mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,121,432 | 0 | T | G | 52.9% | 9.8 / 18.1 | 17 | D19A (GAC→GCC) | dinI | DNA damage‑inducible protein I |
| * | NC_000913 | 3,218,847 | 0 | T | C | 50.0% | 2.7 / 43.6 | 37 | E77G (GAG→GGG) | aer | aerotaxis receptor |
| * | NC_000913 | 4,386,215 | 0 | A | G | 48.6% | ‑4.0 / 44.7 | 35 | R1052R (CGT→CGC) | mscM | miniconductance mechanosensitive channel MscM |
| * | NC_000913 | 2,434,882 | 0 | T | G | 44.0% | 14.2 / 10.9 | 25 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 4,027,233 | 0 | T | A | 41.4% | 21.9 / 12.7 | 29 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 4,299,250 | 0 | A | G | 41.4% | 18.3 / 25.3 | 31 | G39G (GGT→GGC) | fdhF | formate dehydrogenase H |
| * | NC_000913 | 862,559 | 0 | G | T | 39.4% | 31.2 / 13.2 | 33 | H16Q (CAC→CAA) | ybiW | putative pyruvate formate lyase |
| * | NC_000913 | 2,780,239 | 0 | T | C | 39.1% | 35.6 / 39.0 | 46 | T830A (ACA→GCA) | ypjA | adhesin‑like autotransporter YpjA |
| * | NC_000913 | 891,031 | 0 | C | T | 38.5% | 22.6 / 10.5 | 26 | S40F (TCT→TTT) | ybjC | DUF1418 domain‑containing protein YbjC |
| * | NC_000913 | 1,014,019 | 0 | A | G | 38.3% | 60.3 / 16.4 | 48 | E254G (GAA→GGA) | pqiB | intermembrane transport protein PqiB |
| * | NC_000913 | 1,014,023 | 0 | T | G | 38.3% | 59.0 / 12.0 | 49 | G255G (GGT→GGG) | pqiB | intermembrane transport protein PqiB |
| * | NC_000913 | 2,943,911 | 0 | T | C | 38.1% | 13.8 / 15.7 | 23 | V192A (GTG→GCG) | csdA | cysteine sulfinate desulfinase |
| * | NC_000913 | 3,660,610 | 0 | A | G | 36.5% | 40.9 / 51.4 | 53 | E66G (GAG→GGG) | mdtF | multidrug efflux pump RND permease MdtF |
| * | NC_000913 | 4,628,631 | 0 | T | A | 35.3% | 52.6 / 14.2 | 34 | intergenic (+84/+224) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| * | NC_000913 | 1,466,201 | 0 | T | C | 32.6% | 53.4 / 24.0 | 45 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 1,029,739 | 0 | A | . | 32.3% | 68.1 / 33.2 | 32 | coding (231/1191 nt) | rlmI | 23S rRNA m(5)C1962 methyltransferase |
| * | NC_000913 | 4,606,216 | 0 | A | G | 32.1% | 23.7 / 17.8 | 29 | noncoding (71/87 nt) | leuP | tRNA‑Leu |
| * | NC_000913 | 1,100,357 | 0 | T | C | 31.8% | 49.2 / 32.6 | 45 | V21A (GTG→GCG) | ycdZ | inner membrane protein YcdZ |
| * | NC_000913 | 1,014,028 | 0 | A | G | 31.1% | 66.6 / 11.2 | 48 | D257G (GAT→GGT) | pqiB | intermembrane transport protein PqiB |
| * | NC_000913 | 2,140,911 | 0 | T | C | 30.8% | 29.0 / 15.6 | 26 | K234K (AAA→AAG) | asmA | putative assembly protein AsmA |