mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 14,172 | C→T | A2V (GCT→GTT) | dnaJ → | chaperone protein DnaJ |
| RA | 64,536 | C→T | V415V (GTG→GTA) | polB ← | DNA polymerase II |
| RA | 64,539 | T→C | S414S (TCA→TCG) | polB ← | DNA polymerase II |
| RA | 64,593 | C→T | P396P (CCG→CCA) | polB ← | DNA polymerase II |
| RA | 64,635 | A→G | H382H (CAT→CAC) | polB ← | DNA polymerase II |
| RA | 64,641 | T→A | R380R (CGA→CGT) | polB ← | DNA polymerase II |
| RA | 64,644 | C→A | P379P (CCG→CCT) | polB ← | DNA polymerase II |
| RA | 64,665 | T→C | A372A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,677 | A→T | G368G (GGT→GGA) | polB ← | DNA polymerase II |
| RA | 64,680 | G→C | G367G (GGC→GGG) | polB ← | DNA polymerase II |
| RA | 64,686 | T→G | R365R (CGA→CGC) | polB ← | DNA polymerase II |
| RA | 64,692 | C→T | V363V (GTG→GTA) | polB ← | DNA polymerase II |
| RA | 64,713 | T→C | A356A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,716 | C→T | R355R (CGG→CGA) | polB ← | DNA polymerase II |
| RA | 64,749 | G→A | H344H (CAC→CAT) | polB ← | DNA polymerase II |
| RA | 64,755 | G→A | I342I (ATC→ATT) | polB ← | DNA polymerase II |
| RA | 64,794 | T→C | A329A (GCA→GCG) | polB ← | DNA polymerase II |
| RA | 64,883 | G→A | L300L (CTA→TTA) | polB ← | DNA polymerase II |
| RA | 64,896 | A→G | T295T (ACT→ACC) | polB ← | DNA polymerase II |
| RA | 65,028 | G→A | S251S (AGC→AGT) | polB ← | DNA polymerase II |
| RA | 65,031 | A→G | N250N (AAT→AAC) | polB ← | DNA polymerase II |
| RA | 65,043 | A→C | L246L (CTT→CTG) | polB ← | DNA polymerase II |
| RA | 65,046 | A→C | R245R (CGT→CGG) | polB ← | DNA polymerase II |
| RA | 65,057 | G→T | L242I (CTT→ATT) | polB ← | DNA polymerase II |
| RA | 65,169 | C→T | L204L (TTG→CTA) | polB ← | DNA polymerase II |
| RA | 65,171 | A→G | L204L (TTG→CTA) | polB ← | DNA polymerase II |
| RA | 65,202 | G→A | F193F (TTC→TTT) | polB ← | DNA polymerase II |
| RA | 65,208 | A→G | L191L (CTT→CTC) | polB ← | DNA polymerase II |
| RA | 65,213 | A→C | S190A (TCG→GCG) | polB ← | DNA polymerase II |
| RA | 65,232 | C→T | P183P (CCG→CCA) | polB ← | DNA polymerase II |
| RA | 65,316 | T→A | I155I (ATA→ATT) | polB ← | DNA polymerase II |
| RA | 65,381 | T→C | T134A (ACT→GCT) | polB ← | DNA polymerase II |
| RA | 65,454 | A→G | R109R (CGT→CGC) | polB ← | DNA polymerase II |
| RA | 65,594 | A→C | F63V (TTT→GTT) | polB ← | DNA polymerase II |
| RA | 65,785 | A→T | intergenic (‑5/+70) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,788 | A→T | intergenic (‑8/+67) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,811 | G→T | intergenic (‑31/+44) | polB ← / ← araD | DNA polymerase II/L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 65,905 | C→T | D216N (GAT→AAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,024 | Δ1 bp | coding (527/696 nt) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,032 | C→T | P173P (CCG→CCA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,041 | G→A | S170S (TCC→TCT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,053 | A→G | V166V (GTT→GTC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,092 | A→G | F153F (TTT→TTC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,134 | G→A | G139G (GGC→GGT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,227 | A→G | G108G (GGT→GGC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,245 | G→A | T102T (ACC→ACT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,263 | C→T | T96T (ACG→ACA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,266 | A→G | H95H (CAT→CAC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,287 | G→C | P88P (CCC→CCG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,308 | C→T | R81R (CGG→CGA) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,323 | G→A | D76D (GAC→GAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,343 | T→C | T70A (ACG→GCG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,403 | C→T | V50I (GTC→ATC) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,494 | G→A | H19H (CAC→CAT) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,518 | T→C | E11E (GAA→GAG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase AraD |
