New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1634457 | NA (NA) | 3 (0.050) | 3/482 | 3.2 | 7.9% | coding (429/576 nt) | tfaQ | putative tail fiber assembly protein TfaQ |
? | NC_000913 | 4536248 = | 35 (0.610) | intergenic (‑2195/‑349) | topAI/ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
AATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTATTATAT > NC_000913/4535998‑4536497 | aaTATATGGTAGGCTGGATCAACGTCAGCTTTAAATGGGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCGTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAAGGGCCTAATTTCTTTGa < 2:575939/251‑1 (MQ=255) gTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACCTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑g < 1:410231/251‑1 (MQ=255) ggATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCat < 1:196832/250‑1 (MQ=255) aGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCAtt < 1:540832/233‑1 (MQ=255) cATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACtt < 1:209183/251‑1 (MQ=255) gATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTtata < 1:247263/251‑1 (MQ=255) aaTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGtgctg < 1:54687/251‑1 (MQ=255) ggCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAAGCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCt < 2:539949/251‑1 (MQ=255) tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGccc < 2:134233/250‑1 (MQ=255) tCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGccc < 1:332302/250‑1 (MQ=255) aTTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTTTGGATGAAAAAAAAAGCAAGCAATAATATAAAAATAGCCTAATTTTTTTTAACCACATTAA‑ACATATCATCATCGTCTATTTTTCCGAAACCGTCGACTTATAATTGCCACAACGGCCTATCAGGAAGGGGCTGCGACCGCAGTGGCCCAAAACATTc > 1:55578/1‑251 (MQ=255) tGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTcc < 1:23920/250‑1 (MQ=255) gCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCa < 2:96904/250‑1 (MQ=255) aGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAAGCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCGGTGGCCCAAAACGGTCCAGTaa < 2:189079/251‑1 (MQ=255) gCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGGGCTTTTTGGAATGAAAAAAAAAACAAACAAAAAAATAAAAAATGCCTAATTTTTTTGAAAATCATTAA‑ACATATTATTATCGTCTTTTTTTCAGAATCCGTCGGCTTATAATCGCCCGCACAGGATATCAGGACGGGGCTGCGGACGCTGTGGCCCcaaaaactcccataaactg > 1:323005/1‑236 (MQ=255) ccTTTCCTGATTATAAATCTTATTGTTTACCAAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACtgt < 2:442572/251‑1 (MQ=255) ataAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCGGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑Cg < 1:220573/250‑1 (MQ=255) tAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGAGGATGGTATTTGGAATGAAAAAAAATACCAGAAATAATATAATAAATGACTAATTTTTTTGTAAATCATTAA‑ACATATCATAATCCACTATTTGACACAAACCGTCGCCTTTTAATCGCCAACAAGGCAAATTATGAGGGTGCTGCGCACGGTGTTGCACCAAACGATCCAGTAAAATGGGTAGA‑GTTGCGTAGAGTTcctagacctaac > 1:531777/1‑240 (MQ=255) aaTCTTTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAAt < 2:323005/249‑1 (MQ=255) ttttCCTTTGCATAATGCGCCTGGGATAAATGGCGGGTGCTTTTAGGAATAAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCTTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGaaaa < 1:407678/250‑1 (MQ=255) aTAATGCGCCTGGTATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCTTCTATTTGCCAGAATCCTTCGTCTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAACCTGTGTAGATGTT‑CGTATATTTCCGAGCCATAATCGAAAAGGCGCGGATGTc < 1:572791/251‑1 (MQ=255) gTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGACTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGt > 1:76274/1‑250 (MQ=255) aaTGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCgg > 1:400352/1‑230 (MQ=255) aaTGAAAAAAAATGCAAGCAAAAATATAATAATGGCCTAATTTCTTTAAACATCATTAA‑GCATATCATCATCGCTTATTTGCCAAAATCCGTCGACTTATAATCGCAAGAACGGCATATCAGGACGGTGCTGCAAACGTTGTGGCCAAAAACTTTCCAGAAAACTGTGTAGATGTT‑TGTATATTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCgg < 2:400352/230‑1 (MQ=255) gaaagacaATGCAAGCAATAATATAATAATGCCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGCACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTCAGCAATAACAACgg > 2:539879/1‑251 (MQ=255) aaaaaggaaagaaaaaatataattAGGGCTTAATTTCTTTAAACAT‑ATTAAAGCATTTCATCATCGTCTATTGGCCAGAATCCGTCGTCTTATAATCGCCAGAACGGCATATCAGGGCGGTGCTGCGAACGCTGGGGCCCAAAACGTTCCAGTAAGCGGTGTAGATGTT‑CGTAGGTTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTa < 2:55578/236‑1 (MQ=255) caagcaaTAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTTTTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTg > 1:24194/1‑251 (MQ=255) aataaaataaTGGCTTAATTTCTTTAACCATCATGAA‑GCATATCTTCATCGTTTATTTGCAAGATCCCGTCTACTACTAAGCGTCAGAAGGGCATACCGGGACTGTTCTGGTAACTCGTTGCCCCTAAACTTTCCAGTAAACGTTATGGATGTT‑CTTATAGTCCCGAGCCATATTCGAAAAGGCGCGGATGTCTATTAAGTCATCCGGCTAATCTTTAAGCAATAACAACGGTTTATGCGGTGCGCGtttt < 1:2298/251‑1 (MQ=255) ataataATGGCCTAATTGCTTTGAACATCATTAA‑GACTATCATCATCGTCTATTTACCAGAATCCGTCGACTTATAATCGCCAGAACGGAATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATAGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTACTCTGTAAGCAATAATAACGGTTTATGCGGTGCGCGTTTTTc > 2:340273/1‑250 (MQ=255) aataatGGCCTAATTTATTTGAACATCATTAA‑GCATATCATCATCGTCTATTTACCAGAATCCGTCGCCTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTCGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATATGTAAGCCATAACCACGGTTTATGCTGTGCGCGTTTTTCAcc > 2:490790/1‑251 (MQ=255) aatGGCCTAATTTCTTTGAACATCATTAA‑CCATACCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATACCAGGACGGTTCTGCGAACGCTGTGGCCCAAACCTTCCCAGTAAACTGTGTAGATGTT‑CGTAGATTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCt < 1:283390/250‑1 (MQ=255) atGGCATAATTTCTGTGAACATCATAAA‑GCATATCATCAGCTTTTATTTGCCAGAATCCGTCGACGTATAACCGCCAGAACGGCATATCAGGACGGGGCTGCGAACGTTGTGGCCAAAACCGTCCCAGTAAGCTGTGTAGATGTT‑GGTAGATTCCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAAGCTGTAAGCAATAACAACGGTTTATGCGGTGCTCGTTTTTCACCCTtg < 2:377583/251‑1 (MQ=255) aaTTTCTTTGAACCTCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTCTAATCGCCAGAACGGCATATCAGGCCGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGcc > 2:570778/1‑248 (MQ=255) aTTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGcc > 2:135836/1‑247 (MQ=255) ttCTTTGAACATCATAAA‑GCATAACATCATCGTCTATTTGCCAGAACCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGatt < 1:367320/250‑1 (MQ=255) aaaCATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTATTatat < 1:135836/250‑1 (MQ=255) | AATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA‑GCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTT‑CGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAGCAATAACAACGGTTTATGCGGTGCGCGTTTTTCACCCTTGTGCCAGATTATTATAT > NC_000913/4535998‑4536497 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |