mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,209,791 | 0 | G | A | 53.0% | ‑2.0 / 111.8 | 83 | noncoding (18/76 nt) | gltV | tRNA‑Glu |
| * | NC_000913 | 4,296,268 | 0 | T | C | 48.3% | 4.6 / 33.7 | 29 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,206,435 | 0 | C | T | 45.0% | 2.7 / 10.8 | 20 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 599,576 | 0 | T | G | 39.5% | 18.5 / 20.5 | 39 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 4,256,069 | 0 | G | C | 36.6% | 46.2 / 14.3 | 42 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 3,943,634 | 0 | A | G | 34.3% | 41.6 / 26.7 | 35 | intergenic (+124/‑70) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 458,189 | 0 | A | G | 31.6% | 56.3 / 10.1 | 40 | D255G (GAT→GGT) | clpX | ATP‑dependent Clp protease ATP‑binding subunit ClpX |
| * | NC_000913 | 3,177,748 | 0 | C | A | 29.2% | 47.9 / 19.0 | 49 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 3,830,325 | 0 | G | A | 26.8% | 62.7 / 11.8 | 42 | E461K (GAA→AAA) | xanP | xanthine:H(+) symporter XanP |
| * | NC_000913 | 4,592,290 | 0 | T | G | 25.0% | 115.2 / 11.4 | 74 | F212V (TTC→GTC) | tsr | methyl‑accepting chemotaxis protein Tsr |
| * | NC_000913 | 4,457,105 | 0 | A | G | 24.6% | 111.3 / 10.1 | 62 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 119,396 | 0 | C | T | 24.1% | 102.2 / 12.7 | 55 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 4,332,791 | 0 | A | C | 24.1% | 144.3 / 17.5 | 80 | V161G (GTG→GGG) | basS | sensor histidine kinase BasS |
| * | NC_000913 | 326,791 | 0 | C | G | 22.1% | 119.2 / 12.5 | 69 | G153R (GGC→CGC) | betA | choline dehydrogenase |
| * | NC_000913 | 4,502,761 | 0 | G | C | 22.0% | 199.1 / 11.1 | 93 | A224G (GCG→GGG) | insG | IS4 family putative transposase |
| * | NC_000913 | 3,097,484 | 0 | C | T | 21.9% | 121.6 / 13.6 | 64 | S73F (TCC→TTC) | hemW | heme chaperone HemW |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 342712 | 43 (0.840) | 3 (0.060) | 3/482 | 3.2 | 3.0% | intergenic (+205/‑172) | yahJ/yahK | amidohydrolase family protein YahJ/aldehyde reductase, NADPH‑dependent |
| ? | NC_000913 | 3832566 = | 152 (2.980) | coding (1972/2319 nt) | yicI | alpha‑D‑xyloside xylohydrolase | |||||