| RA | 66,686 | C→G | intergenic (‑136/+149) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,688 | G→A | intergenic (‑138/+147) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,784 | A→T | intergenic (‑234/+51) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,819 | T→C | intergenic (‑269/+16) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,823 | G→T | intergenic (‑273/+12) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,830 | G→A | intergenic (‑280/+5) | araD ← / ← araA | L‑ribulose‑5‑phosphate 4‑epimerase AraD/L‑arabinose isomerase |
| RA | 66,847 | C→T | G497G (GGG→GGA) | araA ← | L‑arabinose isomerase |
| RA | 66,898 | T→G | T480T (ACA→ACC) | araA ← | L‑arabinose isomerase |
| RA | 66,901 | G→A | D479D (GAC→GAT) | araA ← | L‑arabinose isomerase |
| RA | 66,946 | T→C | Q464Q (CAA→CAG) | araA ← | L‑arabinose isomerase |
| RA | 66,970 | T→C | A456A (GCA→GCG) | araA ← | L‑arabinose isomerase |
| RA | 67,111 | G→A | C409C (TGC→TGT) | araA ← | L‑arabinose isomerase |
| RA | 67,123 | T→C | L405L (CTA→CTG) | araA ← | L‑arabinose isomerase |
| RA | 67,152 | A→G | L396L (TTG→CTG) | araA ← | L‑arabinose isomerase |
| RA | 67,171 | G→A | G389G (GGC→GGT) | araA ← | L‑arabinose isomerase |
| RA | 67,195 | G→T | R381R (CGC→CGA) | araA ← | L‑arabinose isomerase |
| RA | 67,259 | G→A | A360V (GCA→GTA) | araA ← | L‑arabinose isomerase |
| RA | 67,264 | G→A | I358I (ATC→ATT) | araA ← | L‑arabinose isomerase |
| RA | 67,405 | A→G | T311T (ACT→ACC) | araA ← | L‑arabinose isomerase |
| RA | 67,471 | A→T | P289P (CCT→CCA) | araA ← | L‑arabinose isomerase |
| RA | 67,596 | T→C | K248E (AAA→GAA) | araA ← | L‑arabinose isomerase |
| RA | 67,612 | G→T | A242A (GCC→GCA) | araA ← | L‑arabinose isomerase |
| RA | 67,759 | G→A | G193G (GGC→GGT) | araA ← | L‑arabinose isomerase |
| RA | 67,798 | T→A | R180R (CGA→CGT) | araA ← | L‑arabinose isomerase |
| RA | 67,834 | G→A | V168V (GTC→GTT) | araA ← | L‑arabinose isomerase |
| RA | 67,900 | C→G | V146V (GTG→GTC) | araA ← | L‑arabinose isomerase |
| RA | 68,236 | G→A | V34V (GTC→GTT) | araA ← | L‑arabinose isomerase |
| RA | 68,468 | C→T | E527E (GAG→GAA) | araB ← | ribulokinase |
| RA | 68,476 | A→G | C525R (TGC→CGC) | araB ← | ribulokinase |
| RA | 68,519 | A→G | A510A (GCT→GCC) | araB ← | ribulokinase |
| RA | 68,678 | T→C | A457A (GCA→GCG) | araB ← | ribulokinase |
| RA | 68,693 | A→G | V452V (GTT→GTC) | araB ← | ribulokinase |
| RA | 68,837 | C→T | P404P (CCG→CCA) | araB ← | ribulokinase |
| RA | 68,840 | T→C | T403S (ACA→TCG) | araB ← | ribulokinase |
| RA | 68,842 | T→A | T403S (ACA→TCG) | araB ← | ribulokinase |
| RA | 68,846 | G→A | R401R (CGC→CGT) | araB ← | ribulokinase |
| RA | 68,849 | G→A | G400G (GGC→GGT) | araB ← | ribulokinase |
| RA | 68,956 | T→C | T365A (ACG→GCG) | araB ← | ribulokinase |
| RA | 69,001 | C→T | G350S (GGC→AGC) | araB ← | ribulokinase |
| RA | 69,014 | A→G | F345F (TTT→TTC) | araB ← | ribulokinase |
| RA | 69,323 | A→G | T242T (ACT→ACC) | araB ← | ribulokinase |
| RA | 69,400 | G→A | L217L (CTG→TTG) | araB ← | ribulokinase |
| RA | 69,605 | A→G | G148G (GGT→GGC) | araB ← | ribulokinase |
| RA | 69,611 | G→A | Y146Y (TAC→TAT) | araB ← | ribulokinase |
| RA | 69,629 | G→A | N140N (AAC→AAT) | araB ← | ribulokinase |
| RA | 69,665 | Δ1 bp | coding (384/1701 nt) | araB ← | ribulokinase |
| RA | 69,672 | +T | coding (377/1701 nt) | araB ← | ribulokinase |
| RA | 69,752 | T→A | G99G (GGA→GGT) | araB ← | ribulokinase |
| RA | 69,935 | C→T | Q38Q (CAG→CAA) | araB ← | ribulokinase |
| RA | 69,981 | G→C | T23S (ACC→AGC) | araB ← | ribulokinase |
| RA | 69,983 | A→G | A22A (GCT→GCC) | araB ← | ribulokinase |
| RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| RA | 70,371 | T→C | intergenic (‑323/‑16) | araB ← / → araC | ribulokinase/DNA‑binding transcriptional dual regulator AraC |
| RA | 70,434 | C→T | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 70,581 | C→T | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 70,740 | T→G | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,079 | C→T | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,082 | T→C | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,085 | T→C | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,109 | T→C | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,175 | A→G | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,214 | T→C | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 71,386 | C→T | S12S (TCC→TCT) | yabI → | DedA family protein YabI |
| RA | 71,543 | A→G | I65V (ATT→GTC) | yabI → | DedA family protein YabI |
| RA | 71,545 | T→C | I65V (ATT→GTC) | yabI → | DedA family protein YabI |
| RA | 71,548 | C→T | G66G (GGC→GGT) | yabI → | DedA family protein YabI |
| RA | 71,551 | 2 bp→TC | coding (201‑202/765 nt) | yabI → | DedA family protein YabI |
| RA | 71,555 | A→C | M69L (ATG→CTG) | yabI → | DedA family protein YabI |
| RA | 71,569 | T→C | I73I (ATT→ATC) | yabI → | DedA family protein YabI |
| RA | 71,572 | T→C | S74S (TCT→TCC) | yabI → | DedA family protein YabI |
| RA | 71,584 | T→C | G78G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 71,639 | C→T | L97L (CTA→TTA) | yabI → | DedA family protein YabI |
| RA | 71,644 | T→C | L98L (CTT→CTC) | yabI → | DedA family protein YabI |
| RA | 71,701 | T→C | R117R (CGT→CGC) | yabI → | DedA family protein YabI |
| RA | 71,764 | T→A | A138A (GCT→GCA) | yabI → | DedA family protein YabI |
| RA | 71,770 | T→C | F140F (TTT→TTC) | yabI → | DedA family protein YabI |
| RA | 71,806 | G→A | P152P (CCG→CCA) | yabI → | DedA family protein YabI |
| RA | 71,824 | A→T | P158P (CCA→CCT) | yabI → | DedA family protein YabI |
| RA | 71,857 | T→A | P169P (CCT→CCA) | yabI → | DedA family protein YabI |
| RA | 71,875 | T→C | G175G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 71,899 | A→G | A183A (GCA→GCG) | yabI → | DedA family protein YabI |
| RA | 71,902 | A→G | T184T (ACA→ACG) | yabI → | DedA family protein YabI |
| RA | 71,908 | G→A | V186V (GTG→GTA) | yabI → | DedA family protein YabI |
| RA | 71,912 | T→G | L188V (TTG→GTG) | yabI → | DedA family protein YabI |
| RA | 71,962 | G→A | A204A (GCG→GCA) | yabI → | DedA family protein YabI |
| RA | 71,965 | T→C | T205T (ACT→ACC) | yabI → | DedA family protein YabI |
| RA | 71,968 | C→T | D206D (GAC→GAT) | yabI → | DedA family protein YabI |
| RA | 71,974 | G→A | L208L (TTG→TTA) | yabI → | DedA family protein YabI |
| RA | 71,989 | C→G | S213S (TCC→TCG) | yabI → | DedA family protein YabI |
| RA | 71,995 | T→C | G215G (GGT→GGC) | yabI → | DedA family protein YabI |
| RA | 72,117 | A→G | intergenic (+2/+112) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,121 | A→T | intergenic (+6/+108) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,151 | 2 bp→GA | intergenic (+36/+77) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,183 | 2 bp→GT | intergenic (+68/+45) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,202 | C→T | intergenic (+87/+27) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,217 | C→T | intergenic (+102/+12) | yabI → / ← thiQ | DedA family protein YabI/thiamine ABC transporter ATP binding subunit |
| RA | 72,253 | C→T | S225S (TCG→TCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,290 | A→T | M213K (ATG→AAG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,322 | T→C | V202V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,325 | T→C | V201V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,349 | C→G | A193A (GCG→GCC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,361 | G→A | S189S (AGC→AGT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,367 | C→T | S187S (TCG→TCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,381 | G→A | L183L (CTA→TTA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,423 | A→G | L169L (TTG→CTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,493 | T→C | V145V (GTA→GTG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,517 | T→G | R137R (CGA→CGC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,547 | C→A | P127P (CCG→CCT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,605 | C→T | G108E (GGG→GAG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,614 | A→G | V105A (GTA→GCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,661 | T→C | A89A (GCA→GCG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,676 | G→A | S84S (AGC→AGT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,691 | C→T | E79E (GAG→GAA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,731 | A→G | M66T (ATG→ACG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,733 | A→C | T65T (ACT→ACG) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,736 | T→G | T64T (ACA→ACC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,745 | T→A | V61V (GTA→GTT) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,751 | A→G | D59D (GAT→GAC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,799 | A→G | N43N (AAT→AAC) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,820 | C→T | A36A (GCG→GCA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,862 | C→T | V22V (GTG→GTA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,892 | G→T | H12Q (CAC→CAA) | thiQ ← | thiamine ABC transporter ATP binding subunit |
| RA | 72,928 | T→C | N532D (AAT→GAT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 72,974 | C→T | L516L (CTG→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,001 | A→G | G507G (GGT→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,115 | T→G | A469A (GCA→GCC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,121 | G→A | A467A (GCC→GCT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,163 | C→G | V453V (GTG→GTC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,178 | T→C | S448S (TCA→TCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,193 | C→G | G443G (GGG→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,208 | T→C | L438L (TTA→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,214 | G→A | S436S (AGC→AGT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,253 | C→T | V423V (GTG→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,319 | T→C | P401P (CCA→CCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,328 | G→A | I398I (ATC→ATT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,331 | A→G | T397T (ACT→ACC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,413 | A→G | V370A (GTG→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,445 | C→A | L359L (CTG→CTT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,582 | C→G | V314L (GTA→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,604 | T→C | L306L (TTA→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,712 | G→T | P270P (CCC→CCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,744 | A→G | L260L (TTG→CTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,753 | G→A | L257L (CTG→TTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,763 | G→A | C253C (TGC→TGT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,777 | G→T | L249I (CTC→ATC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,790 | T→C | A244A (GCA→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,853 | C→T | A223A (GCG→GCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,868 | C→G | G218G (GGG→GGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,919 | C→T | A201A (GCG→GCA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 73,984 | 2 bp→CG | coding (537‑538/1611 nt) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,009 | T→C | Q171Q (CAA→CAG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,015 | C→T | Q169Q (CAG→CAA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,027 | G→A | I165I (ATC→ATT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,069 | C→T | L151L (CTG→CTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,081 | C→T | V147V (GTG→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,084 | A→G | H146H (CAT→CAC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,087 | G→C | A145A (GCC→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,204 | G→A | V106V (GTC→GTT) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,209 | A→G | L105L (TTG→CTG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,222 | C→T | L100L (TTG→TTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,234 | A→G | C96C (TGT→TGC) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,308 | T→C | I72V (ATA→GTA) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 74,321 | T→C | A67A (GCA→GCG) | thiP ← | thiamine ABC transporter membrane subunit |
| RA | 75,707 | C→T | L531L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,752 | 2 bp→G | coding (1547‑1548/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,758 | 1 bp→GC | coding (1542/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,767 | C→T | A511A (GCG→GCA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,806 | A→G | N498N (AAT→AAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,812 | C→T | E496E (GAG→GAA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,830 | A→G | A490A (GCT→GCC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,833 | A→G | A489A (GCT→GCC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,851 | A→G | I483I (ATT→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,854 | G→C | P482P (CCC→CCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,860 | G→A | C480C (TGC→TGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,863 | A→G | H479H (CAT→CAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,869 | T→G | L477L (CTA→CTC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,875 | T→C | P475P (CCA→CCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,881 | T→C | E473E (GAA→GAG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,887 | T→C | L471L (TTA→TTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,890 | A→G | H470H (CAT→CAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,893 | T→C | A469A (GCA→GCG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,899 | A→C | V467V (GTT→GTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,901 | 2 bp→GC | coding (1398‑1399/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,905 | G→A | F465F (TTC→TTT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,908 | G→A | D464D (GAC→GAT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,920 | G→C | T460T (ACC→ACG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,938 | T→A | L454L (CTA→CTT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,950 | A→G | S450S (AGT→AGC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,953 | T→C | E449E (GAA→GAG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,966 | 2 bp→TC | coding (1333‑1334/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 75,984 | 2 bp→CT | coding (1315‑1316/1656 nt) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,000 | T→C | K434E (AAA→GAA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,082 | T→C | L406L (CTA→CTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,086 | G→A | T405I (ACC→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,283 | C→T | L339L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,334 | G→A | G322G (GGC→GGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,358 | C→A | G314G (GGG→GGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,364 | G→A | A312A (GCC→GCT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,478 | A→G | I274I (ATT→ATC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,576 | G→A | L242L (CTG→TTG) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,700 | A→G | D200D (GAT→GAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,727 | G→A | H191H (CAC→CAT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,775 | A→T | I175I (ATT→ATA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 76,862 | G→A | I146I (ATC→ATT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,021 | C→T | L93L (CTG→CTA) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,027 | A→G | D91D (GAT→GAC) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,117 | G→A | R61R (CGC→CGT) | sgrR ← | DNA‑binding transcriptional dual regulator SgrR |
| RA | 77,776 | C→A | G52G (GGC→GGA) | setA → | sugar exporter SetA |
| RA | 78,406 | A→T | G262G (GGA→GGT) | setA → | sugar exporter SetA |
| RA | 78,520 | C→A | F300L (TTC→TTA) | setA → | sugar exporter SetA |
| RA | 78,524 | A→C | N302H (AAT→CAT) | setA → | sugar exporter SetA |
| RA | 78,533 | A→C | M305L (ATG→CTG) | setA → | sugar exporter SetA |
| RA | 78,761 | G→A | V381I (GTC→ATC) | setA → | sugar exporter SetA |
| RA | 79,040 | A→G | A138A (GCT→GCC) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 80,529 | C→G | G112G (GGG→GGC) | leuC ← | 3‑isopropylmalate dehydratase subunit LeuC |
| RA | 82,633 | T→G | I299I (ATA→ATC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,894 | T→G | G212G (GGA→GGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,909 | C→T | L207L (TTG→TTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,933 | G→A | I199I (ATC→ATT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 82,957 | C→T | V191V (GTG→GTA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,179 | C→T | E117E (GAG→GAA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,182 | G→A | D116D (GAC→GAT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,296 | T→C | E78E (GAA→GAG) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,317 | A→G | C71C (TGT→TGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,344 | G→A | A62A (GCC→GCT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,359 | C→T | S57S (TCG→TCA) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,371 | G→A | G53G (GGC→GGT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 83,383 | G→A | V49V (GTC→GTT) | leuA ← | 2‑isopropylmalate synthase |
| RA | 84,251 | G→T | intergenic (‑543/‑117) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,267 | G→C | intergenic (‑559/‑101) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,305 | 2 bp→CG | intergenic (‑597/‑62) | leuL ← / → leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| RA | 84,415 | A→G | K16K (AAA→AAG) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 85,481 | T→C | R11G (AGA→GGA) | yabR ← | protein YabR |
| RA | 86,241 | A→G | V204V (GTA→GTG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,271 | C→T | G214G (GGC→GGT) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,315 | C→T | T229M (ACG→ATG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,345 | G→C | C239S (TGC→TCC) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 86,658 | A→G | P343P (CCA→CCG) | ilvI → | acetolactate synthase/acetohydroxybutanoate synthase, catalytic subunit |
| RA | 87,410 | C→T | R18R (CGC→CGT) | ilvH → | acetolactate synthase/acetohydroxybutanoate synthase, regulatory subunit |
| RA | 89,089 | C→A | intergenic (+57/‑545) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,103 | G→C | intergenic (+71/‑531) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,143 | A→G | intergenic (+111/‑491) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,145 | G→T | intergenic (+113/‑489) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,239 | G→A | intergenic (+207/‑395) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,241 | C→A | intergenic (+209/‑393) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,263 | A→G | intergenic (+231/‑371) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,316 | T→C | intergenic (+284/‑318) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,321 | A→G | intergenic (+289/‑313) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,471 | T→G | intergenic (+439/‑163) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,570 | A→C | intergenic (+538/‑64) | cra → / → mraZ | DNA‑binding transcriptional dual regulator Cra/DNA‑binding transcriptional repressor MraZ |
| RA | 89,699 | T→C | Y22Y (TAT→TAC) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 89,754 | T→C | Y41H (TAT→CAT) | mraZ → | DNA‑binding transcriptional repressor MraZ |
| RA | 90,432 | A→G | E113E (GAA→GAG) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 90,435 | T→C | R114R (CGT→CGC) | rsmH → | 16S rRNA m(4)C1402 methyltransferase |
| RA | 91,904 | G→A | E164E (GAG→GAA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,916 | C→T | Y168Y (TAC→TAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,922 | G→A | P170P (CCG→CCA) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 91,949 | C→T | I179I (ATC→ATT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,096 | A→T | A228A (GCA→GCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,162 | C→T | N250N (AAC→AAT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,327 | G→T | P305P (CCG→CCT) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,354 | A→G | V314V (GTA→GTG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,687 | A→G | P425P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,810 | T→C | T466T (ACT→ACC) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 92,843 | A→G | P477P (CCA→CCG) | ftsI → | peptidoglycan DD‑transpeptidase FtsI |
| RA | 94,278 | G→A | A371A (GCG→GCA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 134,256 | G→T | intergenic (+44/‑132) | acnB → / → yacL | AcnB/PF06062 family protein YacL |
| JC JC | 170,117 | IS2 (–) +5 bp | coding (340‑344/798 nt) | fhuC → | iron(III) hydroxamate ABC transporter ATP binding subunit |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 275,509 | Δ97,240 bp | [mmuP]–[mhpD] | 91 genes [mmuP], mmuM, afuC, insB2, insA2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, argL, ykgS, insB3, insA3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, matA, ykgL, ykgO, ykgM, ykgR, insE1, insF1, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH, betA, betB, betI, betT, yahV, pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, [mhpD] |
|
| JC JC | 458,790 | IS186 (+) +6 bp :: Δ1 bp | intergenic (+90/‑93) | clpX → / → lon | ATP‑dependent Clp protease ATP‑binding subunit ClpX/Lon protease |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| JC JC | 480,861 | IS2 (+) +5 bp | intergenic (‑153/+389) | tomB ← / ← acrB | Hha toxicity modulator TomB/multidrug efflux pump RND permease AcrB |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 882,452 | T→G | T95P (ACC→CCC) | deoR ← | DNA‑binding transcriptional repressor DeoR |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| JC JC | 1,014,151 | IS2 (–) +5 bp | coding (893‑897/1641 nt) | pqiB → | intermembrane transport protein PqiB |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| JC JC | 1,303,314 | IS186 (+) +6 bp :: Δ1 bp | coding (416‑421/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| JC JC | 1,399,590 | IS5 (+) +4 bp | intergenic (‑64/+128) | fnr ← / ← ogt | DNA‑binding transcriptional dual regulator FNR/methylated‑DNA‑‑[protein]‑cysteine S‑methyltransferase |
| MC JC | 1,411,925 | Δ23,060 bp | [ttcA]–ynaM | 34 genes [ttcA], intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, kilS, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH5, lomR, stfR, tfaR, pinR, ynaE, ynaM |
|
| MC JC | 1,469,241 | Δ111,694 bp | IS2‑mediated | ydbA–[ydeN] | 97 genes ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, cybB, rydC, ydcA, yncP, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insQ, ydcO, sutR, rlhA, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA, sra, bdm, osmC, ddpF, ddpD, ddpC, ddpB, ddpA, ddpX, dosP, dosC, yddY, digH, gadC, gadB, pqqL, yddB, yddA, yneP, ydeM, [ydeN] |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| JC JC | 1,705,610 | IS2 (+) +5 bp | coding (361‑365/441 nt) | ydgK → | DUF2569 domain‑containing inner membrane protein YdgK |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,978,083 | +A | coding (115/351 nt) | flhD ← | DNA‑binding transcriptional dual regulator FlhD |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,176,126 | C→A | E66* (GAA→TAA) | gatZ ← | putative tagatose‑1,6‑bisphosphate aldolase 2 chaperone |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| MC JC | 2,262,279 | Δ6,678 bp | [fruK]–[lpxT] | [fruK], fruB, setB, yeiW, yeiP, yeiQ, yeiR, [lpxT] | |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| MC JC | 2,466,385 | Δ10,215 bp | intS–torI | 16 genes intS, yfdG, yfdH, yfdI, yodE, yfdK, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, yfdT, ypdJ, torI |
|
| RA | 2,481,400 | T→A | S259S (TCA→TCT) | emrY ← | tripartite efflux pump membrane subunit EmrY |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,579,943 | G→A | G103D (GGC→GAC) | tktB → | transketolase 2 |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,926,292 | C→T | intergenic (+96/‑16) | queF → / → ppnN | 7‑cyano‑7‑deazaguanine reductase/nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| JC JC | 3,546,574 | IS2 (+) +5 bp | coding (16‑20/1317 nt) | gntT → | high‑affinity gluconate transporter |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| JC JC | 3,938,768 | IS2 (+) +5 bp | coding (542‑546/993 nt) | rbsR → | DNA‑binding transcriptional dual regulator RbsR |
| RA | 3,967,260 | G→T | G282C (GGT→TGT) | rho → | transcription termination factor Rho |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,508,810 | C→T | intergenic (‑193/‑199) | insI3 ← / → insO | IS30 family transposase/IS911B regulator fragment |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,556,486 | C→T | intergenic (‑166/‑88) | yjiC ← / → ytiC | DUF2686 domain‑containing protein YjiC/protein YtiC |
| RA | 4,561,368 | C→T | P147S (CCG→TCG) | kptA → | RNA 2'‑phosphotransferase |
| RA | 4,563,778 | (G)6→5 | coding (148/258 nt) | ytiA ← | uncharacterized protein YtiA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196312 | 1211454 | 15143 | 31 [29] | [28] 31 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 94 [0] | [0] 96 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423822–3424234 | 3424477–3424239 | 6–656 | 31 [30] | [26] 32 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3708467 | 3708621 | 155 | 37 [0] | [29] 34 | [proK] | [proK] |
| * | * | ÷ | NC_000913 | 4541024 | 4542041 | 1018 | 105 [0] | [0] 105 | [fimB]–[fimE] | [fimB],[fimE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 16974 = | 44 (0.470) | 52 (0.560) | 36/590 | 1.2 | 54.2% | noncoding (23/59 nt) | sokC | small regulatory RNA antitoxin SokC |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 16976 | 45 (0.490) | 62 (0.680) | 39/584 | 0.9 | 58.0% | noncoding (25/59 nt) | sokC | small regulatory RNA antitoxin SokC |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 257907 | 2 (0.020) | 112 (1.240) | 66/574 | 0.1 | 99.1% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 family transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
| * | ? | NC_000913 | 607765 = | 45 (0.490) | 107 (1.160) | 65/588 | 0.1 | 70.4% | noncoding (28/60 nt) | sokE | small RNA SokE |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 607767 | 44 (0.480) | 61 (0.660) | 36/586 | 1.2 | 58.1% | noncoding (26/60 nt) | sokE | small RNA SokE |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | 729860 = | 31 (0.330) | 45 (0.490) | 31/590 | 1.6 | 59.2% | coding (278/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NC_000913 | 3720633 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 729862 | 31 (0.330) | 34 (0.370) | 25/590 | 2.3 | 52.3% | coding (280/4194 nt) | rhsC | rhs element protein RhsC |
| ? | NC_000913 | = 3722075 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 1293199 | 90 (0.970) | 33 (0.360) | 21/590 | 2.9 | 26.8% | intergenic (‑277/‑328) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| ? | NC_000913 | 1299499 = | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 94 (1.010) | 60/590 | 0.2 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | = 1470516 | NA (NA) | 50 (0.540) | 37/590 | 1.1 | 39.7% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 2756223 = | 76 (0.820) | coding (65/1242 nt) | intA | integrase IntA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 105 (1.130) | 69/590 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4541023 | 0 (0.000) | coding (67/603 nt) | fimB | Type 1 fimbriae regulatory protein FimB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 96 (1.040) | 64/590 | 0.1 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | = 2756224 | 76 (0.820) | 66 (0.710) | 37/588 | 1.1 | 46.5% | coding (66/1242 nt) | intA | integrase IntA |
| ? | NC_000913 | = 4508679 | NA (NA) | noncoding (1/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 3584195 | NA (NA) | 105 (1.130) | 68/590 | 0.1 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4542042 = | 0 (0.000) | coding (6/597 nt) | fimE | regulator for fimA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 30 (0.320) | 23/588 | 2.6 | 22.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4497973 | 103 (1.120) | intergenic (+1484/‑299) | leuX/insC6 | tRNA‑Leu/IS2 insertion element repressor InsA | |||||
| * | ? | NC_000913 | = 3708466 | 0 (0.000) | 37 (0.630) | 23/374 | 1.0 | 100% | intergenic (‑761/+150) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| ? | NC_000913 | 3708635 = | 0 (0.000) | noncoding (58/77 nt) | proK | tRNA‑Pro | |||||
| * | ? | NC_000913 | 3720633 = | NA (NA) | 49 (0.530) | 35/588 | 1.2 | 47.2% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 4430711 = | 55 (0.590) | coding (848/1413 nt) | cycA | D‑serine/alanine/glycine/:H(+)symporter | |||||
| * | ? | NC_000913 | = 3722075 | NA (NA) | 40 (0.430) | 32/588 | 1.5 | 40.4% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 4430713 | 59 (0.640) | coding (850/1413 nt) | cycA | D‑serine/alanine/glycine/:H(+)symporter | |||||