mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 46.9% | ‑1.2 / 41.3 | 32 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,261,055 | 0 | A | C | 34.8% | 142.5 / 13.9 | 92 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| * | NC_000913 | 2,296,764 | 0 | T | G | 32.0% | 125.3 / 17.3 | 79 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 827,507 | 0 | T | G | 29.3% | 81.4 / 16.6 | 60 | D492A (GAC→GCC) | ybhF | ABC exporter ATP binding subunit YbhF |
| * | NC_000913 | 4,223,597 | 0 | C | T | 24.5% | 111.5 / 11.2 | 53 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 119,396 | 0 | C | T | 24.1% | 138.1 / 21.2 | 80 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 3,133,369 | 0 | C | T | 24.0% | 111.5 / 15.0 | 50 | E197K (GAA→AAA) | yghS | putative ATP‑binding protein YghS |
| * | NC_000913 | 4,256,061 | 0 | C | T | 22.4% | 98.9 / 14.3 | 58 | E136K (GAA→AAA) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 3,342,101 | 0 | C | G | 21.0% | 129.2 / 12.5 | 62 | P279R (CCG→CGG) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| * | NC_000913 | 4,457,105 | 0 | A | G | 20.8% | 168.6 / 10.0 | 77 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4008630 = | 58 (1.010) | 7 (0.130) | 7/466 | 2.3 | 11.0% | coding (430/621 nt) | rhtB | L‑homoserine/L‑homoserine lactone/L‑threonine exporter |
| ? | NC_000913 | = 4008638 | 57 (1.030) | coding (422/621 nt) | rhtB | L‑homoserine/L‑homoserine lactone/L‑threonine exporter | |||||
| * | ? | NC_000913 | = 1423890 | 12 (0.210) | 4 (0.070) | 4/478 | 2.9 | 8.5% | coding (109/1458 nt) | trkG | K(+) transporter TrkG |
| ? | NC_000913 | = 4356677 | 74 (1.300) | coding (1941/2148 nt) | cadA | lysine decarboxylase 1 | |||||
| * | ? | NC_000913 | = 1634457 | NA (NA) | 3 (0.050) | 3/482 | 3.2 | 7.9% | coding (429/576 nt) | tfaQ | putative tail fiber assembly protein TfaQ |
| ? | NC_000913 | 4536248 = | 35 (0.610) | intergenic (‑2195/‑349) | topAI/ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB | |||||
| * | ? | NC_000913 | 1452725 = | 68 (1.180) | 3 (0.050) | 3/476 | 3.2 | 4.0% | coding (918/2046 nt) | paaZ | fused 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase and oxepin‑CoA hydrolase |
| ? | NC_000913 | 4156091 = | 77 (1.360) | coding (79/777 nt) | argB | acetylglutamate kinase | |||||