mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,621,118 | 0 | A | C | 40.0% | 47.0 / 12.1 | 47 | V7G (GTG→GGG) | eamA | cysteine/O‑acetylserine exporter EamA |
| * | NC_000913 | 884,184 | 0 | A | G | 36.2% | 65.7 / 12.1 | 59 | E171G (GAG→GGG) | mdfA | multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| * | NC_000913 | 4,256,061 | 0 | C | T | 34.5% | 32.8 / 10.6 | 29 | E136K (GAA→AAA) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 2,244,212 | 0 | C | T | 33.3% | 64.1 / 13.8 | 56 | G101G (GGC→GGT) | yeiG | S‑formylglutathione hydrolase/S‑lactoylglutathione hydrolase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 32.6% | 75.8 / 10.3 | 50 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.0% | 28.0 / 10.1 | 21 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,135,781 | 0 | G | T | 29.8% | 75.0 / 16.4 | 57 | R197R (CGC→CGA) | pitB | metal phosphate:H(+) symporter PitB |
| * | NC_000913 | 1,158,624 | 0 | T | G | 29.0% | 114.9 / 10.3 | 69 | G252G (GGT→GGG) | ptsG | glucose‑specific PTS enzyme IIBC component |
| * | NC_000913 | 4,171,557 | 0 | C | G | 26.7% | 87.3 / 52.2 | 60 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 1,335,705 | 0 | G | T | 25.4% | 102.4 / 10.6 | 63 | intergenic (+38/‑126) | ymiC/acnA | protein YmiC/aconitate hydratase 1 |
| * | NC_000913 | 1,466,276 | 0 | T | C | 23.5% | 133.7 / 11.7 | 69 | pseudogene (885/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 1,335,717 | 0 | C | T | 22.6% | 117.1 / 10.4 | 62 | intergenic (+50/‑114) | ymiC/acnA | protein YmiC/aconitate hydratase 1 |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.4% | 83.0 / 25.5 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,377,160 | 0 | C | A | 20.0% | 112.3 / 10.8 | 65 | A145S (GCC→TCC) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 68 (1.040) | 4 (0.070) | 4/438 | 4.5 | 7.6% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 36 (0.620) | intergenic (‑552/+227) | ynaM/uspF | protein YnaM/universal stress protein F | |||||