mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 38 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,228,278 | 0 | G | C | 43.8% | 34.3 / 11.7 | 32 | intergenic (‑1008/‑704) | yohF/yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| * | NC_000913 | 811,721 | 0 | T | G | 43.4% | 83.7 / 16.0 | 83 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 4,256,069 | 0 | G | C | 34.0% | 92.3 / 15.9 | 50 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 1,101,673 | 0 | T | A | 34.0% | 95.3 / 14.8 | 53 | L4F (TTA→TTT) | csgG | curli secretion channel |
| * | NC_000913 | 2,326,450 | 0 | T | G | 33.8% | 115.2 / 18.0 | 77 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,839,359 | 0 | T | G | 32.4% | 127.8 / 12.4 | 72 | intergenic (‑95/‑165) | ascG/ascF | DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component |
| * | NC_000913 | 1,101,676 | 0 | G | A | 29.6% | 91.2 / 13.3 | 55 | R3R (CGC→CGT) | csgG | curli secretion channel |
| * | NC_000913 | 2,962,495 | 0 | T | G | 29.5% | 137.0 / 10.1 | 95 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdC |
| * | NC_000913 | 4,171,557 | 0 | C | G | 29.4% | 72.2 / 53.0 | 52 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 4,201,278 | 0 | A | C | 28.9% | 143.2 / 10.3 | 84 | G137G (GGT→GGG) | zraP | signaling pathway modulator ZraP |
| * | NC_000913 | 463,246 | 0 | T | G | 28.3% | 159.7 / 11.1 | 93 | G444G (GGT→GGG) | ppiD | periplasmic folding chaperone |
| * | NC_000913 | 1,579,757 | 0 | C | A | 28.2% | 52.9 / 11.8 | 39 | C345F (TGC→TTC) | ydeM | putative anaerobic sulfatase maturation enzyme YdeM |
| * | NC_000913 | 4,296,268 | 0 | T | C | 27.6% | 40.4 / 17.4 | 29 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,788,025 | 0 | T | G | 27.5% | 195.3 / 11.2 | 103 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NC_000913 | 949,118 | 0 | C | T | 27.3% | 108.9 / 18.2 | 66 | E151K (GAA→AAA) | ycaN | putative DNA‑binding transcriptional regulator YcaN |
| * | NC_000913 | 2,336,594 | 0 | A | C | 27.0% | 138.0 / 11.6 | 75 | G17G (GGT→GGG) | yfaA | DUF2138 domain‑containing protein YfaA |
| * | NC_000913 | 647,210 | 0 | A | C | 26.8% | 180.9 / 11.1 | 100 | G100G (GGT→GGG) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 4,213,765 | 0 | A | C | 26.8% | 132.3 / 13.7 | 71 | V120G (GTG→GGG) | yjaB | peptidyl‑lysine N‑acetyltransferase YjaB |
| * | NC_000913 | 937,942 | 0 | A | C | 26.3% | 147.1 / 10.9 | 76 | T191P (ACC→CCC) | lolA | outer membrane lipoprotein carrier protein |
| * | NC_000913 | 1,876,015 | 0 | A | G | 26.2% | 179.6 / 12.8 | 83 | I115V (ATT→GTT) | nimT | 2‑nitroimidazole exporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 993094 = | 97 (1.080) | 3 (0.030) | 3/480 | 6.6 | 3.4% | coding (2473/2613 nt) | pepN | aminopeptidase N |
| ? | NC_000913 | 1726646 = | 77 (0.880) | intergenic (+24/‑13) | nemR/nemA | DNA‑binding transcriptional repressor NemR/N‑ethylmaleimide reductase | |||||
| * | ? | NC_000913 | 2929131 = | 138 (1.540) | 3 (0.030) | 3/492 | 6.7 | 2.6% | coding (903/1290 nt) | sdaC | L‑serine:H(+) symporter SdaC |
| ? | NC_000913 | = 3511404 | 85 (0.950) | coding (19/363 nt) | yhfY | PRD domain‑containing protein YhfY | |||||