| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,276 | 0 | T | C | 23.5% | 133.7 / 11.7 | 69 | pseudogene (885/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (33/19); new base C (15/1); total (49/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.66e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGG > NC_000913/1466028‑1466520 | cacaACTGTGTGGTTGTTATTACGTGTGAGAATGCCACAGTAAAAAACAATGCCAAAACCACCGTTGACGGTAAATATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTTGATGTCAGCGGCGTCGTTCACGGTATTGATATCGCCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGGACGTTACCGATCCGGTGTCCATGGGTATCCAGATCGACGGTg < 2:229445/250‑1 (MQ=18) acaACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCCAACCCGCGTCAATGGGTATCCAGATTGACGGCGAc > 1:60637/1‑251 (MQ=18) tGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACACTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGTATTGATATCAACGGAGACAGCGCGACGGTGGATCACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGGATCCAGATCGACGGTGCCAAGGccc > 1:290911/1‑250 (MQ=18) gAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCCGCGGGAACGGTGTTGAGAGCACGGGTGTCAGCCCCGGGGTGGATAACATGGTCACCAAGACCGTCACCGAACCGGAGTCCNGGGGTATCCAGATCGACGGAAACAAGGCCac > 2:275292/1‑250 (MQ=18) attaCGGGTGAGAATGCCTCATTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCACCGGTAATAACGGGAAAGTGATTCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGAGAGCACCGGTGACATCGCGACGGTGGATAACAAGGGCACCAGGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATa < 2:175896/250‑1 (MQ=18) cGGGTGATAATGCCACAGTAAACAACAATGGAAAAACCACCGTTGACGGTAAAGATTCCACCGGTACTGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGGCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGaa < 2:422269/251‑1 (MQ=255) ggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAgg < 1:360605/251‑1 (MQ=255) aTAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCGGTTGTTAACAACGAAGGCg > 1:121258/1‑249 (MQ=255) acaacaATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAAc < 1:112113/251‑1 (MQ=255) ggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTggcac < 2:505525/251‑1 (MQ=255) atccaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTggcaccggca < 1:141205/249‑1 (MQ=255) gTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGAGATTCAGGTCGGCGATCTGGATGTCAGCGGCGGAGGTCACGGTCTTGATATCAACGGTGACAGCGCGACGGAGGATACAAAGGGCACCCTGACCGGCACCGAACCGGAGTACATGGGTATCCAGGTCGACGGCGACAAGGCCCTCGTCAATAACCAAGGAGAA‑AGCACCATCCACAAAGGCggcaccggacccccga > 2:428218/1‑242 (MQ=17) gACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACTATCACCaatg < 1:47325/229‑3 (MQ=11) gACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACTATCACCaatg > 2:47325/1‑227 (MQ=11) gACGGTAAAGATTCCACCGGTACGGAAATCAACGGCAATAACGGGAAAGAGCTTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGCGACAGCGCAACGGTGGGTAACAAGGGCACCATGACCGTCACCGATCCGGCGTCCATAGGTATCCAGATAGACGGCGGCAAGGCCCTCGTCCATACAGGATGCGAT‑AGCACAAACACCAACGGTggcacggagcaccagagca > 2:385080/1‑236 (MQ=9) ccgccGGGACGTAAATCAACGGTAAGAACGGNAAAGTGATTCAGTACGGCGATCTGGATGACAGCGGCGGCGTTCACGGTAGTGATATCACCGGGGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCGCCGAGCCGGAGTCAATGGGTAACCAGATCGACGGTGACAAGGCGAGCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACTGGCACCCGGAGTGAGGGTGATGACGcg < 2:249860/248‑2 (MQ=255) cGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCCACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCacac > 1:458922/1‑248 (MQ=255) ggAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGCTATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac > 1:464231/1‑250 (MQ=255) aaaTCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCCGGTAGACGACGCCAATGCCATCGTCAAAAACGAGGGCGAC‑ATAACCATCCCCATCGGTGGCAACGGCACCCAGATTAATGGTGATGACGCCACGGCaacaaac > 1:437230/1‑246 (MQ=14) cGGTAATAACTGGAAAGTGATGCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGTATGGAGATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCGCCATGACCGTCACCGTGCCGGAGTCCATGGGTAGCCAGATCGACGGTGACAAGGACATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCa < 2:421301/251‑1 (MQ=18) gTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCGTCGTCAATAACGAAGGCGAG‑AGCGCCATCACCAACGGTGGCAGAGCCGCCCAGATCAATGGTGATGCCCCCACGCCAAACAACA‑CCGGCaa > 1:12116/1‑250 (MQ=17) aataaCGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCCCCGATACGGAGCCCATGGGCATCCAGAACGGCGGTGACAAGGCCGTCGTCAATAACTAAGGCGAA‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAac > 1:195794/1‑251 (MQ=18) aCGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTCGACGGCGACAAGGCCGTCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGAGTAAAGGGGATGACGCCACGGCAAACAACA‑ACGGCAAAaccacc > 2:298653/1‑251 (MQ=14) aCGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAGTGTTGGCACCGGGGACAGCGCGACGGTGGATAACAAGGGCACCATGACCCTCACCTCTCCGGAGTCCATGGGTATCCAGATCGACGGTGACTAGGCCATCGTAAATAATGAAGGCGAG‑AGAACCATCACCAACGGTGGCCGCGGCACCCAGATTAATGGTGCTGAGGCCACGGCAAACAACACACG‑CAAAaccacc > 1:100438/1‑251 (MQ=17) gggAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGGGTCCATGGGTATCCAGGTCGACGGCGACCAGGCCGTTGGCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAAGGGGATGACGCCCCGGCAAAAAACA‑ACGGCAAAACCACCgg > 2:352370/1‑250 (MQ=14) gATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGAcaga > 1:54535/1‑247 (MQ=255) aGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCAACAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGAt > 1:305183/1‑251 (MQ=255) aCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGCTCCGGAGTCCATGGGTATCCAGGTTGACGGCGACAAGGCCGTCGTTAATAACGGAGGCGAG‑AGCCCCATCAACAACGGTGGCACCGGCCACCAGATTAACGGGGCTGACGCCCCGGCCAACAACA‑ACGGCCAAACCACCGTTGACGGCAAGGATTcc > 2:145140/1‑251 (MQ=11) ggCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCa < 2:382060/223‑1 (MQ=255) ggCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCa > 1:382060/1‑223 (MQ=255) gTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAAt > 1:112287/1‑251 (MQ=255) aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCAACGTCGAAAACGAAGGCGAG‑AGAACCCCCACCAACGGTGGAACCGGCACCCCGATTTATGGTTGTGACAACAAGACAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGAATACAACGGAACGGAAATCa > 1:48800/1‑250 (MQ=17) gcggcggcgGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAc > 1:367027/1‑251 (MQ=255) ggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACACGGCCGTCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCCCCGGCACCCAGATTAACGGTGCTGACGCCACGGCAAACAACA‑ACGGCACAACCACCGTTGACGGCAAGGATTCCCCCGGAACGGAAATAAACGGtaata > 2:280704/1‑250 (MQ=17) ggTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACAGCAAAAACACCGTTGACCACAAGAATACCACCGGTACgatactcaccggtaatt > 1:373465/1‑234 (MQ=18) cACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGAACCTCGGACCAGCGTTGTGCAGGTAGACGGTGAAGAGCCCGCTGTTCACAGCATAGGCGAA‑AACACCATCTCCAACGGTGGCACCGGCACCCAGAATAACGGTGATGCAGACACGGCAAACAACA‑ACGGCCAAAACACCGGTGACGGCAAGGATTCCCCCGGTACGGCACTCACCGGTAATAACgg > 2:134534/1‑251 (MQ=2) aCGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGGACGGAAATAAACGGTAATAACgg > 1:365899/1‑250 (MQ=255) aCGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCAGCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGACATCAACGGTAATAACGGa < 2:458922/251‑1 (MQ=255) gTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTAACGACGCCACGGCGAATAACA‑GCGGAAAAACCACCGTTGACGGAAAAGATTCCACGGGTACGGAAATCGACGGTAATATCggcatt > 1:332839/1‑247 (MQ=14) gATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGCGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTAt > 1:386487/1‑251 (MQ=255) gATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCGACGGTAATAACGGAACAGTTAt > 1:372542/1‑251 (MQ=255) ggTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACAGGTACGGAAATCAACGGCAATAACGGAAAAGATATTCAGGACgg > 1:317136/1‑251 (MQ=255) tGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCGCCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACC‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGAAAGGTTATTCCGGACGGCg > 2:461683/1‑251 (MQ=255) cAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGcc > 1:41200/1‑154 (MQ=255) cAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGcc < 2:41200/154‑1 (MQ=255) cAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGACTAATGTGGATGACGCCCCGGCAAACAACA‑ACGGCAACACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATc > 1:50701/1‑251 (MQ=255) aGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACgg < 1:165899/188‑1 (MQ=255) aGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACgg > 2:165899/1‑188 (MQ=255) aGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACAAACCGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCTAACGGTAAGGAAATCAACAGGAATAACGGAAAGGTTGATCAGGACGGCGATCt > 1:424802/1‑251 (MQ=18) gcgcGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGGGGCACCGGCTGCCAGATGAACGGTGATGAGGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTg < 1:239121/251‑1 (MQ=255) cgcgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCCCGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCCAGGATTCCACCGGCACGGAAATCACCGGCAATAACGGGAAGGTGATTCAGGACGGCGAGCTgg > 2:80852/1‑251 (MQ=14) gACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCGACCAGGCCATCGTCAGGAACGGCGGCGCGTAG‑GGCATCAGCGAAGGTGTCAGTGGCAGCCGGATTAATGGTGAAGACGACACGGCAAACAACA‑AGGGCAAAACCACCGTTGACGGCAAGGACTCCACCGGAACGGAAATAAAAGGTAATAACGGGAAGGTGATTGCGGACGGAGATCGGGATg > 2:416219/1‑251 (MQ=9) gTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGAACGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAg < 1:275292/251‑1 (MQ=255) tAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAGGTGATTCAGGACAGCgcggtggatcacaggtgtg > 1:52276/1‑233 (MQ=18) cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGt > 1:331537/1‑165 (MQ=255) cAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGt < 2:331537/165‑1 (MQ=255) gCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCAc > 1:528972/1‑251 (MQ=255) aTGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCGATCGTCAATAACGAAGGCGAG‑AGCACCATCTCCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTAt < 1:237354/251‑1 (MQ=255) gACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACACAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCGACGGCAATAACGGCATAGTAATTCAGGACGGCAGCCTGGATGTCAGCGGCGGCGGGCACGGTGTTg > 1:204057/1‑251 (MQ=17) aCCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGACGGATCCGCAGAAAACAACA‑ACGACAAAACCACAGCGGTGGGCACGGAATGCCGCGGTACGCATGTCAACGGAAATAACGGACAAGAGATTCCGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTg > 1:206769/1‑250 (MQ=16) cACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGATCAAGGTATTGATATc > 1:446769/1‑250 (MQ=255) ggAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGCCGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTc > 2:134572/1‑214 (MQ=255) ggAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTc < 1:134572/214‑1 (MQ=255) aGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAgc > 1:372832/1‑251 (MQ=255) tCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGCGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAgcgc > 1:363541/1‑251 (MQ=255) ggTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGAACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACggg > 1:46611/1‑250 (MQ=255) aaagaccGACGGTGAGAAGGCCATCGTCAATAACGAAGGCGAG‑AACACGAACAACAACGGTGGCACCGGGACCCAGATTACGGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATa < 1:3237/245‑1 (MQ=18) aTCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGAATTGATATCACCGGCGACAGCGCACAGGTGGATAACa > 1:484671/1‑250 (MQ=255) cGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCCACGGTGGATAACAAgg > 1:219828/1‑251 (MQ=255) | CACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAG‑AGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACA‑ACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGG > NC_000913/1466028‑1466520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |