Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913862,5590GT39.4% 31.2 / 13.2 33H16Q (CAC→CAAybiWputative pyruvate formate lyase
Reads supporting (aligned to +/- strand):  ref base G (5/15);  new base T (13/0);  total (18/15)
Fisher's exact test for biased strand distribution p-value = 2.94e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTTTTCGATCCACGAGACAGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCTCGTCGGCGGCAAAATCGGTAAT  >  NC_000913/862316‑862809
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                               
tttttCGATCCACGAGACAGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAAATAGCACCAGCGCA‑‑TTTTTTTGGGCtt                                                                                                                                                                                                                                                          >  1:297407/1‑251 (MQ=255)
 tttgtgATCCACTAGACAGTATATTCCGTGAAGAGCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTGGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCTCGACGTACCGGGATCGGCTTATCGAGATTTTTTTGATACATCTCGTTATAGTGCTGCGCGCGCTCGGGACAGACTGGCGGTTTCACAATATGCACCACCGCA‑‑TTTTTGTgcgatt                                                                                                                                                                                                                                                          <  2:243031/245‑4 (MQ=255)
         ccACGAGACAGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCgg                                                                                                                                                                                                                                                  <  1:217488/250‑1 (MQ=255)
           aCGAGACAGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGAGTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑ATTTTGTGCGCTTTAATGCGGTCg                                                                                                                                                                                                                                               <  2:244595/251‑1 (MQ=255)
                  aGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCg                                                                                                                                                                                                                                        <  1:209144/251‑1 (MQ=255)
                        ttCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGGACCCGCGCA‑‑TTTTTTTGTGCTTTTATGGGGtgtcctagcgtggccc                                                                                                                                                                                                                                  >  1:283425/1‑236 (MQ=255)
                           cGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTACAATATTCACCCAGGCA‑‑TTTTTTTGAGGTTTATAGCGGGCGCTGAGCGGGTCCCGtt                                                                                                                                                                                                                              >  1:272680/1‑251 (MQ=255)
                             ggAAGAGCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTc                                                                                                                                                                                                                            <  2:229067/251‑1 (MQ=255)
                                aGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCAACCGCGCC‑‑TTTTTTTTTGCTTTTATGCGGTCGCTGAGCGGGTCCCGTTTctgt                                                                                                                                                                                                                         >  1:28115/1‑248 (MQ=255)
                                         cggcgcgAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCCGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTCCAAAATTCACCCGCGCA‑‑TTTTTTTGCGCTTTTATGCGGTCGCTGGGCGGGTCCCGTTTCCGTGTGGTcttt                                                                                                                                                                                                              >  1:51289/1‑248 (MQ=255)
                                                           ccTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAgg                                                                                                                                                                                            <  1:331935/251‑1 (MQ=255)
                                                              ggTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTAGCCTCGTAAGGTc                                                                                                                                                                                          <  1:120868/250‑1 (MQ=255)
                                                                             aCTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTACAATATGCACCCGCGCC‑‑TTTTTTTGCGCTTTAATGCGGGCGCTGAGCGGGTCCAGTTTTAGTGTGGGCATGGTTGTTATCCTCGTAAGGTCGCGGGTAACCCTTTCt                                                                                                                                                                         >  1:5368/1‑251 (MQ=255)
                                                                              cTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAAAATGCACCAGCGCC‑‑TTTTTTTGCGGTTTTATGGGGGCGCTGAGCGTGTCCAGTTTTTGGGTGGTCATTGGTGTTTTCCTCGTAAGGTCGCGGTTAAACCTTTCTg                                                                                                                                                                        >  1:287847/1‑251 (MQ=255)
                                                                                   cGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTggcag                                                                                                                                                                    <  2:5368/250‑1 (MQ=255)
                                                                                    gtgtTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCATAATAATGCCCCCCGCC‑‑CTTTTTTGCGCTTTTATGTGGGCGCTGGGCGGGTCCAGTTTTATGGGGGGTCTGGTTGTTTTCCTCGTGATGTCGCGGTTTAcccctttttgccggg                                                                                                                                                                  >  2:152975/1‑239 (MQ=255)
                                                                                                        gATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTACAATAATGAACACCGCA‑‑TTTTTTTGGGCTTTTATGCGGGTGCCGGGCGGGGCCAGATTTATGGTGGTCATGGTTGTTATTCTCGTAAAGTCGCGGGTTACCCATTTTGGCCGGCCTACTTCTTGGGCaagtacg                                                                                                                                              >  1:326060/1‑246 (MQ=255)
                                                                                                               cAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTAACAAAATTACCACCGCA‑‑TTTTTTTGCGCTTTTATGCGGTCGCCTAGCGGGGTCCACTTTAGCGTGGGGCTGGTTGTTTTCATCGTGAGGTGGCGGGTTAACCTTTCTGGCCGGCCTACTGGCGGGCAAAAACGAGCatttt                                                                                                                                      >  2:335832/1‑247 (MQ=255)
                                                                                                                     aTGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTCCCATATGCACCCACGCC‑‑TTTTTTTTCGCTTTTATGCGGGCGCCGGGCGTGTCCCGGTTCTGTGGGGTGCTTGGTTTTATTCTCGTAAGGGCGCGGGTATCCCTTTCTGGGAGGCATAATGCTTGGGCaaatcgcgcaagtttggcgg                                                                                                                                 >  1:367620/1‑234 (MQ=255)
                                                                                                                                           cGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTACAATATGCCCCCACGCA‑‑CTTTTGTGCGCTTTAATGCGGGCCCTTAGCGTGTCCAGTTTCCGTTGGGGCATGGTTGTTATCCTCGTAAGGTCGCGGGTAAACCTTTCTGGGAGGCATACTGCTGGGCAAAGTCTAGCAATTTTGGCGCATCCAGCGGGTTTTTCGGGGCg                                                                                                          >  1:235543/1‑251 (MQ=255)
                                                                                                                                              aCCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATACACCAGCGCA‑‑TTTTTTTGCGCTTTTATGCGGGCGCTGGGCGCGTCCCGGTTTAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGACGAGCCGTTCTGGCGCATCAAGCGGTTTTTCCCGGGCGTc                                                                                                        >  1:344850/1‑250 (MQ=255)
                                                                                                                                                                       gttgATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGatat                                                                               <  2:80815/250‑1 (MQ=255)
                                                                                                                                                                            tACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTTTCAAAACGCAACACAGCAATTTTTTGTGCGCT‑‑AATGGGGGCGCAGCGCGGGTCCCGTTTTAGTGGGGGGATTGTTGTTATTCCCGTAAAGGGGCGGTTTACCCCTTCTTGGAGGCGTAATGCTGGGGAAAGAAGAGCAGTTTTGGGGCCTCAAGCGGGTTTTTCGGGGCGTCGTAGGGCCGATtaagtgaggggtgttttttg                                                                         >  1:152631/1‑236 (MQ=255)
                                                                                                                                                                                           tgctgcGCGCGCTCGGTACAGACTGGCGGTTTCACAAAATTCACCAGCGCC‑‑TTTTTTTGCGCTTTAATTCGGGCGCTGAGCGGGGCCAGTTTCCGTGTGGTCATTGTTGTTATTCTCGTAAGGGCGCGGGTAACCCTTTTTGGCAGGCATTCTGCTGGGCGAAATCGAGCCGTTCTGGCGCATCAAACGGGTTTTTCTGGGCGGCCTAAGGCAGATTTAGGAAGGGATATTTTTTGATGCCCCGCGTGTgg                                                          >  2:9135/1‑251 (MQ=255)
                                                                                                                                                                                                        cgtgaCAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGTTCGCTGAGCTTGTCCAGTTTCAGTTTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGGGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAAt                                             <  1:43555/247‑1 (MQ=255)
                                                                                                                                                                                                                      ggTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAg                                                                                               >  1:183230/1‑187 (MQ=255)
                                                                                                                                                                                                                      ggTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTGTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAg                                                                                               <  2:183230/187‑1 (MQ=255)
                                                                                                                                                                                                                         ttCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGc                            >  1:95806/1‑251 (MQ=255)
                                                                                                                                                                                                                               aaTATGCCCCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCCCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGAGTAAGTAAGTGATATTTGTTTATGCCCAGCGTGTGGTAGTGCAGAAAAGGAATTTCTCCAACGTGCAGCtc                       <  2:234497/251‑1 (MQ=255)
                                                                                                                                                                                                                                  atGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCGGCtcgtc                    >  2:296472/1‑251 (MQ=255)
                                                                                                                                                                                                                                  atGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCtcgtc                    <  1:332518/251‑1 (MQ=255)
                                                                                                                                                                                                                                          cAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCTCGTCggcggc              <  2:95806/251‑1 (MQ=255)
                                                                                                                                                                                                                                               gcA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCTCGTCGGCGGCaaaa          <  1:9135/251‑1 (MQ=255)
                                                                                                                                                                                                                                                         gtgCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCTCGTCGGCGGCAAAATCGGTAAt  >  1:313452/1‑251 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                               
TTTTTCGATCCACGAGACAGTATATTCCGGGAAGATCGGCGCGGCGCGAACTTCGCTTGCCTGGTTGCCAATGATCAACTCATCGTGTTTGATCCAGATGGTGCGATTCGCCAGGTGATGCGCCAGTGCCAGCGCGCGACGTACCGGGATCGGCTTATCGAGATGTTGTTGATACATCTCGGTATAGTGCTGCGCGCGCTCGGTACAGACTGGCGGTTTCACAATATGCACCAGCGCA‑‑TTTTTGTGCGCTTTAATGCGGTCGCTGAGCGTGTCCAGTTTCAGTGTGGTCATGGTTGTTATCCTCGTAAGGTCGCGGTTAACCCTTTCTGGCAGGCATACTGCTGGGCAAAGTCGAGCAGTTCTGGCGCATCAAGCGGTTTTTCCGGGGCGTCATAGGGCAGATTAAGTAAGTGATATTTGTTGATGCCCAGCGTGTGGTAGGGCAGAAAATGAATTTCGCCAACGTGCAGCTCGTCGGCGGCAAAATCGGTAAT  >  NC_000913/862316‑862809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: