGGCTATCATTGATATCGCGGGTGTCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2330586‑2330767 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGATTCTCCAGGCGCCACTGCAACATACTTTTTAAAAACAGGGTGATAATCGCCATCAGCGTTAACAGCGCCGCAGCGGTAAAGGAGCCGACGGTGTTGTAGTCCTGCTCCAGCAATTCAATCTGTAACGGCAGCGACAGGGTTTCGCCGCGAATCGAGCCGGAAACCACCGACACCGCGCCAAACTCGCCAATTGCGCGGGCGTTGGTCAACACCACGCCATAAAGCAGCGCCCAGCGGATGTTCGG  >  NC_000913/2540842‑2541091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.