Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 937,942 | 0 | A | C | 26.3% | 147.1 / 10.9 | 76 | T191P (ACC→CCC) | lolA | outer membrane lipoprotein carrier protein |
Reads supporting (aligned to +/- strand): ref base A (31/25); new base C (0/20); total (31/45) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.10e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ACGCCGTTTATGCTGATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGC > NC_000913/937696‑938179 | aCGCCGTTTATGCTGATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCAcccc > 1:451812/1‑251 (MQ=255) ccGTTTATGCTGATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCccgcc > 1:422268/1‑251 (MQ=255) cGTTTATGCTGATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCccgccg < 1:439668/251‑1 (MQ=255) gATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTc > 1:498473/1‑250 (MQ=255) atggCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGAGGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCAc < 1:201069/248‑1 (MQ=255) cccagaaCCAGTCCAGCGCGTGGCACCAGGAAAAAATCAAACAAAAGGGGGATGTCTTTGGCCTG‑ACGCCTAAAGCCAACAAGGGCAATCTGAAGCAGTTCACCATTAGCCTGGGACGAGAGGGCTCAATCCATCA‑GGTTTGCGCGGGGGA‑CAGGGACGATCAGCGCAGCAGTTTACACTTAAAACCCCAGCAAAATGGGGCGT‑TGGATGCAG‑CAAAATTACCC‑TTCACCCCGCCGCAAGGCGTCACGGTa < 1:44545/246‑1 (MQ=255) cccGCAACCAGGCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGCCTTTGTCCTG‑ACGCCGAAGGCCAGCAAGGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGGGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGAACAGCGCAGCAGTTATCAACTGAAAGCCCAGCAAAATGGGGCTG‑GGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGTCGGCACGGTa < 1:534722/251‑1 (MQ=255) cGCACCCAGTCCAGCGCCTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCGG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTTATGGCACAACCCATCG‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGTTG‑TGGATGCAG‑CGAAATTTACC‑TTCCCCCCTCCGCAAGGCGTCACGGTAga < 1:610946/251‑1 (MQ=255) cAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTACCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGAGGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAgatg < 1:270390/251‑1 (MQ=255) ccggctaCTGGCGGCAGTACAATATCAAACAGAAGGGGGTTGACTTTGTCCTG‑ACGCGGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGAGGGCACAATCCCTCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTAGCAACTGAAACCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGt < 2:98811/245‑1 (MQ=255) cgcacggCAGCAGAAAAAAATCAAACAGAATGGCGATGTCTTTGTCCTG‑ACGCCGAAAGCCAGCAAGGGCAATCGGAAGCAGTTCCCCATTAACGTGGGACGTGATGGCACAATCCATCG‑TTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGAAG‑CGAAATTTCCC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGt < 2:486214/246‑1 (MQ=255) cGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATAAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAgg > 2:616738/1‑250 (MQ=255) tGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTag > 1:50434/1‑249 (MQ=255) tGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGAGGATCAACGTACGTag > 2:493750/1‑249 (MQ=255) ggCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTaga < 1:180484/249‑1 (MQ=255) aaaTATCAAACAGAATGGCGATGCCTTTGCCCTG‑CCGCCGAAAGCCAGCAATGGAAATCTGAAGCAGTTCCCCATTAACGTGGGACGGGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACGGAATTCCCAGCAAAATGGGGCTG‑TGGAGTCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGTCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtg < 2:719771/250‑1 (MQ=255) atatCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtg > 2:33462/1‑249 (MQ=255) atatCAAACAGAATGGCGATGACTTTGTCCGG‑ACGCCGAAAGCCAGCAAGGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCACCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATAAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCtgagtgag < 1:176580/251‑1 (MQ=255) tCAAACAGAATGGCGACGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGNTCAACGTAAGTAGAGGCACCTGAGCGAGCa > 2:325869/1‑250 (MQ=255) aaaaaaGAAGGGCGATGATTTTGCCCTG‑CCGCCAAAAGCCAGCAATGGCAATCTGAAGCTGTTCACCATTAACGTGGGACGTGATGGCACAATCCAGCA‑TTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTACCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑GTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAAt < 2:598208/246‑1 (MQ=255) cagatgggCGATGATGTTGTCCTG‑ACGCCGAAAGCAGGCAAGGATAATCTGAAGATGTTCACCATTAACGTGGGACGTGATGGCACAATCAATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGAAGTTATCAACTGAAAGCCCGGAAAAATGGGGCTG‑TGGATGCAG‑CAAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGt < 2:519997/245‑1 (MQ=255) aGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGCTGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTc > 2:195678/1‑251 (MQ=255) aGAAGGGCGATGACTTTGTCCTGCAC‑CCGAAAGCCAGCAATGGCAATCTGAAGAAGTTCCCCATTAACGGGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGAACAGCGCAGCAGTTATCACCTGAAACCCCAGCAAAAGGGGGTTG‑TGGAGGAAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTc < 2:91536/251‑1 (MQ=255) agggcgaagccttggTCCTG‑ACGCCGAAAGCCAGCAAGGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGAGGGCACAACCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACTATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGGTGCAG‑CGAAATTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCt < 2:457768/237‑1 (MQ=255) aTGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTACCGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCt < 1:77273/251‑1 (MQ=255) atggagggtgttgtgtccggccGCCAAAAGCCGGAAAGGGCTATCTGAAGCAGTTCACAATTAACGTGGGTCGTGATGGCCCATTCTAGCT‑GTTTAGCGCGGGGGAGCAGG‑ACGACCAGCGCAGCATTTATCACCTGAAACCCCAGCAAAATGTGGCTG‑TGGAGGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGAGGATCATCGTAAGTAGAGGCGCCTGAGTGAGCGATCTGTCGCt < 2:698525/230‑1 (MQ=255) ggCGATGCCTTTTTCCTG‑CCGTCGAAGGCCAGCAAGGGCAATCTGAGGAAGTTAACAATTACCGTGGTACGTGATGGCACAATCC‑TCAAGTTTAGCGCGGGGGGGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAACCCCATCAAAATGGGGTTG‑GGGATGCAG‑CGAAATTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTc < 2:671666/250‑1 (MQ=255) ttgcccTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCCCCATTAACGGGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CAAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCgg < 1:429693/246‑1 (MQ=255) cTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTTAGTGAGCAATCTGTCGCTCGCTTTTTCGGataat > 2:463853/1‑250 (MQ=255) tG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATAc > 1:377080/1‑251 (MQ=255) cGCCGAAAGCCAGCAAGGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAACCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAACCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACttt < 2:422268/251‑1 (MQ=255) aaTGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCcg < 1:63155/251‑1 (MQ=255) ggCAATCTGAAGCAGTTCACCATTACCGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCcgcg < 1:717015/250‑1 (MQ=255) gAAGCAGTTCACCATTAACGGGGGAGGGGAGGGAACAATCAATCG‑GTGTGGCGCGGTGGAGCAGG‑ACGATCAGCGAAGCAGTTAACAACTGAATGCCCAGCAAAATGGGGCTG‑GGGAGGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTGTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCgg < 2:38404/251‑1 (MQ=255) aGCAGTTCACCATTAACGTGGGACGTGATGGCACAACCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAACCCCACAAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGcc < 2:377080/251‑1 (MQ=255) cAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGcc > 2:717755/1‑249 (MQ=255) cAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGGGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAg < 1:199095/251‑1 (MQ=255) gTTCACCATTCACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGTTCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCACCCCGCCGCAAGGCGTCAAGGTAGATGATCAACGTATGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTTCCCGCGCGTAGGCGGCCAGa > 2:556390/1‑250 (MQ=255) aTTAATGTGGGCAGTGATGGCACAATCCATCA‑GTTTAGCGCGGCAGAGCAGG‑ACGCTCAGCGCAGCACTTATCAACTGAAATCCCAGCCAAATGGGGCTG‑TGGATGCAG‑AGAAATTTACC‑TTCACACCGCCGCAAGGCGTCACGGTAGATGATCACCGTAAGTCGCTGCACCTGAATGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTTGCCGCGCGTATTCGGCCAGAACAttt > 2:415767/1‑249 (MQ=255) tAACGTGGGACGGGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGc < 1:388097/250‑1 (MQ=255) actagatggctaaaTCCATCG‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGGTTTCAACTGAAATCCCAGAAAAAGGGGGCTG‑TGTATGCTG‑CGAATTTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTTAGCAATCTGTCGCTCGATTTTTCGTATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATc < 1:606806/239‑1 (MQ=255) gTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGACACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCgg > 2:285039/1‑251 (MQ=255) aTGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGcc > 1:214647/1‑250 (MQ=255) cataccATCA‑GTTGAGCGCGGGGGAGCAGG‑ACAATCAGCGCAGCATTTATCAACTGAAATCCCAGAAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACa < 2:475648/247‑1 (MQ=255) cacatcgttttggcgcGTTGGAGCGGG‑ACGCTCAGCTCAGATGGTATCAACTAAAATCACAGCAAAATGGGGTTG‑TGGTTTCAG‑CGAAGTTTACC‑GCCCCCCCGCCGCAAGGCGGCACGGTAGATGATCAACGTAAGTAGAGGCACCTGATGGAGCAATCTGTCGCTCGATTTTTCGGATAACTTTTTTCATCCTCTGTCCGCGCGTATGCGGCTAGAAAATTTAGCACAGTATATCGGCCAGCAACAttt < 2:282681/239‑1 (MQ=255) aTCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCCCAGTATATCGGCCAGCAACATTTgct > 2:151454/1‑251 (MQ=255) cA‑GTTTAGCGCGGTGGAGCAGT‑ACGAACAGCGCAGCAGGTATCAACTGAAACCCCAGCAAAATGGGGCTG‑GGGATGCAG‑CGAAATTTGCC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTgctg < 1:548397/250‑1 (MQ=255) cA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCACAATGGGGCTG‑TGGATGCAG‑CGAAACTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTNGCACAGTATATCGGCCAGCAACATTTgctgg > 2:349999/1‑251 (MQ=255) cA‑GTTTAGCGCGGGGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACA‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGACGCTCGCTTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTgcggg > 2:587606/1‑248 (MQ=255) tttAGGGCGGGGGAGCAGG‑ACGATCAGCGCAGCAGTTACCAACTGAAATCCCAGCAAAGTGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTgctggct < 1:325869/250‑1 (MQ=255) tAGCGCGGGGGCGGAGG‑ACGATCAGAGGAGCATTGAGCAACAGAAATCCCATCAAAAGGGGGCTG‑GGGAGGCAG‑CGAAATTTACC‑TTCCCACCGCCGCAAGGCGTCACGGGAGATGATCAACGTAAGTAGAGTCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCGCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGTCTGc < 2:387001/250‑1 (MQ=255) gTGGAGCAGG‑ACGCTCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGCCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCAGGCCGCGGGGAAGc > 2:513794/1‑251 (MQ=255) gggAGCGGG‑ACGATCAGCGCAGCAGTTATCAACTAAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TCCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGcc < 1:409512/250‑1 (MQ=255) gggAGCAGG‑ATGATCGGCGCAGCGTTTAACAACTGAAACCCCAGCAAAAGGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TCCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGcc < 2:451812/250‑1 (MQ=255) gaGG‑ACGATCGGCGCAGCAGTTATCAACTGAAACCCCAGAAAAAGGGGGCTG‑TGGATGAAG‑GGAATTTTCCC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGc < 1:195678/250‑1 (MQ=255) aCGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCcgcg > 1:366744/1‑251 (MQ=255) tCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCt > 1:284682/1‑251 (MQ=255) gcgcAGCAGTTATCAACTGAAATCCCAGCAAAAGGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATc < 1:529822/251‑1 (MQ=255) cgcAGCAGTTATCACCTGAAATCCCAGCAAAATGGGCCTG‑TGGAGGCAG‑CGAAATTTACC‑TTCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCg < 1:415813/251‑1 (MQ=255) cgcAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACA‑TTCACCACGCCCCAAGGCGTCACCGAAGATGTTCAACGTAAGTAGAGGCACCTGCGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGACGCCGTTGCCGCGCGCTATCg > 1:308453/1‑251 (MQ=255) gcagcaGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCg > 2:100115/1‑250 (MQ=255) gcagTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGAAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGc > 2:219927/1‑251 (MQ=255) cagTTATCACCTAAAACCCCAGCAAAA‑GGGGNTGGTGGATGCAG‑CGAAATTTACC‑TCCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGcc < 2:366744/251‑1 (MQ=255) cAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCAtt > 1:450306/1‑251 (MQ=255) aaCTGAAACCCCAGCAAAATGGGGCTG‑TCGGTGCGG‑CTAAATTTCCC‑TCCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCCCCTGAGTGAGCAATCTGTCGCTCGATTTTGCGGATAATACGGTTCAACCGCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACATTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCTAAGCCGGTCAttt < 2:132170/251‑1 (MQ=255) aCTGAAAGCCAAGCAAAGGGGGGCTG‑GGGAGGCAG‑AGAAATTTCCC‑GTCACCCCGCCGGTAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTGCGACCGCTGGCCGCGGGTATGCGGCCAGAAAATTTAGGACAGTATATCGGCCTGCAGCATTTGCTGGATGCGGGGAAGCCGTTGCTGCGCGCTATCGAAGCCGGGCATTTa < 2:647265/251‑1 (MQ=255) aaTCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTc > 1:658497/1‑251 (MQ=255) ccaaGCAAAATGGGCTTG‑TGGATG‑AGACGAATTTTCCC‑TTCCCCCCGCCGCATGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTAt < 2:253012/248‑1 (MQ=255) ccaaaaggggtctgggggtgaagctaaaTTTCCC‑TCCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCCCCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTGTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATc < 1:597602/226‑1 (MQ=255) aaaaGGGGGCTG‑TGGGTG‑AA‑CGAAATTTCCCCTCCCCCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATGTACATTCTATGATCct < 2:448648/251‑1 (MQ=255) aaTGGGGCTG‑TGGATGCAG‑CGAAATTTCCC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCctct < 1:489237/251‑1 (MQ=255) aTGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGCTGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGCTTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACCTTCTATGCTCCTCTg > 2:231708/1‑251 (MQ=255) ggCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTATCTGATCCTCTggggg > 2:650496/1‑251 (MQ=255) aG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTAcc < 1:245232/251‑1 (MQ=255) cGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCgg > 1:483713/1‑251 (MQ=255) gAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCAAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGACGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGc > 2:586222/1‑251 (MQ=255) | ACGCCGTTTATGCTGATTGCCCGCAACCAGTCCAGCGACTGGCAGCAGTACAATATCAAACAGAATGGCGATGACTTTGTCCTG‑ACGCCGAAAGCCAGCAATGGCAATCTGAAGCAGTTCACCATTAACGTGGGACGTGATGGCACAATCCATCA‑GTTTAGCGCGGTGGAGCAGG‑ACGATCAGCGCAGCAGTTATCAACTGAAATCCCAGCAAAATGGGGCTG‑TGGATGCAG‑CGAAATTTACC‑TTCACCCCGCCGCAAGGCGTCACGGTAGATGATCAACGTAAGTAGAGGCACCTGAGTGAGCAATCTGTCGCTCGATTTTTCGGATAATACTTTTCAACCTCTGGCCGCGCGTATGCGGCCAGAAAATTTAGCACAGTATATCGGCCAGCAACATTTGCTGGCTGCGGGGAAGCCGTTGCCGCGCGCTATCGAAGCCGGGCATTTACATTCTATGATCCTCTGGGGGCCGCCGGGTACCGGC > NC_000913/937696‑938179 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |