| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,628,631 | 0 | T | A | 35.3% | 52.6 / 14.2 | 34 | intergenic (+84/+224) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| Reads supporting (aligned to +/- strand): ref base T (19/3); new base A (0/12); total (19/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.30e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTT > NC_000913/4628402‑4628878 | tGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAACCAAGGTTTGAAAAAACC‑t > 2:91999/1‑251 (MQ=255) cAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACggg > 2:99474/1‑251 (MQ=255) aaaGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGt > 1:76961/1‑251 (MQ=255) agTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGAcc < 2:366535/251‑1 (MQ=255) gTTCCAGAACTTGCTGGGGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGAGAccc > 2:50299/1‑251 (MQ=255) aGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCAc > 1:282855/1‑251 (MQ=255) gCTGGGGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACGGGTGCGGGAGATGAGGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGATTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTg < 1:181810/251‑1 (MQ=255) ggggAGATGCTAGAAGAGAACAATCTCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAgg > 2:25959/3‑250 (MQ=255) gattttgggggggTTAAAGAGGAAGATTACGAAAGTGGTTTCCGGCGCTGCGTGGAACTGGTGCGGGGGTTAATGGGGGAG‑AAAGAATAACG‑GTGATGAAACTGCTAAAAGGCGAGGTAAAAAATGAGTTTTTTTGA‑TGAGTTGAAAC‑‑CC‑TCTGTGGAAGAGGCGGTCGAGATTAAACAAGGTTTAAAAAAACC‑TGCCGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACg < 1:247582/241‑1 (MQ=255) gAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACg > 2:155217/1‑251 (MQ=255) aTTTGTGCGGGTGGAAGAGGAAGATGACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTAAAAC‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATAAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGgt < 1:155217/251‑1 (MQ=255) tttGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGgtg > 2:117521/1‑251 (MQ=255) gggggggTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACGGGTGGGGGAGATGAGGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTAAAGGGCGAGGTAAAAAATGAGTTTTTTTGA‑TGAGTTAAAAC‑‑CC‑TCTCGGGAAGAGGCGGTCGAAATAAAACAAGGTTTGAAAAACCC‑GGCAGGGGGGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGtt < 2:130348/246‑1 (MQ=255) aaGAGGAAGATTACGACATTCGTTTCCTGCGCTGCGTGGAACTGGTGGGGGAGATGAGGGGGGAGCAGAGA‑TAACC‑GTGATAAACCTGCTAAAGGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGT‑GAAAA‑‑CCCTCTCTGGAAGAGGTTGTCGAGATAAAAAAAGGTTGAAAAAAACC‑TGCCGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATc < 1:316668/251‑1 (MQ=255) gagGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCg > 2:116678/1‑251 (MQ=255) aCGACAGTCGTTTCCGGCGTGGCGGGGAACGGGTGGGGGAGATGAGGGGGGAGCAGAAA‑TAACC‑GTGATAAAACTGCTCAAAGGCGAGATAAAAAATGAGTTTTTTTGA‑TGAGTTAAAAA‑‑CC‑TCTCGGAAAGAGGCTGTCGAAATAAAACAAGGTTTAAAAAACCC‑TGCCGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTg < 1:116678/251‑1 (MQ=255) ccTGCGCTGCGTGAAAGTGGTGGGGGAGATGTGGGGGGAGCAGAG‑‑TAACCCGGAATGAATCTGCCAAAAGGGGAGGAATAAAAGGATTTTTTGGGA‑TGA‑‑TGAAAAACCC‑TCTCGGGAGGGGGCGGTCGAGATAAAAAAAGGTT‑GAAAAAACCCTGCGGGTTTGTCCCGCCACGAAAGTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCAGGCCGCATCCGTCATTCGGGGCTCAATGCCTGAt < 2:249137/251‑1 (MQ=255) gctgcgTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGAc > 2:371050/1‑251 (MQ=255) ggTGCGGGGGATGAGGGGGGAGGAGAGA‑AAACC‑GGAAAAAAACTGCTCAAAGGCGGGGAAAAAAATGA‑TTTTTTGGAAGGGGTTAAAAC‑‑CC‑GCTCGGGAAGGGTCTGACGAAATAAAAAAAGGTTAAAAAAACCC‑GGAAGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCt < 2:280009/251‑1 (MQ=255) gggAGATGATGGGGGATCAGATA‑AACCC‑GTGATAAATCGGATAAAAGGCGAGGTATAAAATGAGTTTTTTTGT‑TGAGTTGAAAA‑‑CC‑TCTTTGGAAGAGGTTGTCGAGTTAAAAAAAGGTTTGAAAAACCC‑TGCCTGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCa < 1:226313/251‑1 (MQ=255) gagaggaggggggAGAAGAGA‑TAACC‑GGGATAAACCGGCTCAAGGGGGAGTTAAAAAATGATTTTTTTTGA‑TGAGT‑GAAAA‑‑CCCTCTCGGGAAGGGGCTGTCGAAATAAAAAAAGGTTTAAAAAACCC‑GGCACGGGGGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGTAAACGGTGTTCACGCCGCAGCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAgg < 1:50299/243‑1 (MQ=255) agaTGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGc > 1:126486/1‑251 (MQ=255) gatgGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTAc > 1:65142/1‑251 (MQ=255) gCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCt > 1:183127/1‑230 (MQ=255) gCAGAGA‑TAACC‑GTGATAAAACGGATAAAGGGGGAGGTAAAAAATGATTTTTTTGGA‑TGATTAAAAAA‑‑CC‑TCTCTGGAAGGGGTTGGCGAAATAAAAAAAGGTTAAAAAAACCC‑TGCAGGGGGGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACa < 2:65142/251‑1 (MQ=255) atgaAACTGCTAAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGCTTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACACCGTATTGAAATTGc > 2:19668/1‑251 (MQ=255) ggaataAAAGGGGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCGGGAAGAGGCGGGCGAAATAAAAAAGGGTTTAAAAAACCC‑TGCCGGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATaa < 2:28700/248‑1 (MQ=255) gga‑tgaGTTAAAAA‑‑CC‑TCTCGGGAAGAGGCGGTCGAGATAAAACAAGTTTTAAAAAACCC‑TGCCGGGGTGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATcc < 1:109367/249‑1 (MQ=255) ga‑tgaGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTACGGCTGTTGTAGACCGGAAACGGCGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCgg > 1:307542/1‑251 (MQ=255) aaaa‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGCGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGc > 2:45798/1‑127 (MQ=255) tctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc > 1:266841/1‑251 (MQ=255) tctctGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc > 2:57858/1‑251 (MQ=255) ctGGAAGGGGCTGGCGAAATAAAAAAAGGTTTAAAAAACCC‑GGCCGGGGGGCCCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt < 1:119585/249‑1 (MQ=255) gaTTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt > 1:2019/1‑251 (MQ=255) | TGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGA‑TAACC‑GTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGA‑TGAGTTGAAAA‑‑CC‑TCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACC‑TGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTT > NC_000913/4628402‑4628878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |