#=GENOME_DIFF 1.0 #=CREATED 13:39:54 10 Oct 2025 #=PROGRAM breseq 0.39.0 #=COMMAND breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8454_S8_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8454_S8_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8454_S8_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=REFSEQ /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8454_S8_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz #=READSEQ /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8454_S8_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz #=CONVERTED-BASES 428608539 #=CONVERTED-READS 1450118 #=INPUT-BASES 428701977 #=INPUT-READS 1450438 #=MAPPED-BASES 412117203 #=MAPPED-READS 1395124 SNP 1 428 NC_000913 14172 T SNP 2 431 NC_000913 64536 T SNP 3 432 NC_000913 64539 C SNP 4 433 NC_000913 64593 T SNP 5 434 NC_000913 64635 G SNP 6 435 NC_000913 64641 A SNP 7 436 NC_000913 64644 A SNP 8 437 NC_000913 64665 C SNP 9 438 NC_000913 64677 T SNP 10 439 NC_000913 64680 C SNP 11 440 NC_000913 64686 G SNP 12 441 NC_000913 64692 T SNP 13 442 NC_000913 64713 C SNP 14 443 NC_000913 64716 T SNP 15 444 NC_000913 64749 A SNP 16 445 NC_000913 64755 A SNP 17 446 NC_000913 64794 C SNP 18 447 NC_000913 64883 A SNP 19 448 NC_000913 64896 G SNP 20 449 NC_000913 65028 A SNP 21 450 NC_000913 65031 G SNP 22 451 NC_000913 65043 C SNP 23 452 NC_000913 65046 C SNP 24 453 NC_000913 65057 T SNP 25 454 NC_000913 65169 T SNP 26 455 NC_000913 65171 G SNP 27 456 NC_000913 65202 A SNP 28 457 NC_000913 65208 G SNP 29 458 NC_000913 65213 C SNP 30 459 NC_000913 65232 T SNP 31 460 NC_000913 65316 A SNP 32 461 NC_000913 65381 C SNP 33 462 NC_000913 65454 G SNP 34 463 NC_000913 65594 C SNP 35 464 NC_000913 65785 T SNP 36 465 NC_000913 65788 T SNP 37 466 NC_000913 65811 T SNP 38 467 NC_000913 65905 T DEL 39 468 NC_000913 66024 1 SNP 40 469 NC_000913 66032 T SNP 41 470 NC_000913 66041 A SNP 42 471 NC_000913 66053 G SNP 43 472 NC_000913 66092 G SNP 44 473 NC_000913 66134 A SNP 45 474 NC_000913 66227 G SNP 46 475 NC_000913 66245 A SNP 47 476 NC_000913 66263 T SNP 48 477 NC_000913 66266 G SNP 49 478 NC_000913 66287 C SNP 50 479 NC_000913 66308 T SNP 51 480 NC_000913 66323 A SNP 52 481 NC_000913 66343 C SNP 53 482 NC_000913 66403 T SNP 54 483 NC_000913 66494 A SNP 55 484 NC_000913 66518 C SNP 56 485 NC_000913 66686 G SNP 57 486 NC_000913 66688 A SNP 58 487 NC_000913 66784 T SNP 59 488 NC_000913 66819 C SNP 60 489 NC_000913 66823 T SNP 61 490 NC_000913 66830 A SNP 62 491 NC_000913 66847 T SNP 63 492 NC_000913 66898 G SNP 64 493 NC_000913 66901 A SNP 65 494 NC_000913 66946 C SNP 66 495 NC_000913 66970 C SNP 67 496 NC_000913 67111 A SNP 68 497 NC_000913 67123 C SNP 69 498 NC_000913 67152 G SNP 70 499 NC_000913 67171 A SNP 71 500 NC_000913 67195 T SNP 72 501 NC_000913 67259 A SNP 73 502 NC_000913 67264 A SNP 74 503 NC_000913 67405 G SNP 75 504 NC_000913 67471 T SNP 76 505 NC_000913 67596 C SNP 77 506 NC_000913 67612 T SNP 78 507 NC_000913 67759 A SNP 79 508 NC_000913 67798 A SNP 80 509 NC_000913 67834 A SNP 81 510 NC_000913 67900 G SNP 82 511 NC_000913 68236 A SNP 83 512 NC_000913 68468 T SNP 84 513 NC_000913 68476 G SNP 85 514 NC_000913 68519 G SNP 86 515 NC_000913 68678 C SNP 87 516 NC_000913 68693 G SNP 88 517 NC_000913 68837 T SNP 89 518 NC_000913 68840 C SNP 90 519 NC_000913 68842 A SNP 91 520 NC_000913 68846 A SNP 92 521 NC_000913 68849 A SNP 93 522 NC_000913 68956 C SNP 94 523 NC_000913 69001 T SNP 95 524 NC_000913 69014 G SNP 96 525 NC_000913 69323 G SNP 97 526 NC_000913 69400 A SNP 98 527 NC_000913 69605 G SNP 99 528 NC_000913 69611 A SNP 100 529 NC_000913 69629 A DEL 101 530 NC_000913 69665 1 INS 102 531 NC_000913 69672 T SNP 103 532 NC_000913 69752 A SNP 104 533 NC_000913 69935 T SNP 105 534 NC_000913 69981 C SNP 106 535 NC_000913 69983 G SNP 107 536 NC_000913 70289 T SNP 108 537 NC_000913 70371 C SNP 109 538 NC_000913 70434 T SNP 110 539 NC_000913 70581 T SNP 111 540 NC_000913 70740 G SNP 112 541 NC_000913 71079 T SNP 113 542 NC_000913 71082 C SNP 114 543 NC_000913 71085 C SNP 115 544 NC_000913 71109 C SNP 116 545 NC_000913 71175 G SNP 117 546 NC_000913 71214 C SNP 118 547 NC_000913 71386 T SNP 119 548 NC_000913 71543 G SNP 120 549 NC_000913 71545 C SNP 121 550 NC_000913 71548 T SUB 122 551,552 NC_000913 71551 2 TC SNP 123 553 NC_000913 71555 C SNP 124 554 NC_000913 71569 C SNP 125 555 NC_000913 71572 C SNP 126 556 NC_000913 71584 C SNP 127 557 NC_000913 71639 T SNP 128 558 NC_000913 71644 C SNP 129 559 NC_000913 71701 C SNP 130 560 NC_000913 71764 A SNP 131 561 NC_000913 71770 C SNP 132 562 NC_000913 71806 A SNP 133 563 NC_000913 71824 T SNP 134 564 NC_000913 71857 A SNP 135 565 NC_000913 71875 C SNP 136 566 NC_000913 71899 G SNP 137 567 NC_000913 71902 G SNP 138 568 NC_000913 71908 A SNP 139 569 NC_000913 71912 G SNP 140 570 NC_000913 71962 A SNP 141 571 NC_000913 71965 C SNP 142 572 NC_000913 71968 T SNP 143 573 NC_000913 71974 A SNP 144 574 NC_000913 71989 G SNP 145 575 NC_000913 71995 C SNP 146 576 NC_000913 72117 G SNP 147 577 NC_000913 72121 T SUB 148 578,579 NC_000913 72151 2 GA SUB 149 580,581 NC_000913 72183 2 GT SNP 150 582 NC_000913 72202 T SNP 151 583 NC_000913 72217 T SNP 152 584 NC_000913 72253 T SNP 153 585 NC_000913 72290 T SNP 154 586 NC_000913 72322 C SNP 155 587 NC_000913 72325 C SNP 156 588 NC_000913 72349 G SNP 157 589 NC_000913 72361 A SNP 158 590 NC_000913 72367 T SNP 159 591 NC_000913 72381 A SNP 160 592 NC_000913 72423 G SNP 161 593 NC_000913 72493 C SNP 162 594 NC_000913 72517 G SNP 163 595 NC_000913 72547 A SNP 164 596 NC_000913 72605 T SNP 165 597 NC_000913 72614 G SNP 166 598 NC_000913 72661 C SNP 167 599 NC_000913 72676 A SNP 168 600 NC_000913 72691 T SNP 169 601 NC_000913 72731 G SNP 170 602 NC_000913 72733 C SNP 171 603 NC_000913 72736 G SNP 172 604 NC_000913 72745 A SNP 173 605 NC_000913 72751 G SNP 174 606 NC_000913 72799 G SNP 175 607 NC_000913 72820 T SNP 176 608 NC_000913 72862 T SNP 177 609 NC_000913 72892 T SNP 178 610 NC_000913 72928 C SNP 179 611 NC_000913 72974 T SNP 180 612 NC_000913 73001 G SNP 181 613 NC_000913 73115 G SNP 182 614 NC_000913 73121 A SNP 183 615 NC_000913 73163 G SNP 184 616 NC_000913 73178 C SNP 185 617 NC_000913 73193 G SNP 186 618 NC_000913 73208 C SNP 187 619 NC_000913 73214 A SNP 188 620 NC_000913 73253 T SNP 189 621 NC_000913 73319 C SNP 190 622 NC_000913 73328 A SNP 191 623 NC_000913 73331 G SNP 192 624 NC_000913 73413 G SNP 193 625 NC_000913 73445 A SNP 194 626 NC_000913 73582 G SNP 195 627 NC_000913 73604 C SNP 196 628 NC_000913 73712 T SNP 197 629 NC_000913 73744 G SNP 198 630 NC_000913 73753 A SNP 199 631 NC_000913 73763 A SNP 200 632 NC_000913 73777 T SNP 201 633 NC_000913 73790 C SNP 202 634 NC_000913 73853 T SNP 203 635 NC_000913 73868 G SNP 204 636 NC_000913 73919 T SUB 205 637,638 NC_000913 73984 2 CG SNP 206 639 NC_000913 74009 C SNP 207 640 NC_000913 74015 T SNP 208 641 NC_000913 74027 A SNP 209 642 NC_000913 74069 T SNP 210 643 NC_000913 74081 T SNP 211 644 NC_000913 74084 G SNP 212 645 NC_000913 74087 C SNP 213 646 NC_000913 74204 A SNP 214 647 NC_000913 74209 G SNP 215 648 NC_000913 74222 T SNP 216 649 NC_000913 74234 G SNP 217 650 NC_000913 74308 C SNP 218 651 NC_000913 74321 C SNP 219 652 NC_000913 75707 T SUB 220 653,654 NC_000913 75752 2 G SUB 221 655,656 NC_000913 75758 1 GC SNP 222 657 NC_000913 75767 T SNP 223 658 NC_000913 75806 G SNP 224 659 NC_000913 75812 T SNP 225 660 NC_000913 75830 G SNP 226 661 NC_000913 75833 G SNP 227 662 NC_000913 75851 G SNP 228 663 NC_000913 75854 C SNP 229 664 NC_000913 75860 A SNP 230 665 NC_000913 75863 G SNP 231 666 NC_000913 75869 G SNP 232 667 NC_000913 75875 C SNP 233 668 NC_000913 75881 C SNP 234 669 NC_000913 75887 C SNP 235 670 NC_000913 75890 G SNP 236 671 NC_000913 75893 C SNP 237 672 NC_000913 75899 C SUB 238 673,674 NC_000913 75901 2 GC SNP 239 675 NC_000913 75905 A SNP 240 676 NC_000913 75908 A SNP 241 677 NC_000913 75920 C SNP 242 678 NC_000913 75938 A SNP 243 679 NC_000913 75950 G SNP 244 680 NC_000913 75953 C SUB 245 681,682 NC_000913 75966 2 TC SUB 246 683,684 NC_000913 75984 2 CT SNP 247 685 NC_000913 76000 C SNP 248 686 NC_000913 76082 C SNP 249 687 NC_000913 76086 A SNP 250 688 NC_000913 76283 T SNP 251 689 NC_000913 76334 A SNP 252 690 NC_000913 76358 A SNP 253 691 NC_000913 76364 A SNP 254 692 NC_000913 76478 G SNP 255 693 NC_000913 76576 A SNP 256 694 NC_000913 76700 G SNP 257 695 NC_000913 76727 A SNP 258 696 NC_000913 76775 T SNP 259 697 NC_000913 76862 A SNP 260 698 NC_000913 77021 T SNP 261 699 NC_000913 77027 G SNP 262 700 NC_000913 77117 A SNP 263 701 NC_000913 77776 A SNP 264 702 NC_000913 78406 T SNP 265 703 NC_000913 78520 A SNP 266 704 NC_000913 78524 C SNP 267 705 NC_000913 78533 C SNP 268 706 NC_000913 78761 A SNP 269 707 NC_000913 79040 G SNP 270 708 NC_000913 80529 G SNP 271 709 NC_000913 82633 G SNP 272 710 NC_000913 82894 G SNP 273 711 NC_000913 82909 T SNP 274 712 NC_000913 82933 A SNP 275 713 NC_000913 82957 T SNP 276 714 NC_000913 83179 T SNP 277 715 NC_000913 83182 A SNP 278 716 NC_000913 83296 C SNP 279 717 NC_000913 83317 G SNP 280 718 NC_000913 83344 A SNP 281 719 NC_000913 83359 T SNP 282 720 NC_000913 83371 A SNP 283 721 NC_000913 83383 A SNP 284 722 NC_000913 84251 T SNP 285 723 NC_000913 84267 C SUB 286 724,725 NC_000913 84305 2 CG SNP 287 726 NC_000913 84415 G SNP 288 727 NC_000913 85481 C SNP 289 728 NC_000913 86241 G SNP 290 729 NC_000913 86271 T SNP 291 730 NC_000913 86315 T SNP 292 731 NC_000913 86345 C SNP 293 732 NC_000913 86658 G SNP 294 733 NC_000913 87410 T SNP 295 734 NC_000913 89089 A SNP 296 735 NC_000913 89103 C SNP 297 736 NC_000913 89143 G SNP 298 737 NC_000913 89145 T SNP 299 738 NC_000913 89239 A SNP 300 739 NC_000913 89241 A SNP 301 740 NC_000913 89263 G SNP 302 741 NC_000913 89316 C SNP 303 742 NC_000913 89321 G SNP 304 743 NC_000913 89471 G SNP 305 744 NC_000913 89570 C SNP 306 745 NC_000913 89699 C SNP 307 746 NC_000913 89754 C SNP 308 747 NC_000913 90432 G SNP 309 748 NC_000913 90435 C SNP 310 749 NC_000913 91904 A SNP 311 750 NC_000913 91916 T SNP 312 751 NC_000913 91922 A SNP 313 752 NC_000913 91949 T SNP 314 753 NC_000913 92096 T SNP 315 754 NC_000913 92162 T SNP 316 755 NC_000913 92327 T SNP 317 756 NC_000913 92354 G SNP 318 757 NC_000913 92687 G SNP 319 758 NC_000913 92810 C SNP 320 759 NC_000913 92843 G SNP 321 760 NC_000913 94278 A SNP 322 761 NC_000913 134256 T MOB 323 914,915 NC_000913 170117 IS2 -1 5 SNP 324 763 NC_000913 246747 T DEL 325 896,918 NC_000913 275509 97240 MOB 326 908,925 NC_000913 458790 IS186 1 6 del_end=1 SUB 327 764,765 NC_000913 480295 2 AA MOB 328 921,923 NC_000913 480861 IS2 1 5 SNP 329 766 NC_000913 690948 A SNP 330 767 NC_000913 700038 A SUB 331 769,770 NC_000913 809217 2 AG SNP 332 774 NC_000913 882452 G SNP 333 775 NC_000913 968837 A MOB 334 942,943 NC_000913 1014151 IS2 -1 5 SNP 335 776 NC_000913 1040126 T SNP 336 777 NC_000913 1061935 A SUB 337 780,781 NC_000913 1111727 2 TT SNP 338 782 NC_000913 1169836 G SNP 339 783 NC_000913 1189980 G SNP 340 784 NC_000913 1196220 T SNP 341 785 NC_000913 1196232 T SNP 342 786 NC_000913 1196245 C SNP 343 787 NC_000913 1196247 G SNP 344 788 NC_000913 1196277 T SNP 345 789 NC_000913 1196280 C SNP 346 790 NC_000913 1196283 G SNP 347 791 NC_000913 1196292 T SNP 348 792 NC_000913 1196304 A DEL 349 898,950 NC_000913 1299499 1199 SNP 350 797 NC_000913 1301992 T MOB 351 930,951 NC_000913 1303314 IS186 1 6 del_end=1 SNP 352 798 NC_000913 1306736 G SNP 353 799 NC_000913 1310770 G SNP 354 801 NC_000913 1337394 G SNP 355 802 NC_000913 1357202 T SNP 356 803 NC_000913 1358859 C MOB 357 954,955 NC_000913 1399590 IS5 1 4 DEL 358 899,956 NC_000913 1411925 23060 DEL 359 900,957 NC_000913 1469241 111694 mediated=IS2 SNP 360 805 NC_000913 1643679 T SNP 361 806 NC_000913 1652331 C MOB 362 958,960 NC_000913 1705610 IS2 1 5 SNP 363 809 NC_000913 1721136 T SNP 364 811 NC_000913 1776715 T SNP 365 814 NC_000913 1894839 C INS 366 817 NC_000913 1978083 A SNP 367 818 NC_000913 1987499 A SNP 368 820 NC_000913 2040433 A DEL 369 821,822 NC_000913 2173363 2 SNP 370 823 NC_000913 2176126 A SNP 371 824 NC_000913 2188087 C DEL 372 902,965 NC_000913 2262279 6678 SNP 373 826 NC_000913 2384808 T SNP 374 827 NC_000913 2410419 A DEL 375 903,967 NC_000913 2466385 10215 SNP 376 829 NC_000913 2481400 A SNP 377 830 NC_000913 2484827 T SNP 378 831 NC_000913 2579943 A MOB 379 974,975 NC_000913 2913392 IS2 -1 5 SNP 380 836 NC_000913 2926292 T SUB 381 841,842 NC_000913 3088010 2 TT SUB 382 845,846 NC_000913 3336411 2 AT SNP 383 847 NC_000913 3388041 G SNP 384 848 NC_000913 3436697 A SNP 385 849 NC_000913 3474425 C MOB 386 976,980 NC_000913 3546574 IS2 1 5 INS 387 850 NC_000913 3560455 G SNP 388 853 NC_000913 3629921 T SNP 389 854 NC_000913 3682515 T SNP 390 855 NC_000913 3707947 A SNP 391 856 NC_000913 3725176 G SNP 392 857 NC_000913 3761230 A SNP 393 858 NC_000913 3771979 T INS 394 859 NC_000913 3815883 C INS 395 999 NC_000913 3822651 CAGGAT repeat_length=6 repeat_new_copies=2 repeat_ref_copies=1 repeat_seq=CAGGAT SNP 396 860 NC_000913 3823162 T SNP 397 861 NC_000913 3869637 A SNP 398 862 NC_000913 3878536 A MOB 399 983,1000 NC_000913 3938768 IS2 1 5 SNP 400 864 NC_000913 3967260 T SNP 401 865 NC_000913 3993531 C SNP 402 866 NC_000913 3996049 A SNP 403 867 NC_000913 4011802 T SNP 404 868 NC_000913 4084903 G SNP 405 869 NC_000913 4092703 G SNP 406 870 NC_000913 4113851 A SNP 407 871 NC_000913 4143377 T SNP 408 872 NC_000913 4161248 T SNP 409 873 NC_000913 4164123 G SNP 410 874 NC_000913 4215347 A SNP 411 875 NC_000913 4223638 C INS 412 876 NC_000913 4282332 A repeat_length=1 repeat_new_copies=6 repeat_ref_copies=5 repeat_seq=A SUB 413 877,878 NC_000913 4293781 2 AT INS 414 880,881 NC_000913 4296381 GC SNP 415 882 NC_000913 4325644 T SNP 416 884 NC_000913 4392997 A SNP 417 885 NC_000913 4393552 A SNP 418 886 NC_000913 4396373 T SNP 419 887 NC_000913 4396772 C SNP 420 889 NC_000913 4473900 T SNP 421 890 NC_000913 4475493 C SNP 422 891 NC_000913 4508810 T SNP 423 892 NC_000913 4510238 G SNP 424 893 NC_000913 4556486 T SNP 425 894 NC_000913 4561368 T DEL 426 895 NC_000913 4563778 1 repeat_length=1 repeat_new_copies=5 repeat_ref_copies=6 repeat_seq=G RA 427 . NC_000913 36 0 C A bias_e_value=7138.48 bias_p_value=0.00153792 consensus_reject=FREQUENCY_CUTOFF consensus_score=223.5 fisher_strand_p_value=0.000157652 frequency=2.727e-01 ks_quality_p_value=1 major_base=C major_cov=59/29 major_frequency=7.273e-01 minor_base=A minor_cov=9/24 new_cov=9/24 polymorphism_frequency=2.727e-01 polymorphism_score=27.7 prediction=polymorphism ref_cov=59/29 total_cov=68/53 RA 428 . NC_000913 14172 0 C T consensus_score=398.0 frequency=1 major_base=T major_cov=46/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/69 RA 429 . NC_000913 58065 0 C A bias_e_value=0.00839613 bias_p_value=1.80887e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.9 fisher_strand_p_value=7.43718e-11 frequency=3.786e-01 ks_quality_p_value=1 major_base=C major_cov=27/37 major_frequency=6.214e-01 minor_base=A minor_cov=39/0 new_cov=39/0 polymorphism_frequency=3.786e-01 polymorphism_score=24.0 prediction=polymorphism ref_cov=27/37 total_cov=66/37 RA 430 . NC_000913 58594 0 G T bias_e_value=0.000181447 bias_p_value=3.90911e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=262.3 fisher_strand_p_value=1.38091e-12 frequency=2.986e-01 ks_quality_p_value=1 major_base=G major_cov=66/35 major_frequency=7.014e-01 minor_base=T minor_cov=2/41 new_cov=2/41 polymorphism_frequency=2.986e-01 polymorphism_score=13.4 prediction=polymorphism ref_cov=66/35 total_cov=68/76 RA 431 . NC_000913 64536 0 C T bias_e_value=3529760 bias_p_value=0.760454 consensus_score=215.2 fisher_strand_p_value=0.393443 frequency=1 ks_quality_p_value=1 major_base=T major_cov=37/23 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=37/23 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/24 RA 432 . NC_000913 64539 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=219.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=38/24 major_frequency=9.841e-01 minor_base=T minor_cov=1/0 new_cov=38/24 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=39/24 RA 433 . NC_000913 64593 0 C T consensus_score=241.2 frequency=1 major_base=T major_cov=48/21 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/21 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/21 RA 434 . NC_000913 64635 0 A G bias_e_value=3764510 bias_p_value=0.811028 consensus_score=266.8 fisher_strand_p_value=0.478947 frequency=1 ks_quality_p_value=0.944018 major_base=G major_cov=54/20 major_frequency=9.737e-01 minor_base=T minor_cov=1/1 new_cov=54/20 polymorphism_frequency=9.737e-01 polymorphism_score=-3.7 prediction=consensus ref_cov=0/0 total_cov=55/21 RA 435 . NC_000913 64641 0 T A consensus_score=259.3 frequency=1 major_base=A major_cov=60/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/20 RA 436 . NC_000913 64644 0 C A consensus_score=250.5 frequency=1 major_base=A major_cov=60/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/20 RA 437 . NC_000913 64665 0 T C bias_e_value=2987580 bias_p_value=0.643647 consensus_score=281.7 fisher_strand_p_value=0.285714 frequency=1 ks_quality_p_value=1 major_base=C major_cov=60/23 major_frequency=9.881e-01 minor_base=T minor_cov=0/1 new_cov=60/23 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=60/24 RA 438 . NC_000913 64677 0 A T bias_e_value=2936930 bias_p_value=0.632735 consensus_score=298.7 fisher_strand_p_value=0.277108 frequency=1 ks_quality_p_value=1 major_base=T major_cov=60/22 major_frequency=9.880e-01 minor_base=G minor_cov=0/1 new_cov=60/22 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/23 RA 439 . NC_000913 64680 0 G C bias_e_value=4641650 bias_p_value=1 consensus_score=277.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=59/23 major_frequency=9.880e-01 minor_base=A minor_cov=1/0 new_cov=59/23 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/23 RA 440 . NC_000913 64686 0 T G consensus_score=282.3 frequency=1 major_base=G major_cov=60/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/23 RA 441 . NC_000913 64692 0 C T bias_e_value=3069020 bias_p_value=0.661192 consensus_score=323.8 fisher_strand_p_value=0.3 frequency=1 ks_quality_p_value=1 major_base=T major_cov=63/26 major_frequency=9.889e-01 minor_base=G minor_cov=0/1 new_cov=63/26 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=63/27 RA 442 . NC_000913 64713 0 T C bias_e_value=3062590 bias_p_value=0.659806 consensus_score=298.9 fisher_strand_p_value=0.298851 frequency=1 ks_quality_p_value=1 major_base=C major_cov=61/25 major_frequency=9.885e-01 minor_base=T minor_cov=0/1 new_cov=61/25 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=61/26 RA 443 . NC_000913 64716 0 C T bias_e_value=3062590 bias_p_value=0.659806 consensus_score=316.7 fisher_strand_p_value=0.298851 frequency=1 ks_quality_p_value=1 major_base=T major_cov=61/25 major_frequency=9.885e-01 minor_base=G minor_cov=0/1 new_cov=61/25 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/26 RA 444 . NC_000913 64749 0 G A bias_e_value=4641640 bias_p_value=0.999997 consensus_score=280.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997755 major_base=A major_cov=58/31 major_frequency=9.889e-01 minor_base=C minor_cov=1/0 new_cov=58/31 polymorphism_frequency=9.889e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/0 total_cov=59/31 RA 445 . NC_000913 64755 0 G A consensus_score=280.3 frequency=1 major_base=A major_cov=58/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/31 RA 446 . NC_000913 64794 0 T C consensus_score=343.4 frequency=1 major_base=C major_cov=56/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/38 RA 447 . NC_000913 64883 0 G A bias_e_value=3783940 bias_p_value=0.815214 consensus_score=301.2 fisher_strand_p_value=0.457447 frequency=1 ks_quality_p_value=1 major_base=A major_cov=42/51 major_frequency=9.894e-01 minor_base=C minor_cov=1/0 new_cov=42/51 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/51 RA 448 . NC_000913 64896 0 A G consensus_score=323.2 frequency=1 major_base=G major_cov=43/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/49 RA 449 . NC_000913 65028 0 G A consensus_score=305.0 frequency=1 major_base=A major_cov=21/65 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/65 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/65 RA 450 . NC_000913 65031 0 A G consensus_score=300.4 frequency=1 major_base=G major_cov=21/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/64 RA 451 . NC_000913 65043 0 A C consensus_score=312.3 frequency=1 major_base=C major_cov=22/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/63 RA 452 . NC_000913 65046 0 A C consensus_score=314.9 frequency=1 major_base=C major_cov=22/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/63 RA 453 . NC_000913 65057 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=276.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=24/58 major_frequency=9.880e-01 minor_base=G minor_cov=0/1 new_cov=24/58 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=24/59 RA 454 . NC_000913 65169 0 C T consensus_score=245.2 frequency=1 major_base=T major_cov=24/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/48 RA 455 . NC_000913 65171 0 A G consensus_score=260.1 frequency=1 major_base=G major_cov=24/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/48 RA 456 . NC_000913 65202 0 G A consensus_score=264.6 frequency=1 major_base=A major_cov=26/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/48 RA 457 . NC_000913 65208 0 A G consensus_score=267.5 frequency=1 major_base=G major_cov=26/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/47 RA 458 . NC_000913 65213 0 A C consensus_score=264.0 frequency=1 major_base=C major_cov=26/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/46 RA 459 . NC_000913 65232 0 C T bias_e_value=3545560 bias_p_value=0.763857 consensus_score=243.8 fisher_strand_p_value=0.39726 frequency=1 ks_quality_p_value=0.99962 major_base=T major_cov=28/44 major_frequency=9.863e-01 minor_base=C minor_cov=1/0 new_cov=28/44 polymorphism_frequency=9.863e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=1/0 total_cov=29/44 RA 460 . NC_000913 65316 0 T A consensus_score=204.1 frequency=1 major_base=A major_cov=36/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/23 RA 461 . NC_000913 65381 0 T C bias_e_value=4641640 bias_p_value=0.999997 consensus_score=203.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997743 major_base=C major_cov=35/24 major_frequency=9.833e-01 minor_base=T minor_cov=1/0 new_cov=35/24 polymorphism_frequency=9.833e-01 polymorphism_score=-5.4 prediction=consensus ref_cov=1/0 total_cov=36/24 RA 462 . NC_000913 65454 0 A G consensus_score=210.5 frequency=1 major_base=G major_cov=42/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/17 RA 463 . NC_000913 65594 0 A C consensus_score=224.7 frequency=1 major_base=C major_cov=40/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/25 RA 464 . NC_000913 65785 0 A T consensus_score=215.6 frequency=1 major_base=T major_cov=28/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/35 RA 465 . NC_000913 65788 0 A T consensus_score=207.3 frequency=1 major_base=T major_cov=28/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/35 RA 466 . NC_000913 65811 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=236.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/38 major_frequency=9.859e-01 minor_base=C minor_cov=0/1 new_cov=32/38 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/39 RA 467 . NC_000913 65905 0 C T consensus_score=278.0 frequency=1 major_base=T major_cov=40/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/38 RA 468 . NC_000913 66024 0 C . bias_e_value=4641650 bias_p_value=1 consensus_score=416.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=. major_cov=44/44 major_frequency=9.888e-01 minor_base=C minor_cov=1/0 new_cov=44/44 polymorphism_frequency=9.888e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=1/0 total_cov=45/44 RA 469 . NC_000913 66032 0 C T consensus_score=330.1 frequency=1 major_base=T major_cov=49/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/44 RA 470 . NC_000913 66041 0 G A consensus_score=288.6 frequency=1 major_base=A major_cov=48/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/43 RA 471 . NC_000913 66053 0 A G consensus_score=317.3 frequency=1 major_base=G major_cov=51/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/37 RA 472 . NC_000913 66092 0 A G bias_e_value=3712170 bias_p_value=0.799752 consensus_score=306.9 fisher_strand_p_value=0.438202 frequency=1 ks_quality_p_value=1 major_base=G major_cov=50/38 major_frequency=9.888e-01 minor_base=T minor_cov=0/1 new_cov=50/38 polymorphism_frequency=9.888e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/39 RA 473 . NC_000913 66134 0 G A consensus_score=282.7 frequency=1 major_base=A major_cov=50/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/38 RA 474 . NC_000913 66227 0 A G consensus_score=278.7 frequency=1 major_base=G major_cov=43/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/35 RA 475 . NC_000913 66245 0 G A consensus_score=263.2 frequency=1 major_base=A major_cov=45/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/33 RA 476 . NC_000913 66263 0 C T consensus_score=277.3 frequency=1 major_base=T major_cov=44/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/34 RA 477 . NC_000913 66266 0 A G consensus_score=275.7 frequency=1 major_base=G major_cov=44/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/34 RA 478 . NC_000913 66287 0 G C bias_e_value=1914310 bias_p_value=0.412421 consensus_score=229.0 fisher_strand_p_value=0.138562 frequency=1 ks_quality_p_value=1 major_base=C major_cov=39/30 major_frequency=9.452e-01 minor_base=A minor_cov=4/0 new_cov=39/30 polymorphism_frequency=9.452e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/30 RA 479 . NC_000913 66308 0 C T consensus_score=245.1 frequency=1 major_base=T major_cov=41/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/33 RA 480 . NC_000913 66323 0 G A consensus_score=272.8 frequency=1 major_base=A major_cov=37/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/43 RA 481 . NC_000913 66343 0 T C bias_e_value=3709480 bias_p_value=0.799172 consensus_score=285.3 fisher_strand_p_value=0.4375 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/45 major_frequency=9.875e-01 minor_base=A minor_cov=1/0 new_cov=34/45 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/45 RA 482 . NC_000913 66403 0 C T consensus_score=247.0 frequency=1 major_base=T major_cov=33/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/42 RA 483 . NC_000913 66494 0 G A consensus_score=225.9 frequency=1 major_base=A major_cov=29/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/43 RA 484 . NC_000913 66518 0 T C consensus_score=273.2 frequency=1 major_base=C major_cov=29/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/46 RA 485 . NC_000913 66686 0 C G bias_e_value=3620790 bias_p_value=0.780066 consensus_score=152.4 fisher_strand_p_value=0.415094 frequency=1 ks_quality_p_value=1 major_base=G major_cov=21/31 major_frequency=9.811e-01 minor_base=A minor_cov=1/0 new_cov=21/31 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/31 RA 486 . NC_000913 66688 0 G A bias_e_value=2167760 bias_p_value=0.467024 consensus_score=140.5 fisher_strand_p_value=0.167634 frequency=1 ks_quality_p_value=1 major_base=A major_cov=20/31 major_frequency=9.623e-01 minor_base=C minor_cov=2/0 new_cov=20/31 polymorphism_frequency=9.623e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/31 RA 487 . NC_000913 66784 0 A T bias_e_value=3706100 bias_p_value=0.798443 consensus_score=219.9 fisher_strand_p_value=0.43662 frequency=1 ks_quality_p_value=1 major_base=T major_cov=40/30 major_frequency=9.859e-01 minor_base=C minor_cov=0/1 new_cov=40/30 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/31 RA 488 . NC_000913 66819 0 T C consensus_score=214.2 frequency=1 major_base=C major_cov=40/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/27 RA 489 . NC_000913 66823 0 G T consensus_score=211.2 frequency=1 major_base=T major_cov=40/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/27 RA 490 . NC_000913 66830 0 G A consensus_score=212.7 frequency=1 major_base=A major_cov=42/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/27 RA 491 . NC_000913 66847 0 C T consensus_score=207.5 frequency=1 major_base=T major_cov=42/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/24 RA 492 . NC_000913 66898 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=217.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=40/25 major_frequency=9.848e-01 minor_base=T minor_cov=1/0 new_cov=40/25 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/25 RA 493 . NC_000913 66901 0 G A consensus_score=196.5 frequency=1 major_base=A major_cov=41/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/25 RA 494 . NC_000913 66946 0 T C consensus_score=238.3 frequency=1 major_base=C major_cov=40/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/28 RA 495 . NC_000913 66970 0 T C consensus_score=245.6 frequency=1 major_base=C major_cov=44/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/27 RA 496 . NC_000913 67111 0 G A consensus_score=263.7 frequency=1 major_base=A major_cov=37/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/44 RA 497 . NC_000913 67123 0 T C bias_e_value=4636480 bias_p_value=0.998886 consensus_score=272.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.953179 major_base=C major_cov=35/42 major_frequency=9.872e-01 minor_base=A minor_cov=0/1 new_cov=35/42 polymorphism_frequency=9.872e-01 polymorphism_score=-5.1 prediction=consensus ref_cov=0/0 total_cov=35/43 RA 498 . NC_000913 67152 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=257.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=35/44 major_frequency=9.875e-01 minor_base=T minor_cov=0/1 new_cov=35/44 polymorphism_frequency=9.875e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/45 RA 499 . NC_000913 67171 0 G A consensus_score=278.0 frequency=1 major_base=A major_cov=36/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/48 RA 500 . NC_000913 67195 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=295.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/51 major_frequency=9.886e-01 minor_base=G minor_cov=0/1 new_cov=36/51 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=36/52 RA 501 . NC_000913 67259 0 G A bias_e_value=3536760 bias_p_value=0.761961 consensus_score=257.3 fisher_strand_p_value=0.395062 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/49 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=31/49 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/49 RA 502 . NC_000913 67264 0 G A bias_e_value=3532030 bias_p_value=0.760942 consensus_score=268.0 fisher_strand_p_value=0.395062 frequency=1 ks_quality_p_value=0.997226 major_base=A major_cov=31/49 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=31/49 polymorphism_frequency=9.877e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/0 total_cov=32/49 RA 503 . NC_000913 67405 0 A G consensus_score=292.6 frequency=1 major_base=G major_cov=38/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/41 RA 504 . NC_000913 67471 0 A T consensus_score=276.7 frequency=1 major_base=T major_cov=42/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/39 RA 505 . NC_000913 67596 0 T C consensus_score=245.9 frequency=1 major_base=C major_cov=38/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 506 . NC_000913 67612 0 G T consensus_score=244.5 frequency=1 major_base=T major_cov=37/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/34 RA 507 . NC_000913 67759 0 G A consensus_score=193.0 frequency=1 major_base=A major_cov=14/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=14/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=14/38 RA 508 . NC_000913 67798 0 T A consensus_score=180.4 frequency=1 major_base=A major_cov=5/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=5/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=5/44 RA 509 . NC_000913 67834 0 G A consensus_score=209.1 frequency=1 major_base=A major_cov=3/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=3/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=3/54 RA 510 . NC_000913 67900 0 C G consensus_score=185.8 frequency=1 major_base=G major_cov=5/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=5/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=5/46 RA 511 . NC_000913 68236 0 G A consensus_score=37.6 frequency=1 major_base=A major_cov=9/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=9/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=9/6 RA 512 . NC_000913 68468 0 C T consensus_score=158.0 frequency=1 major_base=T major_cov=31/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/12 RA 513 . NC_000913 68476 0 A G consensus_score=159.9 frequency=1 major_base=G major_cov=31/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/14 RA 514 . NC_000913 68519 0 A G consensus_score=161.4 frequency=1 major_base=G major_cov=31/15 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/15 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/15 RA 515 . NC_000913 68678 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=214.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/19 major_frequency=9.841e-01 minor_base=T minor_cov=1/0 new_cov=43/19 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=44/19 RA 516 . NC_000913 68693 0 A G consensus_score=237.9 frequency=1 major_base=G major_cov=46/20 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/20 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/20 RA 517 . NC_000913 68837 0 C T consensus_score=273.7 frequency=1 major_base=T major_cov=49/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/32 RA 518 . NC_000913 68840 0 T C consensus_score=292.3 frequency=1 major_base=C major_cov=49/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/32 RA 519 . NC_000913 68842 0 T A consensus_score=262.5 frequency=1 major_base=A major_cov=49/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/32 RA 520 . NC_000913 68846 0 G A consensus_score=263.0 frequency=1 major_base=A major_cov=49/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/32 RA 521 . NC_000913 68849 0 G A bias_e_value=4641100 bias_p_value=0.999881 consensus_score=246.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.984613 major_base=A major_cov=48/31 major_frequency=9.875e-01 minor_base=C minor_cov=1/0 new_cov=48/31 polymorphism_frequency=9.875e-01 polymorphism_score=-6.5 prediction=consensus ref_cov=0/1 total_cov=49/32 RA 522 . NC_000913 68956 0 T C consensus_score=285.3 frequency=1 major_base=C major_cov=37/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/42 RA 523 . NC_000913 69001 0 C T consensus_score=270.1 frequency=1 major_base=T major_cov=34/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/45 RA 524 . NC_000913 69014 0 A G consensus_score=285.8 frequency=1 major_base=G major_cov=31/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/47 RA 525 . NC_000913 69323 0 A G consensus_score=257.2 frequency=1 major_base=G major_cov=36/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/35 RA 526 . NC_000913 69400 0 G A consensus_score=260.0 frequency=1 major_base=A major_cov=35/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/41 RA 527 . NC_000913 69605 0 A G consensus_score=232.1 frequency=1 major_base=G major_cov=29/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/35 RA 528 . NC_000913 69611 0 G A consensus_score=227.7 frequency=1 major_base=A major_cov=29/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/35 RA 529 . NC_000913 69629 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=207.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=26/34 major_frequency=9.836e-01 minor_base=C minor_cov=0/1 new_cov=26/34 polymorphism_frequency=9.836e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/35 RA 530 . NC_000913 69665 0 C . consensus_score=264.2 frequency=1 major_base=. major_cov=25/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/32 RA 531 . NC_000913 69672 1 . T consensus_score=188.1 frequency=1 major_base=T major_cov=25/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/36 RA 532 . NC_000913 69752 0 T A consensus_score=224.6 frequency=1 major_base=A major_cov=25/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/37 RA 533 . NC_000913 69935 0 C T consensus_score=260.0 frequency=1 major_base=T major_cov=38/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/36 RA 534 . NC_000913 69981 0 G C consensus_score=317.6 frequency=1 major_base=C major_cov=56/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/33 RA 535 . NC_000913 69983 0 A G consensus_score=305.2 frequency=1 major_base=G major_cov=56/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/33 RA 536 . NC_000913 70289 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=389.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/61 major_frequency=9.910e-01 minor_base=G minor_cov=0/1 new_cov=49/61 polymorphism_frequency=9.910e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/62 RA 537 . NC_000913 70371 0 T C consensus_score=427.2 frequency=1 major_base=C major_cov=48/71 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=48/71 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/71 RA 538 . NC_000913 70434 0 C T consensus_score=396.5 frequency=1 major_base=T major_cov=47/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/62 RA 539 . NC_000913 70581 0 C T consensus_score=312.7 frequency=1 major_base=T major_cov=36/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/52 RA 540 . NC_000913 70740 0 T G consensus_score=256.4 frequency=1 major_base=G major_cov=39/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/32 RA 541 . NC_000913 71079 0 C T bias_e_value=3810320 bias_p_value=0.820897 consensus_score=243.3 fisher_strand_p_value=0.464789 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/38 major_frequency=9.859e-01 minor_base=G minor_cov=1/0 new_cov=32/38 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/38 RA 542 . NC_000913 71082 0 T C consensus_score=256.1 frequency=1 major_base=C major_cov=33/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/38 RA 543 . NC_000913 71085 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=248.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=33/37 major_frequency=9.859e-01 minor_base=T minor_cov=0/1 new_cov=33/37 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=33/38 RA 544 . NC_000913 71109 0 T C consensus_score=269.9 frequency=1 major_base=C major_cov=34/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/42 RA 545 . NC_000913 71175 0 A G consensus_score=299.5 frequency=1 major_base=G major_cov=36/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/48 RA 546 . NC_000913 71214 0 T C consensus_score=319.1 frequency=1 major_base=C major_cov=37/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/53 RA 547 . NC_000913 71386 0 C T consensus_score=258.5 frequency=1 major_base=T major_cov=41/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/36 RA 548 . NC_000913 71543 0 A G consensus_score=315.5 frequency=1 major_base=G major_cov=57/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/30 RA 549 . NC_000913 71545 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=307.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=56/30 major_frequency=9.885e-01 minor_base=G minor_cov=1/0 new_cov=56/30 polymorphism_frequency=9.885e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=0/0 total_cov=57/30 RA 550 . NC_000913 71548 0 C T bias_e_value=1704950 bias_p_value=0.367316 consensus_score=283.0 fisher_strand_p_value=0.119015 frequency=1 ks_quality_p_value=0.980264 major_base=T major_cov=56/28 major_frequency=9.767e-01 minor_base=. minor_cov=0/2 new_cov=56/28 polymorphism_frequency=9.767e-01 polymorphism_score=1.2 prediction=consensus ref_cov=0/0 total_cov=57/30 RA 551 . NC_000913 71551 0 C T bias_e_value=1728270 bias_p_value=0.372339 consensus_score=285.5 fisher_strand_p_value=0.119015 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/28 major_frequency=9.767e-01 minor_base=G minor_cov=0/2 new_cov=56/28 polymorphism_frequency=9.767e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=1/0 total_cov=57/30 RA 552 . NC_000913 71552 0 T C bias_e_value=2940470 bias_p_value=0.633495 consensus_score=294.8 fisher_strand_p_value=0.277702 frequency=1 ks_quality_p_value=1 major_base=C major_cov=55/28 major_frequency=9.651e-01 minor_base=T minor_cov=1/2 new_cov=55/28 polymorphism_frequency=9.651e-01 polymorphism_score=-0.6 prediction=consensus ref_cov=1/2 total_cov=57/30 RA 553 . NC_000913 71555 0 A C consensus_score=313.1 frequency=1 major_base=C major_cov=56/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/30 RA 554 . NC_000913 71569 0 T C consensus_score=329.9 frequency=1 major_base=C major_cov=61/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/33 RA 555 . NC_000913 71572 0 T C consensus_score=326.5 frequency=1 major_base=C major_cov=61/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/33 RA 556 . NC_000913 71584 0 T C consensus_score=347.0 frequency=1 major_base=C major_cov=62/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=62/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/34 RA 557 . NC_000913 71639 0 C T bias_e_value=3857330 bias_p_value=0.831026 consensus_score=288.5 fisher_strand_p_value=0.478261 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/43 major_frequency=9.891e-01 minor_base=G minor_cov=0/1 new_cov=48/43 polymorphism_frequency=9.891e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/44 RA 558 . NC_000913 71644 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=345.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=49/44 major_frequency=9.894e-01 minor_base=A minor_cov=1/0 new_cov=49/44 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/44 RA 559 . NC_000913 71701 0 T C bias_e_value=3955020 bias_p_value=0.852071 consensus_score=350.2 fisher_strand_p_value=0.508023 frequency=1 ks_quality_p_value=1 major_base=C major_cov=60/45 major_frequency=9.813e-01 minor_base=A minor_cov=2/0 new_cov=60/45 polymorphism_frequency=9.813e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/45 RA 560 . NC_000913 71764 0 T A consensus_score=338.9 frequency=1 major_base=A major_cov=54/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/48 RA 561 . NC_000913 71770 0 T C bias_e_value=3846970 bias_p_value=0.828793 consensus_score=366.4 fisher_strand_p_value=0.475248 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/47 major_frequency=9.901e-01 minor_base=T minor_cov=0/1 new_cov=53/47 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=53/48 RA 562 . NC_000913 71806 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=332.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/47 major_frequency=9.896e-01 minor_base=G minor_cov=0/1 new_cov=48/47 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=48/48 RA 563 . NC_000913 71824 0 A T bias_e_value=4641650 bias_p_value=1 consensus_score=342.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=47/50 major_frequency=9.898e-01 minor_base=C minor_cov=0/1 new_cov=47/50 polymorphism_frequency=9.898e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/51 RA 564 . NC_000913 71857 0 T A consensus_score=336.4 frequency=1 major_base=A major_cov=47/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/53 RA 565 . NC_000913 71875 0 T C bias_e_value=3787150 bias_p_value=0.815906 consensus_score=334.4 fisher_strand_p_value=0.458333 frequency=1 ks_quality_p_value=1 major_base=C major_cov=43/52 major_frequency=9.896e-01 minor_base=A minor_cov=1/0 new_cov=43/52 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/52 RA 566 . NC_000913 71899 0 A G consensus_score=321.6 frequency=1 major_base=G major_cov=42/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/49 RA 567 . NC_000913 71902 0 A G bias_e_value=3918780 bias_p_value=0.844263 consensus_score=307.2 fisher_strand_p_value=0.496683 frequency=1 ks_quality_p_value=1 major_base=G major_cov=44/48 major_frequency=9.787e-01 minor_base=T minor_cov=0/2 new_cov=44/48 polymorphism_frequency=9.787e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/50 RA 568 . NC_000913 71908 0 G A consensus_score=312.1 frequency=1 major_base=A major_cov=44/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/53 RA 569 . NC_000913 71912 0 T G consensus_score=331.9 frequency=1 major_base=G major_cov=44/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/49 RA 570 . NC_000913 71962 0 G A consensus_score=291.6 frequency=1 major_base=A major_cov=35/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/48 RA 571 . NC_000913 71965 0 T C bias_e_value=3647460 bias_p_value=0.78581 consensus_score=287.0 fisher_strand_p_value=0.421687 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/48 major_frequency=9.880e-01 minor_base=T minor_cov=1/0 new_cov=34/48 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=35/48 RA 572 . NC_000913 71968 0 C T consensus_score=277.7 frequency=1 major_base=T major_cov=34/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/48 RA 573 . NC_000913 71974 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=273.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=32/48 major_frequency=9.877e-01 minor_base=G minor_cov=0/1 new_cov=32/48 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/49 RA 574 . NC_000913 71989 0 C G consensus_score=265.5 frequency=1 major_base=G major_cov=28/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/51 RA 575 . NC_000913 71995 0 T C consensus_score=277.6 frequency=1 major_base=C major_cov=28/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/52 RA 576 . NC_000913 72117 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=296.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=23/59 major_frequency=9.880e-01 minor_base=T minor_cov=0/1 new_cov=23/59 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/60 RA 577 . NC_000913 72121 0 A T consensus_score=270.6 frequency=1 major_base=T major_cov=21/60 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=21/60 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=21/60 RA 578 . NC_000913 72151 0 T G consensus_score=282.8 frequency=1 major_base=G major_cov=22/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=22/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=22/56 RA 579 . NC_000913 72152 0 G A consensus_score=276.7 frequency=1 major_base=A major_cov=24/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/56 RA 580 . NC_000913 72183 0 A G consensus_score=265.3 frequency=1 major_base=G major_cov=24/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/50 RA 581 . NC_000913 72184 0 C T consensus_score=248.1 frequency=1 major_base=T major_cov=24/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/50 RA 582 . NC_000913 72202 0 C T consensus_score=238.2 frequency=1 major_base=T major_cov=26/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/43 RA 583 . NC_000913 72217 0 C T consensus_score=231.8 frequency=1 major_base=T major_cov=27/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/43 RA 584 . NC_000913 72253 0 C T bias_e_value=4641640 bias_p_value=0.999998 consensus_score=199.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997817 major_base=T major_cov=27/33 major_frequency=9.836e-01 minor_base=G minor_cov=0/1 new_cov=27/33 polymorphism_frequency=9.836e-01 polymorphism_score=-6.0 prediction=consensus ref_cov=0/0 total_cov=27/34 RA 585 . NC_000913 72290 0 A T bias_e_value=3904480 bias_p_value=0.841182 consensus_score=213.6 fisher_strand_p_value=0.492308 frequency=1 ks_quality_p_value=1 major_base=T major_cov=32/31 major_frequency=9.692e-01 minor_base=C minor_cov=0/2 new_cov=32/31 polymorphism_frequency=9.692e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/33 RA 586 . NC_000913 72322 0 T C consensus_score=220.0 frequency=1 major_base=C major_cov=33/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/27 RA 587 . NC_000913 72325 0 T C consensus_score=217.6 frequency=1 major_base=C major_cov=33/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/27 RA 588 . NC_000913 72349 0 C G consensus_score=221.8 frequency=1 major_base=G major_cov=35/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/27 RA 589 . NC_000913 72361 0 G A consensus_score=221.2 frequency=1 major_base=A major_cov=47/17 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/17 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/17 RA 590 . NC_000913 72367 0 C T consensus_score=237.3 frequency=1 major_base=T major_cov=50/19 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/19 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/19 RA 591 . NC_000913 72381 0 G A consensus_score=226.8 frequency=1 major_base=A major_cov=56/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=56/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/12 RA 592 . NC_000913 72423 0 A G consensus_score=233.6 frequency=1 major_base=G major_cov=52/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/12 RA 593 . NC_000913 72493 0 T C consensus_score=279.9 frequency=1 major_base=C major_cov=53/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/26 RA 594 . NC_000913 72517 0 T G bias_e_value=3395330 bias_p_value=0.731491 consensus_score=269.6 fisher_strand_p_value=0.363636 frequency=1 ks_quality_p_value=1 major_base=G major_cov=49/27 major_frequency=9.870e-01 minor_base=T minor_cov=0/1 new_cov=49/27 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/28 RA 595 . NC_000913 72547 0 C A consensus_score=271.5 frequency=1 major_base=A major_cov=50/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/32 RA 596 . NC_000913 72605 0 C T consensus_score=259.5 frequency=1 major_base=T major_cov=40/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/37 RA 597 . NC_000913 72614 0 A G consensus_score=282.2 frequency=1 major_base=G major_cov=41/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/37 RA 598 . NC_000913 72661 0 T C consensus_score=216.0 frequency=1 major_base=C major_cov=23/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/36 RA 599 . NC_000913 72676 0 G A consensus_score=256.4 frequency=1 major_base=A major_cov=29/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/44 RA 600 . NC_000913 72691 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=257.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/47 major_frequency=9.870e-01 minor_base=G minor_cov=0/1 new_cov=29/47 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/48 RA 601 . NC_000913 72731 0 A G bias_e_value=4038840 bias_p_value=0.87013 consensus_score=252.6 fisher_strand_p_value=0.535789 frequency=1 ks_quality_p_value=1 major_base=G major_cov=27/47 major_frequency=9.737e-01 minor_base=T minor_cov=0/2 new_cov=27/47 polymorphism_frequency=9.737e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/49 RA 602 . NC_000913 72733 0 A C consensus_score=268.7 frequency=1 major_base=C major_cov=27/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/50 RA 603 . NC_000913 72736 0 T G consensus_score=276.3 frequency=1 major_base=G major_cov=27/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/50 RA 604 . NC_000913 72745 0 T A bias_e_value=4641650 bias_p_value=1 consensus_score=299.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/49 major_frequency=9.880e-01 minor_base=G minor_cov=0/1 new_cov=33/49 polymorphism_frequency=9.880e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/50 RA 605 . NC_000913 72751 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=298.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=33/51 major_frequency=9.882e-01 minor_base=T minor_cov=0/1 new_cov=33/51 polymorphism_frequency=9.882e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/52 RA 606 . NC_000913 72799 0 A G consensus_score=283.1 frequency=1 major_base=G major_cov=32/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/47 RA 607 . NC_000913 72820 0 C T consensus_score=255.5 frequency=1 major_base=T major_cov=34/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/42 RA 608 . NC_000913 72862 0 C T consensus_score=269.0 frequency=1 major_base=T major_cov=38/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/41 RA 609 . NC_000913 72892 0 G T bias_e_value=3848220 bias_p_value=0.829063 consensus_score=279.7 fisher_strand_p_value=0.47561 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/38 major_frequency=9.878e-01 minor_base=G minor_cov=0/1 new_cov=43/38 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=43/39 RA 610 . NC_000913 72928 0 T C consensus_score=350.8 frequency=1 major_base=C major_cov=49/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/48 RA 611 . NC_000913 72974 0 C T consensus_score=299.4 frequency=1 major_base=T major_cov=46/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/42 RA 612 . NC_000913 73001 0 A G consensus_score=316.4 frequency=1 major_base=G major_cov=47/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/42 RA 613 . NC_000913 73115 0 T G bias_e_value=4641650 bias_p_value=1 consensus_score=269.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=38/38 major_frequency=9.870e-01 minor_base=T minor_cov=0/1 new_cov=38/38 polymorphism_frequency=9.870e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=38/39 RA 614 . NC_000913 73121 0 G A consensus_score=272.6 frequency=1 major_base=A major_cov=37/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/42 RA 615 . NC_000913 73163 0 C G consensus_score=267.8 frequency=1 major_base=G major_cov=36/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/39 RA 616 . NC_000913 73178 0 T C bias_e_value=3703310 bias_p_value=0.797844 consensus_score=266.6 fisher_strand_p_value=0.435897 frequency=1 ks_quality_p_value=1 major_base=C major_cov=33/44 major_frequency=9.872e-01 minor_base=T minor_cov=1/0 new_cov=33/44 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=34/44 RA 617 . NC_000913 73193 0 C G consensus_score=301.8 frequency=1 major_base=G major_cov=37/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/47 RA 618 . NC_000913 73208 0 T C bias_e_value=3515850 bias_p_value=0.757457 consensus_score=289.6 fisher_strand_p_value=0.390244 frequency=1 ks_quality_p_value=1 major_base=C major_cov=31/50 major_frequency=9.878e-01 minor_base=A minor_cov=1/0 new_cov=31/50 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/50 RA 619 . NC_000913 73214 0 G A consensus_score=284.0 frequency=1 major_base=A major_cov=32/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/48 RA 620 . NC_000913 73253 0 C T bias_e_value=3503760 bias_p_value=0.754852 consensus_score=257.4 fisher_strand_p_value=0.38961 frequency=1 ks_quality_p_value=0.994547 major_base=T major_cov=29/47 major_frequency=9.870e-01 minor_base=C minor_cov=1/0 new_cov=29/47 polymorphism_frequency=9.870e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=1/0 total_cov=30/47 RA 621 . NC_000913 73319 0 T C bias_e_value=3978350 bias_p_value=0.857097 consensus_score=235.3 fisher_strand_p_value=0.517483 frequency=1 ks_quality_p_value=0.996219 major_base=C major_cov=19/45 major_frequency=9.697e-01 minor_base=G minor_cov=1/1 new_cov=19/45 polymorphism_frequency=9.697e-01 polymorphism_score=-1.6 prediction=consensus ref_cov=0/0 total_cov=20/46 RA 622 . NC_000913 73328 0 G A consensus_score=217.0 frequency=1 major_base=A major_cov=20/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/44 RA 623 . NC_000913 73331 0 A G consensus_score=235.0 frequency=1 major_base=G major_cov=20/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/44 RA 624 . NC_000913 73413 0 A G consensus_score=198.9 frequency=1 major_base=G major_cov=26/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/31 RA 625 . NC_000913 73445 0 C A consensus_score=209.6 frequency=1 major_base=A major_cov=26/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/36 RA 626 . NC_000913 73582 0 C G consensus_score=198.8 frequency=1 major_base=G major_cov=31/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/25 RA 627 . NC_000913 73604 0 T C consensus_score=199.0 frequency=1 major_base=C major_cov=31/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/24 RA 628 . NC_000913 73712 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=244.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/31 major_frequency=9.853e-01 minor_base=C minor_cov=1/0 new_cov=36/31 polymorphism_frequency=9.853e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/31 RA 629 . NC_000913 73744 0 A G consensus_score=242.8 frequency=1 major_base=G major_cov=39/28 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/28 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/28 RA 630 . NC_000913 73753 0 G A consensus_score=206.4 frequency=1 major_base=A major_cov=38/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/27 RA 631 . NC_000913 73763 0 G A consensus_score=210.5 frequency=1 major_base=A major_cov=38/25 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/25 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/25 RA 632 . NC_000913 73777 0 G T consensus_score=243.5 frequency=1 major_base=T major_cov=42/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/24 RA 633 . NC_000913 73790 0 T C consensus_score=233.3 frequency=1 major_base=C major_cov=41/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/24 RA 634 . NC_000913 73853 0 C T consensus_score=257.4 frequency=1 major_base=T major_cov=47/24 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/24 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/24 RA 635 . NC_000913 73868 0 C G consensus_score=268.5 frequency=1 major_base=G major_cov=49/27 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/27 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/27 RA 636 . NC_000913 73919 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=283.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=46/34 major_frequency=9.877e-01 minor_base=C minor_cov=1/0 new_cov=46/34 polymorphism_frequency=9.877e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=47/34 RA 637 . NC_000913 73984 0 T C consensus_score=245.2 frequency=1 major_base=C major_cov=38/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/33 RA 638 . NC_000913 73985 0 A G bias_e_value=3810320 bias_p_value=0.820897 consensus_score=254.2 fisher_strand_p_value=0.464789 frequency=1 ks_quality_p_value=1 major_base=G major_cov=38/32 major_frequency=9.859e-01 minor_base=A minor_cov=0/1 new_cov=38/32 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=38/33 RA 639 . NC_000913 74009 0 T C consensus_score=235.1 frequency=1 major_base=C major_cov=36/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/32 RA 640 . NC_000913 74015 0 C T bias_e_value=3830780 bias_p_value=0.825304 consensus_score=232.1 fisher_strand_p_value=0.470588 frequency=1 ks_quality_p_value=1 major_base=T major_cov=36/31 major_frequency=9.853e-01 minor_base=G minor_cov=0/1 new_cov=36/31 polymorphism_frequency=9.853e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/0 total_cov=36/32 RA 641 . NC_000913 74027 0 G A consensus_score=235.8 frequency=1 major_base=A major_cov=34/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/36 RA 642 . NC_000913 74069 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=228.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/41 major_frequency=9.861e-01 minor_base=G minor_cov=0/1 new_cov=30/41 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/42 RA 643 . NC_000913 74081 0 C T consensus_score=242.5 frequency=1 major_base=T major_cov=29/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/45 RA 644 . NC_000913 74084 0 A G consensus_score=258.1 frequency=1 major_base=G major_cov=29/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/45 RA 645 . NC_000913 74087 0 G C bias_e_value=3500310 bias_p_value=0.754109 consensus_score=244.6 fisher_strand_p_value=0.391892 frequency=1 ks_quality_p_value=0.98676 major_base=C major_cov=28/45 major_frequency=9.865e-01 minor_base=T minor_cov=1/0 new_cov=28/45 polymorphism_frequency=9.865e-01 polymorphism_score=-5.5 prediction=consensus ref_cov=0/0 total_cov=29/45 RA 646 . NC_000913 74204 0 G A consensus_score=284.3 frequency=1 major_base=A major_cov=30/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/50 RA 647 . NC_000913 74209 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=267.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=31/46 major_frequency=9.872e-01 minor_base=T minor_cov=0/1 new_cov=31/46 polymorphism_frequency=9.872e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/47 RA 648 . NC_000913 74222 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=230.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=28/45 major_frequency=9.865e-01 minor_base=G minor_cov=0/1 new_cov=28/45 polymorphism_frequency=9.865e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/46 RA 649 . NC_000913 74234 0 A G consensus_score=244.9 frequency=1 major_base=G major_cov=29/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/43 RA 650 . NC_000913 74308 0 T C consensus_score=291.6 frequency=1 major_base=C major_cov=36/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/44 RA 651 . NC_000913 74321 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=265.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=40/35 major_frequency=9.868e-01 minor_base=T minor_cov=1/0 new_cov=40/35 polymorphism_frequency=9.868e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=41/35 RA 652 . NC_000913 75707 0 C T bias_e_value=3918440 bias_p_value=0.844191 consensus_score=286.6 fisher_strand_p_value=0.49658 frequency=1 ks_quality_p_value=1 major_base=T major_cov=44/40 major_frequency=9.767e-01 minor_base=C minor_cov=2/0 new_cov=44/40 polymorphism_frequency=9.767e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=46/40 RA 653 . NC_000913 75752 0 C . bias_e_value=4150140 bias_p_value=0.894109 consensus_score=330.1 fisher_strand_p_value=0.579223 frequency=1 ks_quality_p_value=0.995565 major_base=. major_cov=41/31 major_frequency=9.600e-01 minor_base=G minor_cov=1/2 new_cov=41/31 polymorphism_frequency=9.600e-01 polymorphism_score=4.5 prediction=consensus ref_cov=0/0 total_cov=42/33 RA 654 . NC_000913 75753 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=244.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=41/32 major_frequency=9.733e-01 minor_base=A minor_cov=1/1 new_cov=41/32 polymorphism_frequency=9.733e-01 polymorphism_score=-4.2 prediction=consensus ref_cov=1/1 total_cov=42/33 RA 655 . NC_000913 75757 1 . G bias_e_value=4641650 bias_p_value=1 consensus_score=235.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=40/32 major_frequency=9.600e-01 minor_base=. minor_cov=2/1 new_cov=40/32 polymorphism_frequency=9.600e-01 polymorphism_score=2.0 prediction=consensus ref_cov=2/1 total_cov=42/33 RA 656 . NC_000913 75758 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=233.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=41/33 major_frequency=9.867e-01 minor_base=T minor_cov=1/0 new_cov=41/33 polymorphism_frequency=9.867e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=42/33 RA 657 . NC_000913 75767 0 C T consensus_score=270.2 frequency=1 major_base=T major_cov=42/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=42/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=42/33 RA 658 . NC_000913 75806 0 A G consensus_score=249.0 frequency=1 major_base=G major_cov=39/32 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/32 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/32 RA 659 . NC_000913 75812 0 C T consensus_score=267.6 frequency=1 major_base=T major_cov=38/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/37 RA 660 . NC_000913 75830 0 A G bias_e_value=4641220 bias_p_value=0.999907 consensus_score=257.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.986395 major_base=G major_cov=36/36 major_frequency=9.863e-01 minor_base=C minor_cov=0/1 new_cov=36/36 polymorphism_frequency=9.863e-01 polymorphism_score=-4.3 prediction=consensus ref_cov=0/0 total_cov=36/37 RA 661 . NC_000913 75833 0 A G consensus_score=258.1 frequency=1 major_base=G major_cov=36/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/37 RA 662 . NC_000913 75851 0 A G consensus_score=273.7 frequency=1 major_base=G major_cov=36/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/42 RA 663 . NC_000913 75854 0 G C consensus_score=273.7 frequency=1 major_base=C major_cov=36/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/42 RA 664 . NC_000913 75860 0 G A consensus_score=233.5 frequency=1 major_base=A major_cov=38/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/34 RA 665 . NC_000913 75863 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=253.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=37/34 major_frequency=9.861e-01 minor_base=T minor_cov=1/0 new_cov=37/34 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/34 RA 666 . NC_000913 75869 0 T G consensus_score=259.0 frequency=1 major_base=G major_cov=38/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/34 RA 667 . NC_000913 75875 0 T C bias_e_value=3912090 bias_p_value=0.842824 consensus_score=251.0 fisher_strand_p_value=0.494632 frequency=1 ks_quality_p_value=1 major_base=C major_cov=37/35 major_frequency=9.730e-01 minor_base=T minor_cov=2/0 new_cov=37/35 polymorphism_frequency=9.730e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=40/35 RA 668 . NC_000913 75881 0 T C consensus_score=262.3 frequency=1 major_base=C major_cov=39/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/35 RA 669 . NC_000913 75887 0 T C consensus_score=241.2 frequency=1 major_base=C major_cov=36/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/31 RA 670 . NC_000913 75890 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=237.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=35/31 major_frequency=9.851e-01 minor_base=A minor_cov=1/0 new_cov=35/31 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/31 RA 671 . NC_000913 75893 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=238.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=35/31 major_frequency=9.851e-01 minor_base=T minor_cov=1/0 new_cov=35/31 polymorphism_frequency=9.851e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=36/31 RA 672 . NC_000913 75899 0 A C consensus_score=227.7 frequency=1 major_base=C major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 673 . NC_000913 75901 0 C G consensus_score=221.1 frequency=1 major_base=G major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 674 . NC_000913 75902 0 A C consensus_score=227.6 frequency=1 major_base=C major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 675 . NC_000913 75905 0 G A consensus_score=206.1 frequency=1 major_base=A major_cov=34/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 676 . NC_000913 75908 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=206.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/29 major_frequency=9.841e-01 minor_base=C minor_cov=1/0 new_cov=33/29 polymorphism_frequency=9.841e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/29 RA 677 . NC_000913 75920 0 G C consensus_score=247.8 frequency=1 major_base=C major_cov=36/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/35 RA 678 . NC_000913 75938 0 T A consensus_score=245.2 frequency=1 major_base=A major_cov=37/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/37 RA 679 . NC_000913 75950 0 A G bias_e_value=2735230 bias_p_value=0.58928 consensus_score=262.5 fisher_strand_p_value=0.244778 frequency=1 ks_quality_p_value=1 major_base=G major_cov=37/40 major_frequency=9.625e-01 minor_base=A minor_cov=0/3 new_cov=37/40 polymorphism_frequency=9.625e-01 polymorphism_score=NA prediction=consensus ref_cov=0/3 total_cov=37/43 RA 680 . NC_000913 75953 0 T C consensus_score=288.8 frequency=1 major_base=C major_cov=37/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/43 RA 681 . NC_000913 75966 0 G T consensus_score=295.0 frequency=1 major_base=T major_cov=39/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/44 RA 682 . NC_000913 75967 0 T C consensus_score=289.9 frequency=1 major_base=C major_cov=39/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/44 RA 683 . NC_000913 75984 0 T C consensus_score=289.8 frequency=1 major_base=C major_cov=39/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/43 RA 684 . NC_000913 75985 0 C T consensus_score=290.0 frequency=1 major_base=T major_cov=39/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/43 RA 685 . NC_000913 76000 0 T C consensus_score=287.8 frequency=1 major_base=C major_cov=38/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/42 RA 686 . NC_000913 76082 0 T C consensus_score=337.0 frequency=1 major_base=C major_cov=40/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/53 RA 687 . NC_000913 76086 0 G A bias_e_value=3680820 bias_p_value=0.792998 consensus_score=309.3 fisher_strand_p_value=0.430108 frequency=1 ks_quality_p_value=1 major_base=A major_cov=39/53 major_frequency=9.892e-01 minor_base=G minor_cov=1/0 new_cov=39/53 polymorphism_frequency=9.892e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/53 RA 688 . NC_000913 76283 0 C T consensus_score=317.0 frequency=1 major_base=T major_cov=50/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/43 RA 689 . NC_000913 76334 0 G A bias_e_value=4641610 bias_p_value=0.999991 consensus_score=362.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995762 major_base=A major_cov=55/53 major_frequency=9.908e-01 minor_base=C minor_cov=1/0 new_cov=55/53 polymorphism_frequency=9.908e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=56/53 RA 690 . NC_000913 76358 0 C A bias_e_value=4641650 bias_p_value=1 consensus_score=348.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=61/43 major_frequency=9.905e-01 minor_base=G minor_cov=1/0 new_cov=61/43 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=62/43 RA 691 . NC_000913 76364 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=330.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=56/43 major_frequency=9.900e-01 minor_base=C minor_cov=1/0 new_cov=56/43 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/43 RA 692 . NC_000913 76478 0 A G consensus_score=349.9 frequency=1 major_base=G major_cov=50/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/48 RA 693 . NC_000913 76576 0 G A consensus_score=333.9 frequency=1 major_base=A major_cov=44/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/51 RA 694 . NC_000913 76700 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=321.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=37/52 major_frequency=9.889e-01 minor_base=T minor_cov=0/1 new_cov=37/52 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/53 RA 695 . NC_000913 76727 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=292.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=35/46 major_frequency=9.878e-01 minor_base=G minor_cov=0/1 new_cov=35/46 polymorphism_frequency=9.878e-01 polymorphism_score=-5.9 prediction=consensus ref_cov=0/1 total_cov=35/47 RA 696 . NC_000913 76775 0 A T consensus_score=248.2 frequency=1 major_base=T major_cov=26/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/47 RA 697 . NC_000913 76862 0 G A consensus_score=262.9 frequency=1 major_base=A major_cov=25/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=25/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=25/50 RA 698 . NC_000913 77021 0 C T consensus_score=232.0 frequency=1 major_base=T major_cov=29/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/37 RA 699 . NC_000913 77027 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=215.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=29/34 major_frequency=9.844e-01 minor_base=T minor_cov=0/1 new_cov=29/34 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/35 RA 700 . NC_000913 77117 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=185.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=37/22 major_frequency=9.833e-01 minor_base=C minor_cov=1/0 new_cov=37/22 polymorphism_frequency=9.833e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/22 RA 701 . NC_000913 77776 0 C A consensus_score=367.5 frequency=1 major_base=A major_cov=52/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/50 RA 702 . NC_000913 78406 0 A T consensus_score=325.9 frequency=1 major_base=T major_cov=43/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/51 RA 703 . NC_000913 78520 0 C A bias_e_value=4636720 bias_p_value=0.998937 consensus_score=298.1 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.954257 major_base=A major_cov=51/40 major_frequency=9.891e-01 minor_base=C minor_cov=1/0 new_cov=51/40 polymorphism_frequency=9.891e-01 polymorphism_score=-4.5 prediction=consensus ref_cov=1/0 total_cov=52/40 RA 704 . NC_000913 78524 0 A C bias_e_value=3944720 bias_p_value=0.849852 consensus_score=295.0 fisher_strand_p_value=0.504762 frequency=1 ks_quality_p_value=1 major_base=C major_cov=50/39 major_frequency=9.780e-01 minor_base=A minor_cov=2/0 new_cov=50/39 polymorphism_frequency=9.780e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=52/39 RA 705 . NC_000913 78533 0 A C bias_e_value=3717360 bias_p_value=0.80087 consensus_score=328.9 fisher_strand_p_value=0.43956 frequency=1 ks_quality_p_value=1 major_base=C major_cov=51/39 major_frequency=9.890e-01 minor_base=T minor_cov=0/1 new_cov=51/39 polymorphism_frequency=9.890e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=52/40 RA 706 . NC_000913 78761 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=276.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=47/34 major_frequency=9.878e-01 minor_base=C minor_cov=1/0 new_cov=47/34 polymorphism_frequency=9.878e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=48/34 RA 707 . NC_000913 79040 0 A G consensus_score=333.6 frequency=1 major_base=G major_cov=54/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/38 RA 708 . NC_000913 80529 0 C G bias_e_value=4641650 bias_p_value=1 consensus_score=209.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=20/38 major_frequency=9.831e-01 minor_base=T minor_cov=0/1 new_cov=20/38 polymorphism_frequency=9.831e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/39 RA 709 . NC_000913 82633 0 T G consensus_score=325.6 frequency=1 major_base=G major_cov=41/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/49 RA 710 . NC_000913 82894 0 T G consensus_score=295.7 frequency=1 major_base=G major_cov=32/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=32/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=32/51 RA 711 . NC_000913 82909 0 C T consensus_score=287.1 frequency=1 major_base=T major_cov=33/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=33/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=33/53 RA 712 . NC_000913 82933 0 G A bias_e_value=3578020 bias_p_value=0.770851 consensus_score=287.4 fisher_strand_p_value=0.404762 frequency=1 ks_quality_p_value=1 major_base=A major_cov=33/50 major_frequency=9.881e-01 minor_base=G minor_cov=1/0 new_cov=33/50 polymorphism_frequency=9.881e-01 polymorphism_score=-5.6 prediction=consensus ref_cov=1/0 total_cov=34/50 RA 713 . NC_000913 82957 0 C T consensus_score=272.7 frequency=1 major_base=T major_cov=28/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/53 RA 714 . NC_000913 83179 0 C T bias_e_value=3537990 bias_p_value=0.762227 consensus_score=314.8 fisher_strand_p_value=0.395349 frequency=1 ks_quality_p_value=1 major_base=T major_cov=52/33 major_frequency=9.884e-01 minor_base=G minor_cov=0/1 new_cov=52/33 polymorphism_frequency=9.884e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/34 RA 715 . NC_000913 83182 0 G A consensus_score=268.6 frequency=1 major_base=A major_cov=52/34 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/34 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/34 RA 716 . NC_000913 83296 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=358.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=59/40 major_frequency=9.900e-01 minor_base=A minor_cov=1/0 new_cov=59/40 polymorphism_frequency=9.900e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/40 RA 717 . NC_000913 83317 0 A G bias_e_value=3661820 bias_p_value=0.788904 consensus_score=299.8 fisher_strand_p_value=0.425287 frequency=1 ks_quality_p_value=1 major_base=G major_cov=50/36 major_frequency=9.885e-01 minor_base=A minor_cov=0/1 new_cov=50/36 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=50/37 RA 718 . NC_000913 83344 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=292.7 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/37 major_frequency=9.889e-01 minor_base=C minor_cov=1/0 new_cov=52/37 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/37 RA 719 . NC_000913 83359 0 C T consensus_score=318.1 frequency=1 major_base=T major_cov=55/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/36 RA 720 . NC_000913 83371 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=302.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=48/39 major_frequency=9.886e-01 minor_base=C minor_cov=1/0 new_cov=48/39 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/39 RA 721 . NC_000913 83383 0 G A bias_e_value=4641650 bias_p_value=1 consensus_score=300.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=A major_cov=44/42 major_frequency=9.885e-01 minor_base=C minor_cov=1/0 new_cov=44/42 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/42 RA 722 . NC_000913 84251 0 G T consensus_score=453.0 frequency=1 major_base=T major_cov=64/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=64/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=64/63 RA 723 . NC_000913 84267 0 G C consensus_score=465.3 frequency=1 major_base=C major_cov=58/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/69 RA 724 . NC_000913 84305 0 T C bias_e_value=3600610 bias_p_value=0.775717 consensus_score=408.8 fisher_strand_p_value=0.422414 frequency=1 ks_quality_p_value=0.971042 major_base=C major_cov=48/67 major_frequency=9.914e-01 minor_base=A minor_cov=1/0 new_cov=48/67 polymorphism_frequency=9.914e-01 polymorphism_score=-5.7 prediction=consensus ref_cov=0/0 total_cov=49/67 RA 725 . NC_000913 84306 0 C G bias_e_value=2857840 bias_p_value=0.615694 consensus_score=362.0 fisher_strand_p_value=0.264073 frequency=1 ks_quality_p_value=1 major_base=G major_cov=48/64 major_frequency=9.739e-01 minor_base=T minor_cov=0/3 new_cov=48/64 polymorphism_frequency=9.739e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/67 RA 726 . NC_000913 84415 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=350.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=48/48 major_frequency=9.897e-01 minor_base=T minor_cov=1/0 new_cov=48/48 polymorphism_frequency=9.897e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/49 RA 727 . NC_000913 85481 0 T C bias_e_value=1262490 bias_p_value=0.271993 consensus_score=413.3 fisher_strand_p_value=0.0760539 frequency=1 ks_quality_p_value=1 major_base=C major_cov=48/68 major_frequency=9.748e-01 minor_base=A minor_cov=3/0 new_cov=48/68 polymorphism_frequency=9.748e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=51/69 RA 728 . NC_000913 86241 0 A G consensus_score=357.6 frequency=1 major_base=G major_cov=57/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=57/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=57/44 RA 729 . NC_000913 86271 0 C T bias_e_value=3912070 bias_p_value=0.842818 consensus_score=324.8 fisher_strand_p_value=0.494624 frequency=1 ks_quality_p_value=1 major_base=T major_cov=45/47 major_frequency=9.892e-01 minor_base=C minor_cov=1/0 new_cov=45/47 polymorphism_frequency=9.892e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=46/47 RA 730 . NC_000913 86315 0 C T consensus_score=332.2 frequency=1 major_base=T major_cov=45/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/55 RA 731 . NC_000913 86345 0 G C consensus_score=334.0 frequency=1 major_base=C major_cov=38/57 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/57 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/57 RA 732 . NC_000913 86658 0 A G consensus_score=346.8 frequency=1 major_base=G major_cov=61/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/33 RA 733 . NC_000913 87410 0 C T consensus_score=322.7 frequency=1 major_base=T major_cov=50/43 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/43 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/43 RA 734 . NC_000913 89089 0 C A consensus_score=419.9 frequency=1 major_base=A major_cov=78/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/44 RA 735 . NC_000913 89103 0 G C bias_e_value=4641640 bias_p_value=0.999998 consensus_score=468.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.998064 major_base=C major_cov=85/43 major_frequency=9.922e-01 minor_base=A minor_cov=1/0 new_cov=85/43 polymorphism_frequency=9.922e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=86/43 RA 736 . NC_000913 89143 0 A G bias_e_value=3157430 bias_p_value=0.680239 consensus_score=488.3 fisher_strand_p_value=0.316176 frequency=1 ks_quality_p_value=1 major_base=G major_cov=93/42 major_frequency=9.926e-01 minor_base=A minor_cov=0/1 new_cov=93/42 polymorphism_frequency=9.926e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=93/43 RA 737 . NC_000913 89145 0 G T bias_e_value=3157430 bias_p_value=0.680239 consensus_score=475.9 fisher_strand_p_value=0.316176 frequency=1 ks_quality_p_value=1 major_base=T major_cov=93/42 major_frequency=9.926e-01 minor_base=. minor_cov=0/1 new_cov=93/42 polymorphism_frequency=9.926e-01 polymorphism_score=-4.1 prediction=consensus ref_cov=0/0 total_cov=93/43 RA 738 . NC_000913 89239 0 G A consensus_score=460.0 frequency=1 major_base=A major_cov=79/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/59 RA 739 . NC_000913 89241 0 C A consensus_score=467.7 frequency=1 major_base=A major_cov=79/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=79/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=79/59 RA 740 . NC_000913 89263 0 A G bias_e_value=3908410 bias_p_value=0.84203 consensus_score=547.6 fisher_strand_p_value=0.493506 frequency=1 ks_quality_p_value=1 major_base=G major_cov=78/75 major_frequency=9.935e-01 minor_base=A minor_cov=0/1 new_cov=78/75 polymorphism_frequency=9.935e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=78/76 RA 741 . NC_000913 89316 0 T C bias_e_value=3890060 bias_p_value=0.838076 consensus_score=602.0 fisher_strand_p_value=0.487952 frequency=1 ks_quality_p_value=1 major_base=C major_cov=80/85 major_frequency=9.940e-01 minor_base=A minor_cov=1/0 new_cov=80/85 polymorphism_frequency=9.940e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/85 RA 742 . NC_000913 89321 0 A G bias_e_value=17.2931 bias_p_value=3.72563e-06 consensus_score=453.9 fisher_strand_p_value=2.28694e-07 frequency=1 ks_quality_p_value=1 major_base=G major_cov=81/62 major_frequency=8.720e-01 minor_base=T minor_cov=0/21 new_cov=81/62 polymorphism_frequency=8.720e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=81/83 RA 743 . NC_000913 89471 0 T G bias_e_value=3996160 bias_p_value=0.860934 consensus_score=519.5 fisher_strand_p_value=0.521368 frequency=1 ks_quality_p_value=1 major_base=G major_cov=56/86 major_frequency=9.861e-01 minor_base=A minor_cov=0/2 new_cov=56/86 polymorphism_frequency=9.861e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=56/89 RA 744 . NC_000913 89570 0 A C consensus_score=460.0 frequency=1 major_base=C major_cov=58/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/68 RA 745 . NC_000913 89699 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=370.3 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/54 major_frequency=9.907e-01 minor_base=A minor_cov=1/0 new_cov=53/54 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/54 RA 746 . NC_000913 89754 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=386.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=53/55 major_frequency=9.908e-01 minor_base=T minor_cov=0/1 new_cov=53/55 polymorphism_frequency=9.908e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=53/56 RA 747 . NC_000913 90432 0 A G consensus_score=293.0 frequency=1 major_base=G major_cov=36/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/46 RA 748 . NC_000913 90435 0 T C bias_e_value=2308710 bias_p_value=0.49739 consensus_score=280.8 fisher_strand_p_value=0.185131 frequency=1 ks_quality_p_value=1 major_base=C major_cov=34/47 major_frequency=9.759e-01 minor_base=T minor_cov=2/0 new_cov=34/47 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=2/0 total_cov=36/47 RA 749 . NC_000913 91904 0 G A bias_e_value=3902360 bias_p_value=0.840728 consensus_score=408.7 fisher_strand_p_value=0.491667 frequency=1 ks_quality_p_value=1 major_base=A major_cov=58/61 major_frequency=9.917e-01 minor_base=C minor_cov=1/0 new_cov=58/61 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/61 RA 750 . NC_000913 91916 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=428.4 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=60/62 major_frequency=9.919e-01 minor_base=G minor_cov=0/1 new_cov=60/62 polymorphism_frequency=9.919e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/63 RA 751 . NC_000913 91922 0 G A consensus_score=417.0 frequency=1 major_base=A major_cov=61/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/62 RA 752 . NC_000913 91949 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=404.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=56/63 major_frequency=9.917e-01 minor_base=C minor_cov=0/1 new_cov=56/63 polymorphism_frequency=9.917e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=56/64 RA 753 . NC_000913 92096 0 A T bias_e_value=3694540 bias_p_value=0.795954 consensus_score=385.5 fisher_strand_p_value=0.433628 frequency=1 ks_quality_p_value=1 major_base=T major_cov=48/64 major_frequency=9.912e-01 minor_base=C minor_cov=1/0 new_cov=48/64 polymorphism_frequency=9.912e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/64 RA 754 . NC_000913 92162 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=362.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=54/53 major_frequency=9.907e-01 minor_base=G minor_cov=0/1 new_cov=54/53 polymorphism_frequency=9.907e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/54 RA 755 . NC_000913 92327 0 G T consensus_score=340.5 frequency=1 major_base=T major_cov=49/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=49/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=49/50 RA 756 . NC_000913 92354 0 A G consensus_score=372.7 frequency=1 major_base=G major_cov=47/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=47/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=47/54 RA 757 . NC_000913 92687 0 A G bias_e_value=3578020 bias_p_value=0.770851 consensus_score=295.4 fisher_strand_p_value=0.404762 frequency=1 ks_quality_p_value=1 major_base=G major_cov=50/33 major_frequency=9.881e-01 minor_base=T minor_cov=0/1 new_cov=50/33 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/34 RA 758 . NC_000913 92810 0 T C consensus_score=328.1 frequency=1 major_base=C major_cov=51/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/45 RA 759 . NC_000913 92843 0 A G consensus_score=326.6 frequency=1 major_base=G major_cov=55/35 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=55/35 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=55/35 RA 760 . NC_000913 94278 0 G A consensus_score=241.7 frequency=1 major_base=A major_cov=28/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/47 RA 761 . NC_000913 134256 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=328.9 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/49 major_frequency=9.899e-01 minor_base=G minor_cov=0/1 new_cov=49/49 polymorphism_frequency=9.899e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/50 RA 762 . NC_000913 240066 0 C A bias_e_value=0.00523701 bias_p_value=1.12827e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=196.8 fisher_strand_p_value=4.54689e-11 frequency=3.036e-01 ks_quality_p_value=1 major_base=C major_cov=26/52 major_frequency=6.964e-01 minor_base=A minor_cov=33/1 new_cov=33/1 polymorphism_frequency=3.036e-01 polymorphism_score=11.6 prediction=polymorphism ref_cov=26/52 total_cov=59/53 RA 763 . NC_000913 246747 0 G T consensus_score=396.8 frequency=1 major_base=T major_cov=58/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=58/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=58/55 RA 764 . NC_000913 480295 0 G A consensus_score=411.2 frequency=1 major_base=A major_cov=61/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/62 RA 765 . NC_000913 480296 0 G A consensus_score=405.8 frequency=1 major_base=A major_cov=61/62 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/62 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/62 RA 766 . NC_000913 690948 0 G A consensus_score=271.9 frequency=1 major_base=A major_cov=36/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/45 RA 767 . NC_000913 700038 0 G A consensus_score=250.7 frequency=1 major_base=A major_cov=46/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/29 RA 768 . NC_000913 710830 0 G T bias_e_value=0.615284 bias_p_value=1.32557e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=186.4 fisher_strand_p_value=6.687e-09 frequency=2.844e-01 ks_quality_p_value=1 major_base=G major_cov=43/35 major_frequency=7.156e-01 minor_base=T minor_cov=0/31 new_cov=0/31 polymorphism_frequency=2.844e-01 polymorphism_score=12.9 prediction=polymorphism ref_cov=43/35 total_cov=43/66 RA 769 . NC_000913 809217 0 C A consensus_score=210.2 frequency=1 major_base=A major_cov=40/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/26 RA 770 . NC_000913 809218 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=235.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=39/26 major_frequency=9.848e-01 minor_base=A minor_cov=1/0 new_cov=39/26 polymorphism_frequency=9.848e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=40/26 RA 771 . NC_000913 834674 0 C A bias_e_value=0.0163731 bias_p_value=3.52743e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=167.2 fisher_strand_p_value=1.49309e-10 frequency=2.738e-01 ks_quality_p_value=1 major_base=C major_cov=16/45 major_frequency=7.262e-01 minor_base=A minor_cov=23/0 new_cov=23/0 polymorphism_frequency=2.738e-01 polymorphism_score=11.7 prediction=polymorphism ref_cov=16/45 total_cov=39/46 RA 772 . NC_000913 847955 0 G A bias_e_value=8.3369e-07 bias_p_value=1.79611e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.0 fisher_strand_p_value=5.30286e-15 frequency=3.082e-01 ks_quality_p_value=1 major_base=G major_cov=64/37 major_frequency=6.918e-01 minor_base=A minor_cov=0/45 new_cov=0/45 polymorphism_frequency=3.082e-01 polymorphism_score=54.7 prediction=polymorphism ref_cov=64/37 total_cov=64/83 RA 773 . NC_000913 848028 0 G T bias_e_value=0.355965 bias_p_value=7.66892e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=284.0 fisher_strand_p_value=3.75946e-09 frequency=2.238e-01 ks_quality_p_value=1 major_base=G major_cov=58/53 major_frequency=7.762e-01 minor_base=T minor_cov=0/32 new_cov=0/32 polymorphism_frequency=2.238e-01 polymorphism_score=11.7 prediction=polymorphism ref_cov=58/53 total_cov=58/85 RA 774 . NC_000913 882452 0 T G consensus_score=263.1 frequency=1 major_base=G major_cov=28/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=28/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=28/44 RA 775 . NC_000913 968837 0 G A consensus_score=231.9 frequency=1 major_base=A major_cov=40/30 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/30 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/30 RA 776 . NC_000913 1040126 0 G T consensus_score=384.4 frequency=1 major_base=T major_cov=51/59 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/59 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/59 RA 777 . NC_000913 1061935 0 G A consensus_score=213.1 frequency=1 major_base=A major_cov=31/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=31/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=31/33 RA 778 . NC_000913 1097118 0 C A bias_e_value=1808510 bias_p_value=0.389627 consensus_reject=FREQUENCY_CUTOFF consensus_score=28.0 fisher_strand_p_value=0.127269 frequency=3.750e-01 ks_quality_p_value=1 major_base=C major_cov=9/21 major_frequency=6.250e-01 minor_base=A minor_cov=10/8 new_cov=10/8 polymorphism_frequency=3.750e-01 polymorphism_score=37.9 prediction=polymorphism ref_cov=9/21 total_cov=19/29 RA 779 . NC_000913 1109632 0 G A bias_e_value=0.18198 bias_p_value=3.92059e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=225.3 fisher_strand_p_value=1.85775e-09 frequency=2.185e-01 ks_quality_p_value=1 major_base=G major_cov=57/36 major_frequency=7.815e-01 minor_base=A minor_cov=0/26 new_cov=0/26 polymorphism_frequency=2.185e-01 polymorphism_score=20.4 prediction=polymorphism ref_cov=57/36 total_cov=57/64 RA 780 . NC_000913 1111727 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=354.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=51/53 major_frequency=9.905e-01 minor_base=G minor_cov=0/1 new_cov=51/53 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/54 RA 781 . NC_000913 1111728 0 C T bias_e_value=3882580 bias_p_value=0.836465 consensus_score=355.4 fisher_strand_p_value=0.485714 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/54 major_frequency=9.905e-01 minor_base=C minor_cov=1/0 new_cov=50/54 polymorphism_frequency=9.905e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=51/54 RA 782 . NC_000913 1169836 0 A G bias_e_value=4641650 bias_p_value=1 consensus_score=317.0 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=G major_cov=32/57 major_frequency=9.889e-01 minor_base=A minor_cov=0/1 new_cov=32/57 polymorphism_frequency=9.889e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=32/58 RA 783 . NC_000913 1189980 0 A G consensus_score=266.6 frequency=1 major_base=G major_cov=34/39 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/39 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/39 RA 784 . NC_000913 1196220 0 C T bias_e_value=3878080 bias_p_value=0.835496 consensus_score=180.4 fisher_strand_p_value=0.484375 frequency=1 ks_quality_p_value=1 major_base=T major_cov=30/33 major_frequency=9.844e-01 minor_base=C minor_cov=1/0 new_cov=30/33 polymorphism_frequency=9.844e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=31/33 RA 785 . NC_000913 1196232 0 C T consensus_score=167.2 frequency=1 major_base=T major_cov=30/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=30/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=30/29 RA 786 . NC_000913 1196245 0 T C bias_e_value=3898730 bias_p_value=0.839945 consensus_score=152.8 fisher_strand_p_value=0.490566 frequency=1 ks_quality_p_value=1 major_base=C major_cov=27/25 major_frequency=9.811e-01 minor_base=T minor_cov=0/1 new_cov=27/25 polymorphism_frequency=9.811e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=27/26 RA 787 . NC_000913 1196247 0 A G consensus_score=160.5 frequency=1 major_base=G major_cov=27/26 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=27/26 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=27/26 RA 788 . NC_000913 1196277 0 C T consensus_score=103.4 frequency=1 major_base=T major_cov=24/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/14 RA 789 . NC_000913 1196280 0 G C consensus_score=98.8 frequency=1 major_base=C major_cov=24/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/14 RA 790 . NC_000913 1196283 0 A G consensus_score=101.0 frequency=1 major_base=G major_cov=24/14 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/14 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/14 RA 791 . NC_000913 1196292 0 C T consensus_score=91.9 frequency=1 major_base=T major_cov=23/12 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=23/12 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=23/12 RA 792 . NC_000913 1196304 0 G A consensus_score=73.0 frequency=1 major_base=A major_cov=20/11 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=20/11 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=20/11 RA 793 . NC_000913 1196316 0 T A consensus_score=59.0 deleted=1 frequency=1 major_base=A major_cov=16/10 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=16/10 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=16/10 RA 794 . NC_000913 1196325 0 A G consensus_score=45.8 deleted=1 frequency=1 major_base=G major_cov=15/6 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=15/6 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=15/6 RA 795 . NC_000913 1196352 0 C A consensus_score=28.2 deleted=1 frequency=1 major_base=A major_cov=12/3 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=12/3 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=12/3 RA 796 . NC_000913 1286831 0 T A bias_e_value=3727690 bias_p_value=0.803096 consensus_reject=FREQUENCY_CUTOFF consensus_score=155.8 fisher_strand_p_value=0.562245 frequency=2.000e-01 ks_quality_p_value=0.786628 major_base=T major_cov=35/25 major_frequency=8.000e-01 minor_base=A minor_cov=7/8 new_cov=7/8 polymorphism_frequency=2.000e-01 polymorphism_score=44.2 prediction=polymorphism ref_cov=35/25 total_cov=44/36 RA 797 . NC_000913 1301992 0 A T consensus_score=409.5 frequency=1 major_base=T major_cov=44/76 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=44/76 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=44/76 RA 798 . NC_000913 1306736 0 T G bias_e_value=3630910 bias_p_value=0.782246 consensus_score=317.0 fisher_strand_p_value=0.417582 frequency=1 ks_quality_p_value=1 major_base=G major_cov=53/37 major_frequency=9.890e-01 minor_base=A minor_cov=0/1 new_cov=53/37 polymorphism_frequency=9.890e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/38 RA 799 . NC_000913 1310770 0 A G bias_e_value=3557900 bias_p_value=0.766516 consensus_score=472.0 fisher_strand_p_value=0.4 frequency=1 ks_quality_p_value=1 major_base=G major_cov=78/51 major_frequency=9.923e-01 minor_base=T minor_cov=0/1 new_cov=78/51 polymorphism_frequency=9.923e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/52 RA 800 . NC_000913 1334966 0 A C bias_e_value=0.328654 bias_p_value=7.08054e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=244.8 fisher_strand_p_value=3.4568e-09 frequency=2.153e-01 ks_quality_p_value=1 major_base=A major_cov=53/60 major_frequency=7.847e-01 minor_base=C minor_cov=31/0 new_cov=31/0 polymorphism_frequency=2.153e-01 polymorphism_score=17.3 prediction=polymorphism ref_cov=53/60 total_cov=84/60 RA 801 . NC_000913 1337394 0 A G consensus_score=207.1 frequency=1 major_base=G major_cov=37/23 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/23 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/23 RA 802 . NC_000913 1357202 0 C T bias_e_value=3699010 bias_p_value=0.796917 consensus_score=239.7 fisher_strand_p_value=0.434783 frequency=1 ks_quality_p_value=1 major_base=T major_cov=29/39 major_frequency=9.855e-01 minor_base=C minor_cov=1/0 new_cov=29/39 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=30/39 RA 803 . NC_000913 1358859 0 T C consensus_score=242.8 frequency=1 major_base=C major_cov=36/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=36/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=36/31 RA 804 . NC_000913 1631903 0 G T bias_e_value=46.6738 bias_p_value=1.00554e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=135.3 fisher_strand_p_value=6.60208e-07 frequency=3.229e-01 ks_quality_p_value=1 major_base=G major_cov=30/35 major_frequency=6.771e-01 minor_base=T minor_cov=0/31 new_cov=0/31 polymorphism_frequency=3.229e-01 polymorphism_score=14.6 prediction=polymorphism ref_cov=30/35 total_cov=30/66 RA 805 . NC_000913 1643679 0 A T consensus_score=241.1 frequency=1 major_base=T major_cov=29/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=29/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=29/45 RA 806 . NC_000913 1652331 0 T C consensus_score=319.0 frequency=1 major_base=C major_cov=39/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=39/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/47 RA 807 . NC_000913 1668408 0 C A bias_e_value=0.00531844 bias_p_value=1.14581e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=205.3 fisher_strand_p_value=4.62058e-11 frequency=2.685e-01 ks_quality_p_value=1 major_base=C major_cov=27/52 major_frequency=7.315e-01 minor_base=A minor_cov=29/0 new_cov=29/0 polymorphism_frequency=2.685e-01 polymorphism_score=10.6 prediction=polymorphism ref_cov=27/52 total_cov=56/52 RA 808 . NC_000913 1708718 0 G A bias_e_value=3198500 bias_p_value=0.689086 consensus_reject=FREQUENCY_CUTOFF consensus_score=84.4 fisher_strand_p_value=0.323942 frequency=2.553e-01 ks_quality_p_value=1 major_base=G major_cov=20/15 major_frequency=7.447e-01 minor_base=A minor_cov=9/3 new_cov=9/3 polymorphism_frequency=2.553e-01 polymorphism_score=18.1 prediction=polymorphism ref_cov=20/15 total_cov=29/18 RA 809 . NC_000913 1721136 0 C T consensus_score=339.2 frequency=1 major_base=T major_cov=34/68 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=34/68 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=34/68 RA 810 . NC_000913 1756353 0 C A bias_e_value=0.638355 bias_p_value=1.37528e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=219.9 fisher_strand_p_value=6.95134e-09 frequency=2.901e-01 ks_quality_p_value=1 major_base=C major_cov=44/49 major_frequency=7.099e-01 minor_base=A minor_cov=37/1 new_cov=37/1 polymorphism_frequency=2.901e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=44/49 total_cov=81/50 RA 811 . NC_000913 1776715 0 A T consensus_score=341.6 frequency=1 major_base=T major_cov=50/49 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/49 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/49 RA 812 . NC_000913 1779583 0 G T bias_e_value=0.0319341 bias_p_value=6.8799e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=174.9 fisher_strand_p_value=3.00079e-10 frequency=3.148e-01 ks_quality_p_value=1 major_base=G major_cov=43/31 major_frequency=6.852e-01 minor_base=T minor_cov=0/34 new_cov=0/34 polymorphism_frequency=3.148e-01 polymorphism_score=15.1 prediction=polymorphism ref_cov=43/31 total_cov=43/65 RA 813 . NC_000913 1812509 0 G T bias_e_value=0.00791927 bias_p_value=1.70613e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=217.2 fisher_strand_p_value=6.99724e-11 frequency=2.703e-01 ks_quality_p_value=1 major_base=G major_cov=52/29 major_frequency=7.297e-01 minor_base=T minor_cov=0/30 new_cov=0/30 polymorphism_frequency=2.703e-01 polymorphism_score=11.3 prediction=polymorphism ref_cov=52/29 total_cov=52/59 RA 814 . NC_000913 1894839 0 T C consensus_score=359.6 frequency=1 major_base=C major_cov=61/37 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/37 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/37 RA 815 . NC_000913 1922815 0 C A bias_e_value=1.27419 bias_p_value=2.74512e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=169.3 fisher_strand_p_value=1.44058e-08 frequency=2.796e-01 ks_quality_p_value=1 major_base=C major_cov=19/48 major_frequency=7.204e-01 minor_base=A minor_cov=24/2 new_cov=24/2 polymorphism_frequency=2.796e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=19/48 total_cov=43/50 RA 816 . NC_000913 1955561 0 C A bias_e_value=10.2053 bias_p_value=2.19863e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=173.3 fisher_strand_p_value=1.30466e-07 frequency=2.796e-01 ks_quality_p_value=1 major_base=C major_cov=30/37 major_frequency=7.204e-01 minor_base=A minor_cov=26/0 new_cov=26/0 polymorphism_frequency=2.796e-01 polymorphism_score=10.9 prediction=polymorphism ref_cov=30/37 total_cov=56/37 RA 817 . NC_000913 1978083 1 . A bias_e_value=4641650 bias_p_value=1 consensus_score=376.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.99982 major_base=A major_cov=48/57 major_frequency=9.906e-01 minor_base=. minor_cov=0/1 new_cov=48/57 polymorphism_frequency=9.906e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=48/58 RA 818 . NC_000913 1987499 0 C A consensus_score=255.1 frequency=1 major_base=A major_cov=45/33 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/33 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/33 RA 819 . NC_000913 1995370 0 C A bias_e_value=40.7365 bias_p_value=8.77629e-06 consensus_reject=FREQUENCY_CUTOFF consensus_score=174.9 fisher_strand_p_value=5.70768e-07 frequency=2.525e-01 ks_quality_p_value=1 major_base=C major_cov=36/38 major_frequency=7.475e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.525e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=36/38 total_cov=61/38 RA 820 . NC_000913 2040433 0 C A bias_e_value=3662790 bias_p_value=0.789113 consensus_score=321.0 fisher_strand_p_value=0.425532 frequency=1 ks_quality_p_value=1 major_base=A major_cov=54/39 major_frequency=9.894e-01 minor_base=G minor_cov=0/1 new_cov=54/39 polymorphism_frequency=9.894e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/40 RA 821 . NC_000913 2173363 0 C . consensus_score=409.1 frequency=1 major_base=. major_cov=41/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/47 RA 822 . NC_000913 2173364 0 C . consensus_score=409.1 frequency=1 major_base=. major_cov=41/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/47 RA 823 . NC_000913 2176126 0 C A bias_e_value=3474750 bias_p_value=0.748602 consensus_score=294.1 fisher_strand_p_value=0.380952 frequency=1 ks_quality_p_value=1 major_base=A major_cov=31/52 major_frequency=9.881e-01 minor_base=C minor_cov=1/0 new_cov=31/52 polymorphism_frequency=9.881e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=32/52 RA 824 . NC_000913 2188087 0 T C consensus_score=366.0 frequency=1 major_base=C major_cov=51/54 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=51/54 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/54 RA 825 . NC_000913 2288418 0 G T bias_e_value=4.89262e-05 bias_p_value=1.05407e-11 consensus_reject=FREQUENCY_CUTOFF consensus_score=231.3 fisher_strand_p_value=3.55315e-13 frequency=3.200e-01 ks_quality_p_value=1 major_base=G major_cov=56/46 major_frequency=6.800e-01 minor_base=T minor_cov=0/48 new_cov=0/48 polymorphism_frequency=3.200e-01 polymorphism_score=25.6 prediction=polymorphism ref_cov=56/46 total_cov=56/94 RA 826 . NC_000913 2384808 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=270.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=43/43 major_frequency=9.885e-01 minor_base=C minor_cov=1/0 new_cov=43/43 polymorphism_frequency=9.885e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=44/43 RA 827 . NC_000913 2410419 0 G A bias_e_value=4050440 bias_p_value=0.872628 consensus_score=274.3 fisher_strand_p_value=0.539818 frequency=1 ks_quality_p_value=1 major_base=A major_cov=52/29 major_frequency=9.759e-01 minor_base=C minor_cov=2/0 new_cov=52/29 polymorphism_frequency=9.759e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/29 RA 828 . NC_000913 2477265 0 A C bias_e_value=0.0322436 bias_p_value=6.94657e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=86.8 fisher_strand_p_value=3.0312e-10 frequency=3.529e-01 ks_quality_p_value=1 major_base=A major_cov=11/33 major_frequency=6.471e-01 minor_base=C minor_cov=24/0 new_cov=24/0 polymorphism_frequency=3.529e-01 polymorphism_score=21.9 prediction=polymorphism ref_cov=11/33 total_cov=35/33 RA 829 . NC_000913 2481400 0 T A bias_e_value=3871270 bias_p_value=0.834029 consensus_score=346.5 fisher_strand_p_value=0.484848 frequency=1 ks_quality_p_value=0.99486 major_base=A major_cov=51/47 major_frequency=9.899e-01 minor_base=T minor_cov=0/1 new_cov=51/47 polymorphism_frequency=9.899e-01 polymorphism_score=-3.4 prediction=consensus ref_cov=0/1 total_cov=51/48 RA 830 . NC_000913 2484827 0 C T consensus_score=399.2 frequency=1 major_base=T major_cov=61/53 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/53 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/53 RA 831 . NC_000913 2579943 0 G A consensus_score=269.1 frequency=1 major_base=A major_cov=40/41 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/41 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/41 RA 832 . NC_000913 2722838 0 G T bias_e_value=0.000667106 bias_p_value=1.43722e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=190.1 fisher_strand_p_value=5.33144e-12 frequency=3.333e-01 ks_quality_p_value=1 major_base=G major_cov=51/27 major_frequency=6.667e-01 minor_base=T minor_cov=1/38 new_cov=1/38 polymorphism_frequency=3.333e-01 polymorphism_score=12.6 prediction=polymorphism ref_cov=51/27 total_cov=52/65 RA 833 . NC_000913 2755866 0 G A bias_e_value=0.00599908 bias_p_value=1.29244e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=169.7 fisher_strand_p_value=5.23842e-11 frequency=2.778e-01 ks_quality_p_value=1 major_base=G major_cov=18/47 major_frequency=7.222e-01 minor_base=A minor_cov=25/0 new_cov=25/0 polymorphism_frequency=2.778e-01 polymorphism_score=12.0 prediction=polymorphism ref_cov=18/47 total_cov=44/47 RA 834 . NC_000913 2821955 0 C A bias_e_value=204.079 bias_p_value=4.3967e-05 consensus_reject=FREQUENCY_CUTOFF consensus_score=172.9 fisher_strand_p_value=3.22209e-06 frequency=2.347e-01 ks_quality_p_value=1 major_base=C major_cov=38/37 major_frequency=7.653e-01 minor_base=A minor_cov=23/0 new_cov=23/0 polymorphism_frequency=2.347e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=38/37 total_cov=61/37 RA 835 . NC_000913 2895349 0 G T bias_e_value=0.565719 bias_p_value=1.21879e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=130.0 fisher_strand_p_value=6.12102e-09 frequency=2.933e-01 ks_quality_p_value=1 major_base=G major_cov=37/16 major_frequency=7.067e-01 minor_base=T minor_cov=0/22 new_cov=0/22 polymorphism_frequency=2.933e-01 polymorphism_score=15.6 prediction=polymorphism ref_cov=37/16 total_cov=37/38 RA 836 . NC_000913 2926292 0 C T consensus_score=341.0 frequency=1 major_base=T major_cov=60/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=60/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/36 RA 837 . NC_000913 2990480 0 C A bias_e_value=0.0759859 bias_p_value=1.63704e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=178.0 fisher_strand_p_value=7.43444e-10 frequency=3.162e-01 ks_quality_p_value=1 major_base=C major_cov=37/43 major_frequency=6.838e-01 minor_base=A minor_cov=37/0 new_cov=37/0 polymorphism_frequency=3.162e-01 polymorphism_score=18.2 prediction=polymorphism ref_cov=37/43 total_cov=74/43 RA 838 . NC_000913 3032307 0 C T bias_e_value=0.355318 bias_p_value=7.655e-08 consensus_reject=FREQUENCY_CUTOFF consensus_score=185.3 fisher_strand_p_value=3.75229e-09 frequency=2.045e-01 ks_quality_p_value=1 major_base=C major_cov=18/52 major_frequency=7.955e-01 minor_base=T minor_cov=18/0 new_cov=18/0 polymorphism_frequency=2.045e-01 polymorphism_score=12.1 prediction=polymorphism ref_cov=18/52 total_cov=36/52 RA 839 . NC_000913 3054886 0 G T bias_e_value=0.00762861 bias_p_value=1.64351e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=182.4 fisher_strand_p_value=6.72967e-11 frequency=2.772e-01 ks_quality_p_value=1 major_base=G major_cov=24/49 major_frequency=7.228e-01 minor_base=T minor_cov=28/0 new_cov=28/0 polymorphism_frequency=2.772e-01 polymorphism_score=18.3 prediction=polymorphism ref_cov=24/49 total_cov=52/49 RA 840 . NC_000913 3054894 0 G T bias_e_value=0.0321698 bias_p_value=6.93067e-09 consensus_reject=FREQUENCY_CUTOFF consensus_score=127.1 fisher_strand_p_value=3.02395e-10 frequency=3.187e-01 ks_quality_p_value=1 major_base=G major_cov=15/47 major_frequency=6.813e-01 minor_base=T minor_cov=27/2 new_cov=27/2 polymorphism_frequency=3.187e-01 polymorphism_score=24.9 prediction=polymorphism ref_cov=15/47 total_cov=42/49 RA 841 . NC_000913 3088010 0 C T consensus_score=460.8 frequency=1 major_base=T major_cov=72/69 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=72/69 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/69 RA 842 . NC_000913 3088011 0 C T bias_e_value=2711960 bias_p_value=0.584267 consensus_score=471.7 fisher_strand_p_value=0.241235 frequency=1 ks_quality_p_value=1 major_base=T major_cov=72/68 major_frequency=9.859e-01 minor_base=G minor_cov=0/2 new_cov=72/68 polymorphism_frequency=9.859e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=72/70 RA 843 . NC_000913 3153502 0 C A bias_e_value=0.00425728 bias_p_value=9.1719e-10 consensus_reject=FREQUENCY_CUTOFF consensus_score=193.7 fisher_strand_p_value=3.6644e-11 frequency=3.173e-01 ks_quality_p_value=1 major_base=C major_cov=26/45 major_frequency=6.827e-01 minor_base=A minor_cov=33/0 new_cov=33/0 polymorphism_frequency=3.173e-01 polymorphism_score=10.5 prediction=polymorphism ref_cov=26/45 total_cov=59/45 RA 844 . NC_000913 3289087 0 A . bias_e_value=3697460 bias_p_value=0.796582 consensus_reject=FREQUENCY_CUTOFF consensus_score=282.6 fisher_strand_p_value=0.465672 frequency=3.603e-01 ks_quality_p_value=0.932805 major_base=A major_cov=37/50 major_frequency=6.397e-01 minor_base=. minor_cov=17/32 new_cov=17/32 polymorphism_frequency=3.603e-01 polymorphism_score=219.3 prediction=polymorphism ref_cov=37/50 total_cov=54/82 RA 845 . NC_000913 3336411 0 G A bias_e_value=3877930 bias_p_value=0.835464 consensus_score=340.1 fisher_strand_p_value=0.494845 frequency=1 ks_quality_p_value=0.978751 major_base=A major_cov=49/47 major_frequency=9.897e-01 minor_base=G minor_cov=0/1 new_cov=49/47 polymorphism_frequency=9.897e-01 polymorphism_score=-4.4 prediction=consensus ref_cov=0/1 total_cov=49/48 RA 846 . NC_000913 3336412 0 A T bias_e_value=3895480 bias_p_value=0.839244 consensus_score=322.6 fisher_strand_p_value=0.489583 frequency=1 ks_quality_p_value=1 major_base=T major_cov=49/46 major_frequency=9.896e-01 minor_base=C minor_cov=0/1 new_cov=49/46 polymorphism_frequency=9.896e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=49/48 RA 847 . NC_000913 3388041 0 T G consensus_score=264.6 frequency=1 major_base=G major_cov=37/38 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/38 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/38 RA 848 . NC_000913 3436697 0 G A consensus_score=325.5 frequency=1 major_base=A major_cov=35/56 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/56 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/56 RA 849 . NC_000913 3474425 0 T C bias_e_value=3458570 bias_p_value=0.745117 consensus_score=385.9 fisher_strand_p_value=0.377358 frequency=1 ks_quality_p_value=1 major_base=C major_cov=66/39 major_frequency=9.906e-01 minor_base=A minor_cov=0/1 new_cov=66/39 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=66/40 RA 850 . NC_000913 3560455 1 . G consensus_score=351.7 frequency=1 major_base=G major_cov=40/55 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=40/55 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=40/55 RA 851 . NC_000913 3623537 0 G A bias_e_value=0.469974 bias_p_value=1.01252e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=201.8 fisher_strand_p_value=5.03571e-09 frequency=2.403e-01 ks_quality_p_value=1 major_base=G major_cov=53/45 major_frequency=7.597e-01 minor_base=A minor_cov=0/31 new_cov=0/31 polymorphism_frequency=2.403e-01 polymorphism_score=19.8 prediction=polymorphism ref_cov=53/45 total_cov=53/78 RA 852 . NC_000913 3623538 0 G A bias_e_value=0.680708 bias_p_value=1.46652e-07 consensus_reject=FREQUENCY_CUTOFF consensus_score=194.9 fisher_strand_p_value=7.43798e-09 frequency=2.545e-01 ks_quality_p_value=1 major_base=G major_cov=52/30 major_frequency=7.455e-01 minor_base=A minor_cov=1/27 new_cov=1/27 polymorphism_frequency=2.545e-01 polymorphism_score=18.5 prediction=polymorphism ref_cov=52/30 total_cov=53/78 RA 853 . NC_000913 3629921 0 C T consensus_score=220.2 frequency=1 major_base=T major_cov=26/44 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=26/44 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=26/44 RA 854 . NC_000913 3682515 0 C T consensus_score=377.5 frequency=1 major_base=T major_cov=61/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=61/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=61/47 RA 855 . NC_000913 3707947 0 C A consensus_score=407.7 frequency=1 major_base=A major_cov=83/36 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=83/36 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=83/36 RA 856 . NC_000913 3725176 0 T G consensus_score=326.4 frequency=1 major_base=G major_cov=45/46 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=45/46 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=45/46 RA 857 . NC_000913 3761230 0 G A consensus_score=231.8 frequency=1 major_base=A major_cov=38/31 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=38/31 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=38/31 RA 858 . NC_000913 3771979 0 G T bias_e_value=4641650 bias_p_value=1 consensus_score=474.6 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=73/62 major_frequency=9.926e-01 minor_base=C minor_cov=1/0 new_cov=73/62 polymorphism_frequency=9.926e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=74/62 RA 859 . NC_000913 3815883 1 . C bias_e_value=4641610 bias_p_value=0.999992 consensus_score=404.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.995913 major_base=C major_cov=50/60 major_frequency=9.910e-01 minor_base=. minor_cov=0/1 new_cov=50/60 polymorphism_frequency=9.910e-01 polymorphism_score=-3.9 prediction=consensus ref_cov=0/1 total_cov=50/61 RA 860 . NC_000913 3823162 0 C T consensus_score=340.7 frequency=1 major_base=T major_cov=35/67 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=35/67 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=35/67 RA 861 . NC_000913 3869637 0 C A consensus_score=346.7 frequency=1 major_base=A major_cov=50/52 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=50/52 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=50/52 RA 862 . NC_000913 3878536 0 G A consensus_score=242.6 frequency=1 major_base=A major_cov=24/45 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/45 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/45 RA 863 . NC_000913 3911533 0 C A bias_e_value=1.9512e-11 bias_p_value=4.20367e-18 consensus_reject=FREQUENCY_CUTOFF consensus_score=244.5 fisher_strand_p_value=9.38044e-20 frequency=3.716e-01 ks_quality_p_value=1 major_base=C major_cov=28/65 major_frequency=6.284e-01 minor_base=A minor_cov=55/0 new_cov=55/0 polymorphism_frequency=3.716e-01 polymorphism_score=20.5 prediction=polymorphism ref_cov=28/65 total_cov=83/65 RA 864 . NC_000913 3967260 0 G T bias_e_value=3618910 bias_p_value=0.779661 consensus_score=405.5 fisher_strand_p_value=0.414634 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/72 major_frequency=9.919e-01 minor_base=C minor_cov=1/0 new_cov=50/72 polymorphism_frequency=9.919e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=51/72 RA 865 . NC_000913 3993531 0 T C bias_e_value=3952780 bias_p_value=0.851588 consensus_score=457.7 fisher_strand_p_value=0.507312 frequency=1 ks_quality_p_value=1 major_base=C major_cov=71/54 major_frequency=9.843e-01 minor_base=A minor_cov=2/0 new_cov=71/54 polymorphism_frequency=9.843e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=74/54 RA 866 . NC_000913 3996049 0 T A consensus_score=426.9 frequency=1 major_base=A major_cov=53/66 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=53/66 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=53/66 RA 867 . NC_000913 4011802 0 C T consensus_score=423.8 frequency=1 major_base=T major_cov=46/78 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=46/78 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=46/78 RA 868 . NC_000913 4084903 0 T G bias_e_value=2760140 bias_p_value=0.594645 consensus_score=228.8 fisher_strand_p_value=0.248612 frequency=1 ks_quality_p_value=1 major_base=G major_cov=33/38 major_frequency=9.595e-01 minor_base=T minor_cov=0/3 new_cov=33/38 polymorphism_frequency=9.595e-01 polymorphism_score=-6.1 prediction=consensus ref_cov=0/3 total_cov=33/41 RA 869 . NC_000913 4092703 0 A G bias_e_value=3582960 bias_p_value=0.771916 consensus_score=363.4 fisher_strand_p_value=0.405941 frequency=1 ks_quality_p_value=1 major_base=G major_cov=60/40 major_frequency=9.901e-01 minor_base=T minor_cov=0/1 new_cov=60/40 polymorphism_frequency=9.901e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=60/41 RA 870 . NC_000913 4113851 0 G A consensus_score=415.7 frequency=1 major_base=A major_cov=75/51 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=75/51 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=75/51 RA 871 . NC_000913 4143377 0 C T consensus_score=256.3 frequency=1 major_base=T major_cov=41/29 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/29 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/29 RA 872 . NC_000913 4161248 0 G T bias_e_value=3867120 bias_p_value=0.833135 consensus_score=350.5 fisher_strand_p_value=0.481132 frequency=1 ks_quality_p_value=1 major_base=T major_cov=50/55 major_frequency=9.906e-01 minor_base=G minor_cov=1/0 new_cov=50/55 polymorphism_frequency=9.906e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=51/55 RA 873 . NC_000913 4164123 0 C G consensus_score=341.7 frequency=1 major_base=G major_cov=54/42 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=54/42 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=54/42 RA 874 . NC_000913 4215347 0 T A consensus_score=474.0 frequency=1 major_base=A major_cov=78/64 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=78/64 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=78/64 RA 875 . NC_000913 4223638 0 T C bias_e_value=1608170 bias_p_value=0.346464 consensus_score=429.7 fisher_strand_p_value=0.107146 frequency=1 ks_quality_p_value=1 major_base=C major_cov=55/63 major_frequency=9.752e-01 minor_base=A minor_cov=3/0 new_cov=55/63 polymorphism_frequency=9.752e-01 polymorphism_score=-6.3 prediction=consensus ref_cov=0/0 total_cov=58/63 RA 876 . NC_000913 4282332 1 . A bias_e_value=4641640 bias_p_value=0.999998 consensus_score=572.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=0.997986 major_base=A major_cov=75/82 major_frequency=9.937e-01 minor_base=. minor_cov=0/1 new_cov=75/82 polymorphism_frequency=9.937e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=0/1 total_cov=75/83 RA 877 . NC_000913 4293781 0 G A consensus_score=299.2 frequency=1 major_base=A major_cov=37/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/48 RA 878 . NC_000913 4293782 0 C T consensus_score=287.2 frequency=1 major_base=T major_cov=37/48 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=37/48 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=37/48 RA 879 . NC_000913 4296268 0 T C bias_e_value=3447390 bias_p_value=0.742707 consensus_reject=FREQUENCY_CUTOFF consensus_score=22.4 fisher_strand_p_value=0.450133 frequency=3.438e-01 ks_quality_p_value=0.832851 major_base=T major_cov=11/10 major_frequency=6.562e-01 minor_base=C minor_cov=8/3 new_cov=8/3 polymorphism_frequency=3.438e-01 polymorphism_score=21.0 prediction=polymorphism ref_cov=11/10 total_cov=19/13 RA 880 . NC_000913 4296380 1 . C bias_e_value=3413370 bias_p_value=0.735378 consensus_score=191.4 fisher_strand_p_value=0.368421 frequency=1 ks_quality_p_value=0.997497 major_base=C major_cov=36/20 major_frequency=9.825e-01 minor_base=. minor_cov=0/1 new_cov=36/20 polymorphism_frequency=9.825e-01 polymorphism_score=-3.0 prediction=consensus ref_cov=0/1 total_cov=36/21 RA 881 . NC_000913 4296380 2 . G bias_e_value=3417650 bias_p_value=0.7363 consensus_score=195.8 fisher_strand_p_value=0.368421 frequency=1 ks_quality_p_value=1 major_base=G major_cov=36/20 major_frequency=9.825e-01 minor_base=. minor_cov=0/1 new_cov=36/20 polymorphism_frequency=9.825e-01 polymorphism_score=-3.6 prediction=consensus ref_cov=0/1 total_cov=36/21 RA 882 . NC_000913 4325644 0 C T consensus_score=238.2 frequency=1 major_base=T major_cov=24/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=24/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=24/47 RA 883 . NC_000913 4360965 0 C A bias_e_value=3.80882e-08 bias_p_value=8.20575e-15 consensus_reject=FREQUENCY_CUTOFF consensus_score=206.6 fisher_strand_p_value=2.21501e-16 frequency=3.566e-01 ks_quality_p_value=1 major_base=C major_cov=26/57 major_frequency=6.434e-01 minor_base=A minor_cov=46/0 new_cov=46/0 polymorphism_frequency=3.566e-01 polymorphism_score=25.1 prediction=polymorphism ref_cov=26/57 total_cov=72/57 RA 884 . NC_000913 4392997 0 G A consensus_score=446.5 frequency=1 major_base=A major_cov=43/80 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=43/80 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=43/80 RA 885 . NC_000913 4393552 0 G A consensus_score=340.3 frequency=1 major_base=A major_cov=52/47 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=52/47 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=52/47 RA 886 . NC_000913 4396373 0 C T bias_e_value=3520480 bias_p_value=0.758453 consensus_score=242.4 fisher_strand_p_value=0.391304 frequency=1 ks_quality_p_value=1 major_base=T major_cov=42/26 major_frequency=9.855e-01 minor_base=G minor_cov=0/1 new_cov=42/26 polymorphism_frequency=9.855e-01 polymorphism_score=NA prediction=consensus ref_cov=1/0 total_cov=43/27 RA 887 . NC_000913 4396772 0 T C bias_e_value=4641650 bias_p_value=1 consensus_score=195.5 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=C major_cov=28/28 major_frequency=9.825e-01 minor_base=T minor_cov=0/1 new_cov=28/28 polymorphism_frequency=9.825e-01 polymorphism_score=NA prediction=consensus ref_cov=0/1 total_cov=28/29 RA 888 . NC_000913 4427822 0 C A bias_e_value=1.26387e-06 bias_p_value=2.72289e-13 consensus_reject=FREQUENCY_CUTOFF consensus_score=227.8 fisher_strand_p_value=8.14218e-15 frequency=3.383e-01 ks_quality_p_value=1 major_base=C major_cov=32/56 major_frequency=6.617e-01 minor_base=A minor_cov=45/0 new_cov=45/0 polymorphism_frequency=3.383e-01 polymorphism_score=16.5 prediction=polymorphism ref_cov=32/56 total_cov=77/56 RA 889 . NC_000913 4473900 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=285.2 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=39/48 major_frequency=9.886e-01 minor_base=G minor_cov=0/1 new_cov=39/48 polymorphism_frequency=9.886e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=39/49 RA 890 . NC_000913 4475493 0 T C consensus_score=523.6 frequency=1 major_base=C major_cov=68/78 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=68/78 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=68/78 RA 891 . NC_000913 4508810 0 C T bias_e_value=4641650 bias_p_value=1 consensus_score=486.8 fisher_strand_p_value=1 frequency=1 ks_quality_p_value=1 major_base=T major_cov=59/86 major_frequency=9.932e-01 minor_base=G minor_cov=0/1 new_cov=59/86 polymorphism_frequency=9.932e-01 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=59/87 RA 892 . NC_000913 4510238 0 T G bias_e_value=17939 bias_p_value=0.00386479 consensus_score=410.9 fisher_strand_p_value=0.000443126 frequency=1 ks_quality_p_value=1 major_base=G major_cov=68/53 major_frequency=9.237e-01 minor_base=T minor_cov=0/10 new_cov=68/53 polymorphism_frequency=9.237e-01 polymorphism_score=NA prediction=consensus ref_cov=0/10 total_cov=68/63 RA 893 . NC_000913 4556486 0 C T consensus_score=609.9 frequency=1 major_base=T major_cov=105/63 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=105/63 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=105/63 RA 894 . NC_000913 4561368 0 C T consensus_score=307.4 frequency=1 major_base=T major_cov=41/50 major_frequency=1.000e+00 minor_base=N minor_cov=0/0 new_cov=41/50 polymorphism_frequency=1.000e+00 polymorphism_score=NA prediction=consensus ref_cov=0/0 total_cov=41/50 RA 895 . NC_000913 4563778 0 G . bias_e_value=1128820 bias_p_value=0.243193 consensus_score=367.8 fisher_strand_p_value=0.0651918 frequency=1 ks_quality_p_value=1 major_base=. major_cov=44/38 major_frequency=9.425e-01 minor_base=G minor_cov=5/0 new_cov=44/38 polymorphism_frequency=9.425e-01 polymorphism_score=12.3 prediction=consensus ref_cov=5/0 total_cov=49/38 MC 896 . NC_000913 275509 372748 0 0 left_inside_cov=0 left_outside_cov=84 right_inside_cov=1 right_outside_cov=85 MC 897 . NC_000913 1196312 1211454 0 0 left_inside_cov=29 left_outside_cov=31 right_inside_cov=28 right_outside_cov=31 MC 898 . NC_000913 1299499 1300697 1198 0 left_inside_cov=0 left_outside_cov=131 right_inside_cov=0 right_outside_cov=131 MC 899 . NC_000913 1411925 1434984 0 0 left_inside_cov=0 left_outside_cov=94 right_inside_cov=13 right_outside_cov=106 MC 900 . NC_000913 1468079 1580934 1164 0 left_inside_cov=30 left_outside_cov=31 right_inside_cov=0 right_outside_cov=95 MC 901 . NC_000913 1978495 1979270 0 767 left_inside_cov=0 left_outside_cov=94 right_inside_cov=0 right_outside_cov=96 MC 902 . NC_000913 2262279 2268956 0 0 left_inside_cov=0 left_outside_cov=94 right_inside_cov=0 right_outside_cov=94 MC 903 . NC_000913 2466385 2476599 0 0 left_inside_cov=0 left_outside_cov=99 right_inside_cov=13 right_outside_cov=112 MC 904 . NC_000913 3423822 3424477 412 238 left_inside_cov=30 left_outside_cov=31 right_inside_cov=26 right_outside_cov=32 MC 905 . NC_000913 3708467 3708621 0 0 left_inside_cov=0 left_outside_cov=37 right_inside_cov=29 right_outside_cov=34 MC 906 . NC_000913 4541024 4542041 0 0 left_inside_cov=0 left_outside_cov=105 right_inside_cov=0 right_outside_cov=105 JC 907 . NC_000913 1 1 NC_000913 4641652 -1 0 alignment_overlap=0 coverage_minus=67 coverage_plus=62 flanking_left=300 flanking_right=300 frequency=1 ignore=CIRCULAR_CHROMOSOME junction_possible_overlap_registers=294 key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0 max_left=297 max_left_minus=297 max_left_plus=241 max_min_left=149 max_min_left_minus=149 max_min_left_plus=147 max_min_right=148 max_min_right_minus=148 max_min_right_plus=148 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=295 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.43 new_junction_read_count=133 polymorphism_frequency=1.000e+00 pos_hash_score=72 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=129 JC 908 . NC_000913 15387 1 NC_000913 458795 -1 0 alignment_overlap=4 coverage_minus=47 coverage_plus=35 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__15387__1__NC_000913__458799__-1__4____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=239 max_min_left=138 max_min_left_minus=130 max_min_left_plus=138 max_min_right=144 max_min_right_minus=144 max_min_right_plus=119 max_pos_hash_score=582 max_right=291 max_right_minus=291 max_right_plus=279 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.91 new_junction_read_count=83 polymorphism_frequency=9.878e-01 pos_hash_score=51 prediction=consensus read_count_offset=6 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=4 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=82 JC 909 . NC_000913 16974 1 NC_000913 3720633 1 0 alignment_overlap=0 coverage_minus=15 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=5.417e-01 junction_possible_overlap_registers=294 key=NC_000913__16974__1__NC_000913__3720633__1__0____300__300__0__0 max_left=295 max_left_minus=275 max_left_plus=295 max_min_left=136 max_min_left_minus=103 max_min_left_plus=136 max_min_right=147 max_min_right_minus=47 max_min_right_plus=147 max_pos_hash_score=590 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=1.2 new_junction_coverage=0.56 new_junction_read_count=52 polymorphism_frequency=5.417e-01 pos_hash_score=36 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.47 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=44 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=52 JC 910 . NC_000913 16976 -1 NC_000913 3722075 -1 0 alignment_overlap=3 coverage_minus=32 coverage_plus=30 flanking_left=300 flanking_right=300 frequency=5.803e-01 junction_possible_overlap_registers=291 key=NC_000913__16978__-1__NC_000913__3722076__-1__3____300__300__0__0 max_left=294 max_left_minus=268 max_left_plus=294 max_min_left=137 max_min_left_minus=130 max_min_left_plus=137 max_min_right=143 max_min_right_minus=118 max_min_right_plus=143 max_pos_hash_score=584 max_right=294 max_right_minus=294 max_right_plus=260 neg_log10_pos_hash_p_value=0.9 new_junction_coverage=0.68 new_junction_read_count=62 polymorphism_frequency=5.803e-01 pos_hash_score=39 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=1 side_1_possible_overlap_registers=292 side_1_read_count=45 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=2 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=62 JC 911 . NC_000913 59123 1 NC_000913 3722075 -1 0 alignment_overlap=0 coverage_minus=6 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=1.383e-01 junction_possible_overlap_registers=294 key=NC_000913__59123__1__NC_000913__3722075__-1__0____300__300__0__0 max_left=295 max_left_minus=179 max_left_plus=295 max_min_left=144 max_min_left_minus=144 max_min_left_plus=132 max_min_right=146 max_min_right_minus=145 max_min_right_plus=146 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=167 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.14 new_junction_read_count=13 polymorphism_frequency=1.383e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.87 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=81 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=12 JC 912 . NC_000913 59125 -1 NC_000913 3720633 1 0 alignment_overlap=1 coverage_minus=8 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.254e-01 junction_possible_overlap_registers=293 key=NC_000913__59125__-1__NC_000913__3720632__1__1____300__300__0__0 max_left=241 max_left_minus=241 max_left_plus=173 max_min_left=140 max_min_left_minus=104 max_min_left_plus=140 max_min_right=126 max_min_right_minus=109 max_min_right_plus=126 max_pos_hash_score=588 max_right=286 max_right_minus=286 max_right_plus=159 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.13 new_junction_read_count=12 polymorphism_frequency=1.254e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.91 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=84 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=12 JC 913 . NC_000913 71511 -1 NC_000913 71881 1 0 alignment_overlap=5 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.167e-02 junction_possible_overlap_registers=289 key=NC_000913__71511__-1__NC_000913__71876__1__5____300__300__0__0 max_left=125 max_left_minus=125 max_left_plus=125 max_min_left=6 max_min_left_minus=0 max_min_left_plus=6 max_min_right=80 max_min_right_minus=80 max_min_right_plus=80 max_pos_hash_score=580 max_right=288 max_right_minus=80 max_right_plus=288 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.167e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.98 side_1_overlap=5 side_1_possible_overlap_registers=294 side_1_read_count=91 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.03 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=94 side_2_redundant=0 total_non_overlap_reads=3 JC 914 . NC_000913 170117 1 NC_000913 381260 1 0 alignment_overlap=0 coverage_minus=40 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__170117__1__NC_000913__381260__1__0____300__300__0__1 max_left=293 max_left_minus=279 max_left_plus=293 max_min_left=145 max_min_left_minus=145 max_min_left_plus=143 max_min_right=148 max_min_right_minus=148 max_min_right_plus=137 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=292 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.98 new_junction_read_count=91 polymorphism_frequency=1.000e+00 pos_hash_score=57 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=88 JC 915 . NC_000913 170121 -1 NC_000913 382590 -1 0 alignment_overlap=0 coverage_minus=27 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__170121__-1__NC_000913__382590__-1__0____300__300__0__1 max_left=274 max_left_minus=269 max_left_plus=274 max_min_left=141 max_min_left_minus=133 max_min_left_plus=141 max_min_right=143 max_min_right_minus=143 max_min_right_plus=142 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=258 neg_log10_pos_hash_p_value=0.5 new_junction_coverage=0.80 new_junction_read_count=74 polymorphism_frequency=1.000e+00 pos_hash_score=47 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=73 JC 916 . NC_000913 257907 -1 NC_000913 258684 1 0 alignment_overlap=8 coverage_minus=43 coverage_plus=67 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=286 key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0 max_left=288 max_left_minus=288 max_left_plus=286 max_min_left=139 max_min_left_minus=105 max_min_left_plus=139 max_min_right=144 max_min_right_minus=122 max_min_right_plus=144 max_pos_hash_score=574 max_right=280 max_right_minus=280 max_right_plus=273 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.24 new_junction_read_count=112 polymorphism_frequency=9.914e-01 pos_hash_score=66 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.02 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=2 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=110 JC 917 . NC_000913 257908 1 NC_000913 1744590 -1 0 alignment_overlap=0 coverage_minus=6 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.304e-01 junction_possible_overlap_registers=294 key=NC_000913__257908__1__NC_000913__1744590__-1__0____300__300__1__0 max_left=274 max_left_minus=274 max_left_plus=191 max_min_left=134 max_min_left_minus=54 max_min_left_plus=134 max_min_right=109 max_min_right_minus=95 max_min_right_plus=109 max_pos_hash_score=590 max_right=265 max_right_minus=265 max_right_plus=202 neg_log10_pos_hash_p_value=5.8 new_junction_coverage=0.10 new_junction_read_count=9 polymorphism_frequency=1.304e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=9 JC 918 . NC_000913 275508 -1 NC_000913 372749 1 0 alignment_overlap=10 coverage_minus=42 coverage_plus=39 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=284 key=NC_000913__275508__-1__NC_000913__372739__1__10____300__300__0__0 max_left=286 max_left_minus=262 max_left_plus=286 max_min_left=142 max_min_left_minus=119 max_min_left_plus=142 max_min_right=140 max_min_right_minus=140 max_min_right_plus=131 max_pos_hash_score=570 max_right=289 max_right_minus=289 max_right_plus=275 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.94 new_junction_read_count=84 polymorphism_frequency=1.000e+00 pos_hash_score=52 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=81 JC 919 . NC_000913 279163 1 NC_000913 1744590 -1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.762e-02 junction_possible_overlap_registers=294 key=NC_000913__279163__1__NC_000913__1744590__-1__0____300__300__1__0 max_left=97 max_left_minus=54 max_left_plus=97 max_min_left=97 max_min_left_minus=54 max_min_left_plus=97 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=590 max_right=265 max_right_minus=265 max_right_plus=202 neg_log10_pos_hash_p_value=8.7 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=4.762e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=3 JC 920 . NC_000913 291401 -1 NC_000913 1744583 1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=7.717e-02 junction_possible_overlap_registers=293 key=NC_000913__291402__-1__NC_000913__1744583__1__1____300__300__1__0 max_left=67 max_left_minus=15 max_left_plus=67 max_min_left=67 max_min_left_minus=15 max_min_left_plus=67 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=588 max_right=284 max_right_minus=284 max_right_plus=235 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.05 new_junction_read_count=5 polymorphism_frequency=7.717e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=1 side_2_possible_overlap_registers=294 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=4 JC 921 . NC_000913 381260 1 NC_000913 480865 -1 0 alignment_overlap=0 coverage_minus=81 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__381260__1__NC_000913__480865__-1__0____300__300__1__0 max_left=298 max_left_minus=298 max_left_plus=296 max_min_left=138 max_min_left_minus=137 max_min_left_plus=138 max_min_right=146 max_min_right_minus=146 max_min_right_plus=129 max_pos_hash_score=590 max_right=299 max_right_minus=295 max_right_plus=299 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.51 new_junction_read_count=140 polymorphism_frequency=1.000e+00 pos_hash_score=80 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=134 JC 922 . NC_000913 381260 1 NC_000913 572733 -1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=10 flanking_left=300 flanking_right=300 frequency=1.176e-01 junction_possible_overlap_registers=294 key=NC_000913__381260__1__NC_000913__572733__-1__0____300__300__1__0 max_left=263 max_left_minus=218 max_left_plus=263 max_min_left=135 max_min_left_minus=135 max_min_left_plus=135 max_min_right=119 max_min_right_minus=82 max_min_right_plus=119 max_pos_hash_score=590 max_right=294 max_right_minus=214 max_right_plus=294 neg_log10_pos_hash_p_value=5.2 new_junction_coverage=0.15 new_junction_read_count=14 polymorphism_frequency=1.176e-01 pos_hash_score=11 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=105 side_2_redundant=0 total_non_overlap_reads=14 JC 923 . NC_000913 382590 -1 NC_000913 480861 1 0 alignment_overlap=1 coverage_minus=77 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__382590__-1__NC_000913__480860__1__1____300__300__1__0 max_left=295 max_left_minus=257 max_left_plus=295 max_min_left=148 max_min_left_minus=148 max_min_left_plus=132 max_min_right=142 max_min_right_minus=139 max_min_right_plus=142 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=293 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.28 new_junction_read_count=118 polymorphism_frequency=1.000e+00 pos_hash_score=66 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 924 . NC_000913 382590 -1 NC_000913 572729 1 0 alignment_overlap=0 coverage_minus=9 coverage_plus=10 flanking_left=300 flanking_right=300 frequency=1.760e-01 junction_possible_overlap_registers=294 key=NC_000913__382590__-1__NC_000913__572729__1__0____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=182 max_min_left=146 max_min_left_minus=54 max_min_left_plus=146 max_min_right=129 max_min_right_minus=108 max_min_right_plus=129 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=292 neg_log10_pos_hash_p_value=4.1 new_junction_coverage=0.24 new_junction_read_count=22 polymorphism_frequency=1.760e-01 pos_hash_score=15 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=19 JC 925 . NC_000913 458790 1 NC_000913 609350 -1 0 alignment_overlap=3 coverage_minus=43 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__458787__1__NC_000913__609350__-1__3____300__300__0__1 max_left=296 max_left_minus=292 max_left_plus=296 max_min_left=133 max_min_left_minus=120 max_min_left_plus=133 max_min_right=143 max_min_right_minus=142 max_min_right_plus=143 max_pos_hash_score=584 max_right=292 max_right_minus=279 max_right_plus=292 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.96 new_junction_read_count=88 polymorphism_frequency=9.885e-01 pos_hash_score=58 prediction=consensus read_count_offset=6 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=285 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=3 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=85 JC 926 . NC_000913 518132 1 NC_000913 3722075 -1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.383e-02 junction_possible_overlap_registers=294 key=NC_000913__518132__1__NC_000913__3722075__-1__0____300__300__0__0 max_left=210 max_left_minus=210 max_left_plus=130 max_min_left=130 max_min_left_minus=126 max_min_left_plus=130 max_min_right=128 max_min_right_minus=128 max_min_right_plus=0 max_pos_hash_score=590 max_right=222 max_right_minus=222 max_right_plus=210 neg_log10_pos_hash_p_value=7.0 new_junction_coverage=0.06 new_junction_read_count=6 polymorphism_frequency=6.383e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.95 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=88 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=6 JC 927 . NC_000913 518134 -1 NC_000913 3720633 1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=4.444e-02 junction_possible_overlap_registers=294 key=NC_000913__518134__-1__NC_000913__3720633__1__0____300__300__0__0 max_left=162 max_left_minus=16 max_left_plus=162 max_min_left=87 max_min_left_minus=16 max_min_left_plus=87 max_min_right=138 max_min_right_minus=0 max_min_right_plus=138 max_pos_hash_score=590 max_right=297 max_right_minus=284 max_right_plus=297 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=4.444e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.93 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=86 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=4 JC 928 . NC_000913 607765 1 NC_000913 3722075 -1 0 alignment_overlap=1 coverage_minus=60 coverage_plus=40 flanking_left=300 flanking_right=300 frequency=7.039e-01 junction_possible_overlap_registers=293 key=NC_000913__607764__1__NC_000913__3722075__-1__1____300__300__0__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=148 max_min_left_minus=148 max_min_left_plus=139 max_min_right=145 max_min_right_minus=144 max_min_right_plus=145 max_pos_hash_score=588 max_right=297 max_right_minus=297 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.16 new_junction_read_count=107 polymorphism_frequency=7.039e-01 pos_hash_score=65 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.49 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=45 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=100 JC 929 . NC_000913 607767 -1 NC_000913 3720633 1 0 alignment_overlap=2 coverage_minus=27 coverage_plus=31 flanking_left=300 flanking_right=300 frequency=5.810e-01 junction_possible_overlap_registers=292 key=NC_000913__607769__-1__NC_000913__3720633__1__2____300__300__0__0 max_left=295 max_left_minus=291 max_left_plus=295 max_min_left=133 max_min_left_minus=133 max_min_left_plus=131 max_min_right=145 max_min_right_minus=144 max_min_right_plus=145 max_pos_hash_score=586 max_right=294 max_right_minus=294 max_right_plus=282 neg_log10_pos_hash_p_value=1.2 new_junction_coverage=0.66 new_junction_read_count=61 polymorphism_frequency=5.810e-01 pos_hash_score=36 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.48 side_1_overlap=0 side_1_possible_overlap_registers=292 side_1_read_count=44 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=2 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=58 JC 930 . NC_000913 609350 -1 NC_000913 1303314 1 0 alignment_overlap=3 coverage_minus=34 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=291 key=NC_000913__609350__-1__NC_000913__1303311__1__3____300__300__1__0 max_left=296 max_left_minus=296 max_left_plus=296 max_min_left=146 max_min_left_minus=143 max_min_left_plus=146 max_min_right=144 max_min_right_minus=130 max_min_right_plus=144 max_pos_hash_score=584 max_right=296 max_right_minus=283 max_right_plus=296 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.87 new_junction_read_count=80 polymorphism_frequency=9.874e-01 pos_hash_score=52 prediction=consensus read_count_offset=6 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=3 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=80 JC 931 . NC_000913 631475 1 NC_000913 3722075 -1 0 alignment_overlap=0 coverage_minus=1 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=5.882e-02 junction_possible_overlap_registers=294 key=NC_000913__631475__1__NC_000913__3722075__-1__0____300__300__0__0 max_left=295 max_left_minus=161 max_left_plus=295 max_min_left=80 max_min_left_minus=0 max_min_left_plus=80 max_min_right=139 max_min_right_minus=139 max_min_right_plus=24 max_pos_hash_score=590 max_right=220 max_right_minus=139 max_right_plus=220 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=5.882e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.69 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=4 JC 932 . NC_000913 696504 -1 NC_000913 696940 1 0 alignment_overlap=29 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=9.198e-02 junction_possible_overlap_registers=265 key=NC_000913__696504__-1__NC_000913__696911__1__29____300__300__0__0 max_left=259 max_left_minus=171 max_left_plus=259 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=55 max_min_right_minus=55 max_min_right_plus=55 max_pos_hash_score=532 max_right=55 max_right_minus=55 max_right_plus=55 neg_log10_pos_hash_p_value=6.5 new_junction_coverage=0.10 new_junction_read_count=8 polymorphism_frequency=9.198e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.21 side_1_overlap=29 side_1_possible_overlap_registers=294 side_1_read_count=112 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=265 side_2_read_count=57 side_2_redundant=0 total_non_overlap_reads=8 JC 933 . NC_000913 696506 -1 NC_000913 696619 1 0 alignment_overlap=77 coverage_minus=4 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.066e-01 junction_possible_overlap_registers=217 key=NC_000913__696506__-1__NC_000913__696542__1__77____300__300__0__0 max_left=203 max_left_minus=203 max_left_plus=127 max_min_left=1 max_min_left_minus=0 max_min_left_plus=1 max_min_right=105 max_min_right_minus=105 max_min_right_plus=95 max_pos_hash_score=436 max_right=219 max_right_minus=105 max_right_plus=219 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.12 new_junction_read_count=8 polymorphism_frequency=1.066e-01 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=77 side_1_possible_overlap_registers=294 side_1_read_count=103 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.85 side_2_overlap=0 side_2_possible_overlap_registers=217 side_2_read_count=58 side_2_redundant=0 total_non_overlap_reads=8 JC 934 . NC_000913 696506 -1 NC_000913 697057 1 -45 alignment_overlap=-45 coverage_minus=6 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.305e-01 junction_possible_overlap_registers=249 key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0 max_left=231 max_left_minus=231 max_left_plus=204 max_min_left=71 max_min_left_minus=71 max_min_left_plus=71 max_min_right=61 max_min_right_minus=60 max_min_right_plus=61 max_pos_hash_score=500 max_right=133 max_right_minus=133 max_right_plus=133 neg_log10_pos_hash_p_value=5.7 new_junction_coverage=0.14 new_junction_read_count=11 polymorphism_frequency=1.305e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.11 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=103 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=70 side_2_redundant=0 total_non_overlap_reads=11 unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT JC 935 . NC_000913 696741 -1 NC_000913 697135 1 0 alignment_overlap=78 coverage_minus=6 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=1.529e-01 junction_possible_overlap_registers=216 key=NC_000913__696741__-1__NC_000913__697057__1__78____300__300__0__0 max_left=142 max_left_minus=142 max_left_plus=142 max_min_left=10 max_min_left_minus=10 max_min_left_plus=0 max_min_right=62 max_min_right_minus=62 max_min_right_plus=62 max_pos_hash_score=434 max_right=212 max_right_minus=212 max_right_plus=62 neg_log10_pos_hash_p_value=5.0 new_junction_coverage=0.13 new_junction_read_count=9 polymorphism_frequency=1.529e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.70 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=65 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=52 side_2_redundant=0 total_non_overlap_reads=9 JC 936 . NC_000913 729860 1 NC_000913 3720633 1 0 alignment_overlap=0 coverage_minus=19 coverage_plus=26 flanking_left=300 flanking_right=300 frequency=5.921e-01 junction_possible_overlap_registers=294 key=NC_000913__729860__1__NC_000913__3720633__1__0____300__300__0__0 max_left=294 max_left_minus=273 max_left_plus=294 max_min_left=138 max_min_left_minus=138 max_min_left_plus=137 max_min_right=124 max_min_right_minus=71 max_min_right_plus=124 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=284 neg_log10_pos_hash_p_value=1.6 new_junction_coverage=0.49 new_junction_read_count=45 polymorphism_frequency=5.921e-01 pos_hash_score=31 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.33 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=31 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=45 JC 937 . NC_000913 729862 -1 NC_000913 3722075 -1 0 alignment_overlap=0 coverage_minus=23 coverage_plus=11 flanking_left=300 flanking_right=300 frequency=5.231e-01 junction_possible_overlap_registers=294 key=NC_000913__729862__-1__NC_000913__3722075__-1__0____300__300__0__0 max_left=295 max_left_minus=259 max_left_plus=295 max_min_left=144 max_min_left_minus=130 max_min_left_plus=144 max_min_right=149 max_min_right_minus=149 max_min_right_plus=58 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=215 neg_log10_pos_hash_p_value=2.3 new_junction_coverage=0.37 new_junction_read_count=34 polymorphism_frequency=5.231e-01 pos_hash_score=25 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.33 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=31 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=34 JC 938 . NC_000913 732239 -1 NC_000913 3622029 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.746e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0 max_left=262 max_left_minus=51 max_left_plus=262 max_min_left=51 max_min_left_minus=51 max_min_left_plus=51 max_min_right=26 max_min_right_minus=0 max_min_right_plus=26 max_pos_hash_score=566 max_right=253 max_right_minus=115 max_right_plus=253 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=1.746e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=56 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.03 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=6 JC 939 . NC_000913 732239 -1 NC_000913 3765020 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.697e-01 junction_possible_overlap_registers=282 key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0 max_left=262 max_left_minus=51 max_left_plus=262 max_min_left=51 max_min_left_minus=51 max_min_left_plus=51 max_min_right=26 max_min_right_minus=0 max_min_right_plus=26 max_pos_hash_score=566 max_right=253 max_right_minus=115 max_right_plus=253 neg_log10_pos_hash_p_value=7.8 new_junction_coverage=0.07 new_junction_read_count=6 polymorphism_frequency=1.697e-01 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.60 side_1_overlap=12 side_1_possible_overlap_registers=294 side_1_read_count=56 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.06 side_2_overlap=0 side_2_possible_overlap_registers=282 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=6 JC 940 . NC_000913 781369 1 NC_000913 2521252 -1 0 alignment_overlap=78 coverage_minus=5 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.447e-01 junction_possible_overlap_registers=216 key=NC_000913__781369__1__NC_000913__2521330__-1__78____300__300__0__0 max_left=170 max_left_minus=170 max_left_plus=161 max_min_left=24 max_min_left_minus=18 max_min_left_plus=24 max_min_right=62 max_min_right_minus=57 max_min_right_plus=62 max_pos_hash_score=434 max_right=62 max_right_minus=57 max_right_plus=62 neg_log10_pos_hash_p_value=4.3 new_junction_coverage=0.13 new_junction_read_count=9 polymorphism_frequency=1.447e-01 pos_hash_score=9 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.80 side_1_overlap=78 side_1_possible_overlap_registers=294 side_1_read_count=74 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.76 side_2_overlap=0 side_2_possible_overlap_registers=216 side_2_read_count=52 side_2_redundant=0 total_non_overlap_reads=9 JC 941 . NC_000913 781446 -1 NC_000913 781811 1 0 alignment_overlap=20 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=5.123e-02 junction_possible_overlap_registers=274 key=NC_000913__781446__-1__NC_000913__781791__1__20____300__300__0__0 max_left=98 max_left_minus=98 max_left_plus=98 max_min_left=98 max_min_left_minus=98 max_min_left_plus=98 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=550 max_right=140 max_right_minus=140 max_right_plus=140 neg_log10_pos_hash_p_value=8.3 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=5.123e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.77 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=71 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.95 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=82 side_2_redundant=0 total_non_overlap_reads=3 JC 942 . NC_000913 1014151 1 NC_000913 1469240 -1 0 alignment_overlap=0 coverage_minus=21 coverage_plus=55 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1014151__1__NC_000913__1469240__-1__0____300__300__0__1 max_left=296 max_left_minus=296 max_left_plus=295 max_min_left=141 max_min_left_minus=141 max_min_left_plus=128 max_min_right=142 max_min_right_minus=111 max_min_right_plus=142 max_pos_hash_score=590 max_right=297 max_right_minus=296 max_right_plus=297 neg_log10_pos_hash_p_value=0.4 new_junction_coverage=0.87 new_junction_read_count=81 polymorphism_frequency=1.000e+00 pos_hash_score=50 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=76 JC 943 . NC_000913 1014155 -1 NC_000913 1467910 1 0 alignment_overlap=0 coverage_minus=40 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1014155__-1__NC_000913__1467910__1__0____300__300__0__1 max_left=293 max_left_minus=292 max_left_plus=293 max_min_left=149 max_min_left_minus=149 max_min_left_plus=147 max_min_right=131 max_min_right_minus=131 max_min_right_plus=123 max_pos_hash_score=590 max_right=294 max_right_minus=294 max_right_plus=279 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=0.96 new_junction_read_count=89 polymorphism_frequency=1.000e+00 pos_hash_score=60 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=88 JC 944 . NC_000913 1050545 -1 NC_000913 1744590 -1 0 alignment_overlap=0 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.250e-02 junction_possible_overlap_registers=294 key=NC_000913__1050545__-1__NC_000913__1744590__-1__0____300__300__0__0 max_left=134 max_left_minus=54 max_left_plus=134 max_min_left=134 max_min_left_minus=54 max_min_left_plus=134 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=590 max_right=265 max_right_minus=265 max_right_plus=202 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=6.250e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.65 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=60 side_2_redundant=0 total_non_overlap_reads=4 JC 945 . NC_000913 1227665 -1 NC_000913 1228049 1 0 alignment_overlap=11 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=2.797e-02 junction_possible_overlap_registers=283 key=NC_000913__1227665__-1__NC_000913__1228038__1__11____300__300__0__0 max_left=62 max_left_minus=62 max_left_plus=57 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=43 max_min_right_minus=43 max_min_right_plus=43 max_pos_hash_score=568 max_right=43 max_right_minus=43 max_right_plus=43 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=2.797e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.28 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=119 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.05 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=94 side_2_redundant=0 total_non_overlap_reads=3 JC 946 . NC_000913 1286906 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=5 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=1.135e-01 junction_possible_overlap_registers=274 key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=253 max_left_minus=253 max_left_plus=4 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=42 max_min_right_minus=42 max_min_right_plus=0 max_pos_hash_score=550 max_right=90 max_right_minus=42 max_right_plus=90 neg_log10_pos_hash_p_value=7.1 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=1.135e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.73 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=68 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.53 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=46 side_2_redundant=0 total_non_overlap_reads=6 JC 947 . NC_000913 1287084 -1 NC_000913 1287557 1 0 alignment_overlap=20 coverage_minus=6 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.906e-01 junction_possible_overlap_registers=274 key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0 max_left=251 max_left_minus=251 max_left_plus=156 max_min_left=77 max_min_left_minus=77 max_min_left_plus=77 max_min_right=124 max_min_right_minus=121 max_min_right_plus=124 max_pos_hash_score=550 max_right=255 max_right_minus=124 max_right_plus=255 neg_log10_pos_hash_p_value=5.1 new_junction_coverage=0.14 new_junction_read_count=12 polymorphism_frequency=1.906e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.53 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=46 side_2_redundant=0 total_non_overlap_reads=11 JC 948 . NC_000913 1293196 1 NC_000913 1300693 -1 0 alignment_overlap=0 coverage_minus=8 coverage_plus=12 flanking_left=300 flanking_right=300 frequency=1.858e-01 junction_possible_overlap_registers=294 key=NC_000913__1293196__1__NC_000913__1300693__-1__0____300__300__0__1 max_left=269 max_left_minus=269 max_left_plus=212 max_min_left=143 max_min_left_minus=94 max_min_left_plus=143 max_min_right=148 max_min_right_minus=148 max_min_right_plus=112 max_pos_hash_score=590 max_right=283 max_right_minus=214 max_right_plus=283 neg_log10_pos_hash_p_value=3.7 new_junction_coverage=0.23 new_junction_read_count=21 polymorphism_frequency=1.858e-01 pos_hash_score=17 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.99 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=92 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=20 JC 949 . NC_000913 1293199 -1 NC_000913 1299499 1 0 alignment_overlap=0 coverage_minus=6 coverage_plus=26 flanking_left=300 flanking_right=300 frequency=2.683e-01 junction_possible_overlap_registers=294 key=NC_000913__1293199__-1__NC_000913__1299499__1__0____300__300__0__1 max_left=298 max_left_minus=288 max_left_plus=298 max_min_left=139 max_min_left_minus=68 max_min_left_plus=139 max_min_right=95 max_min_right_minus=95 max_min_right_plus=63 max_pos_hash_score=590 max_right=282 max_right_minus=232 max_right_plus=282 neg_log10_pos_hash_p_value=2.9 new_junction_coverage=0.36 new_junction_read_count=33 polymorphism_frequency=2.683e-01 pos_hash_score=21 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.97 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=90 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=32 JC 950 . NC_000913 1299498 -1 NC_000913 1300698 1 0 alignment_overlap=4 coverage_minus=66 coverage_plus=64 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=294 max_min_left=146 max_min_left_minus=127 max_min_left_plus=146 max_min_right=140 max_min_right_minus=139 max_min_right_plus=140 max_pos_hash_score=582 max_right=295 max_right_minus=292 max_right_plus=295 neg_log10_pos_hash_p_value=0.0 new_junction_coverage=1.43 new_junction_read_count=131 polymorphism_frequency=1.000e+00 pos_hash_score=79 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=4 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=290 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=130 JC 951 . NC_000913 1303319 -1 NC_000913 2514273 1 0 alignment_overlap=4 coverage_minus=38 coverage_plus=76 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=290 key=NC_000913__1303323__-1__NC_000913__2514273__1__4____300__300__0__1 max_left=291 max_left_minus=290 max_left_plus=291 max_min_left=145 max_min_left_minus=110 max_min_left_plus=145 max_min_right=146 max_min_right_minus=146 max_min_right_plus=144 max_pos_hash_score=582 max_right=293 max_right_minus=276 max_right_plus=293 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.27 new_junction_read_count=116 polymorphism_frequency=9.913e-01 pos_hash_score=65 prediction=consensus read_count_offset=6 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.01 side_1_overlap=0 side_1_possible_overlap_registers=284 side_1_read_count=1 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=4 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=114 JC 952 . NC_000913 1364831 -1 NC_000913 1365444 1 0 alignment_overlap=10 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.718e-02 junction_possible_overlap_registers=284 key=NC_000913__1364831__-1__NC_000913__1365434__1__10____300__300__0__0 max_left=123 max_left_minus=123 max_left_plus=121 max_min_left=4 max_min_left_minus=0 max_min_left_plus=4 max_min_right=44 max_min_right_minus=44 max_min_right_plus=44 max_pos_hash_score=570 max_right=44 max_right_minus=44 max_right_plus=44 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.718e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=77 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.90 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=81 side_2_redundant=0 total_non_overlap_reads=3 JC 953 . NC_000913 1397238 -1 NC_000913 1978494 -1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0 max_left=294 max_left_minus=285 max_left_plus=294 max_min_left=142 max_min_left_minus=139 max_min_left_plus=142 max_min_right=133 max_min_right_minus=108 max_min_right_plus=133 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=295 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.01 new_junction_read_count=94 polymorphism_frequency=1.000e+00 pos_hash_score=60 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=92 JC 954 . NC_000913 1399590 1 NC_000913 2101749 1 0 alignment_overlap=0 coverage_minus=46 coverage_plus=50 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1399590__1__NC_000913__2101749__1__0____300__300__0__1 max_left=297 max_left_minus=287 max_left_plus=297 max_min_left=148 max_min_left_minus=148 max_min_left_plus=145 max_min_right=123 max_min_right_minus=118 max_min_right_plus=123 max_pos_hash_score=590 max_right=294 max_right_minus=294 max_right_plus=273 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.08 new_junction_read_count=100 polymorphism_frequency=1.000e+00 pos_hash_score=57 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=290 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=96 JC 955 . NC_000913 1399593 -1 NC_000913 2290113 -1 0 alignment_overlap=1 coverage_minus=37 coverage_plus=47 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__1399594__-1__NC_000913__2290113__-1__1____300__300__0__1 max_left=297 max_left_minus=293 max_left_plus=297 max_min_left=139 max_min_left_minus=138 max_min_left_plus=139 max_min_right=132 max_min_right_minus=132 max_min_right_plus=115 max_pos_hash_score=588 max_right=292 max_right_minus=292 max_right_plus=287 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.91 new_junction_read_count=84 polymorphism_frequency=1.000e+00 pos_hash_score=55 prediction=consensus read_count_offset=4 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=84 JC 956 . NC_000913 1411924 -1 NC_000913 1434985 1 0 alignment_overlap=26 coverage_minus=40 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=268 key=NC_000913__1411924__-1__NC_000913__1434959__1__26____300__300__0__0 max_left=273 max_left_minus=273 max_left_plus=243 max_min_left=128 max_min_left_minus=122 max_min_left_plus=128 max_min_right=137 max_min_right_minus=132 max_min_right_plus=137 max_pos_hash_score=538 max_right=264 max_right_minus=248 max_right_plus=264 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.10 new_junction_read_count=93 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=26 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=268 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=93 JC 957 . NC_000913 1469240 -1 NC_000913 1580935 1 0 alignment_overlap=0 coverage_minus=56 coverage_plus=38 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1469240__-1__NC_000913__1580935__1__0____300__300__1__0 max_left=297 max_left_minus=297 max_left_plus=297 max_min_left=146 max_min_left_minus=137 max_min_left_plus=146 max_min_right=148 max_min_right_minus=137 max_min_right_plus=148 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=280 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=1.02 new_junction_read_count=95 polymorphism_frequency=1.000e+00 pos_hash_score=53 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=94 JC 958 . NC_000913 1469240 -1 NC_000913 1705614 -1 0 alignment_overlap=1 coverage_minus=37 coverage_plus=53 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__1469240__-1__NC_000913__1705615__-1__1____300__300__1__0 max_left=293 max_left_minus=286 max_left_plus=293 max_min_left=142 max_min_left_minus=136 max_min_left_plus=142 max_min_right=149 max_min_right_minus=137 max_min_right_plus=149 max_pos_hash_score=588 max_right=296 max_right_minus=295 max_right_plus=296 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.00 new_junction_read_count=92 polymorphism_frequency=9.891e-01 pos_hash_score=57 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=288 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=90 JC 959 . NC_000913 1470516 -1 NC_000913 2756223 1 0 alignment_overlap=0 coverage_minus=22 coverage_plus=28 flanking_left=300 flanking_right=300 frequency=3.968e-01 junction_possible_overlap_registers=294 key=NC_000913__1470516__-1__NC_000913__2756223__1__0____300__300__1__0 max_left=299 max_left_minus=284 max_left_plus=299 max_min_left=144 max_min_left_minus=112 max_min_left_plus=144 max_min_right=132 max_min_right_minus=124 max_min_right_plus=132 max_pos_hash_score=590 max_right=283 max_right_minus=258 max_right_plus=283 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.54 new_junction_read_count=50 polymorphism_frequency=3.968e-01 pos_hash_score=37 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.82 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=76 side_2_redundant=0 total_non_overlap_reads=50 JC 960 . NC_000913 1651548 -1 NC_000913 1705610 1 0 alignment_overlap=0 coverage_minus=59 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1651548__-1__NC_000913__1705610__1__0____300__300__1__0 max_left=294 max_left_minus=293 max_left_plus=294 max_min_left=149 max_min_left_minus=149 max_min_left_plus=127 max_min_right=141 max_min_right_minus=141 max_min_right_plus=132 max_pos_hash_score=590 max_right=289 max_right_minus=284 max_right_plus=289 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.15 new_junction_read_count=107 polymorphism_frequency=9.906e-01 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.01 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=1 side_2_redundant=0 total_non_overlap_reads=101 JC 961 . NC_000913 1744583 1 NC_000913 1979268 -1 -2 alignment_overlap=-2 coverage_minus=0 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=6.290e-02 junction_possible_overlap_registers=292 key=NC_000913__1744583__1__NC_000913__1979268__-1__-2__GT__300__300__0__1 max_left=158 max_left_minus=0 max_left_plus=158 max_min_left=121 max_min_left_minus=0 max_min_left_plus=121 max_min_right=140 max_min_right_minus=0 max_min_right_plus=140 max_pos_hash_score=586 max_right=282 max_right_minus=0 max_right_plus=282 neg_log10_pos_hash_p_value=8.0 new_junction_coverage=0.04 new_junction_read_count=4 polymorphism_frequency=6.290e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=4 unique_read_sequence=GT JC 962 . NC_000913 1744583 1 NC_000913 1979270 -1 0 alignment_overlap=0 coverage_minus=6 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.549e-01 junction_possible_overlap_registers=294 key=NC_000913__1744583__1__NC_000913__1979270__-1__0____300__300__0__1 max_left=285 max_left_minus=236 max_left_plus=285 max_min_left=147 max_min_left_minus=147 max_min_left_plus=121 max_min_right=67 max_min_right_minus=67 max_min_right_plus=15 max_pos_hash_score=590 max_right=284 max_right_minus=236 max_right_plus=284 neg_log10_pos_hash_p_value=6.2 new_junction_coverage=0.12 new_junction_read_count=11 polymorphism_frequency=1.549e-01 pos_hash_score=8 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.65 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=60 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=10 JC 963 . NC_000913 1979270 -1 NC_000913 4541023 -1 0 alignment_overlap=0 coverage_minus=66 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979270__-1__NC_000913__4541023__-1__0____300__300__1__0 max_left=295 max_left_minus=278 max_left_plus=295 max_min_left=147 max_min_left_minus=147 max_min_left_plus=122 max_min_right=148 max_min_right_minus=148 max_min_right_plus=117 max_pos_hash_score=590 max_right=298 max_right_minus=298 max_right_plus=294 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=105 polymorphism_frequency=1.000e+00 pos_hash_score=69 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=103 JC 964 . NC_000913 1979271 1 NC_000913 2102947 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=56 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1 max_left=294 max_left_minus=294 max_left_plus=294 max_min_left=145 max_min_left_minus=145 max_min_left_plus=135 max_min_right=150 max_min_right_minus=145 max_min_right_plus=150 max_pos_hash_score=590 max_right=299 max_right_minus=299 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.04 new_junction_read_count=96 polymorphism_frequency=1.000e+00 pos_hash_score=64 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=92 JC 965 . NC_000913 2262278 -1 NC_000913 2268957 1 0 alignment_overlap=1 coverage_minus=46 coverage_plus=45 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=293 key=NC_000913__2262278__-1__NC_000913__2268956__1__1____300__300__0__0 max_left=294 max_left_minus=294 max_left_plus=264 max_min_left=136 max_min_left_minus=136 max_min_left_plus=134 max_min_right=142 max_min_right_minus=142 max_min_right_plus=138 max_pos_hash_score=588 max_right=288 max_right_minus=288 max_right_plus=282 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.02 new_junction_read_count=94 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=91 JC 966 . NC_000913 2288919 1 NC_000913 4497970 1 0 alignment_overlap=0 coverage_minus=6 coverage_plus=18 flanking_left=300 flanking_right=300 frequency=1.953e-01 junction_possible_overlap_registers=294 key=NC_000913__2288919__1__NC_000913__4497970__1__0____300__300__1__0 max_left=287 max_left_minus=269 max_left_plus=287 max_min_left=149 max_min_left_minus=133 max_min_left_plus=149 max_min_right=103 max_min_right_minus=48 max_min_right_plus=103 max_pos_hash_score=590 max_right=216 max_right_minus=202 max_right_plus=216 neg_log10_pos_hash_p_value=3.9 new_junction_coverage=0.27 new_junction_read_count=25 polymorphism_frequency=1.953e-01 pos_hash_score=16 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.11 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=24 JC 967 . NC_000913 2466384 -1 NC_000913 2476600 1 0 alignment_overlap=16 coverage_minus=57 coverage_plus=42 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=278 key=NC_000913__2466384__-1__NC_000913__2476584__1__16____300__300__0__0 max_left=281 max_left_minus=280 max_left_plus=281 max_min_left=138 max_min_left_minus=138 max_min_left_plus=126 max_min_right=137 max_min_right_minus=127 max_min_right_plus=137 max_pos_hash_score=558 max_right=281 max_right_minus=275 max_right_plus=281 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=99 polymorphism_frequency=1.000e+00 pos_hash_score=65 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=16 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=278 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=99 JC 968 . NC_000913 2518116 -1 NC_000913 2518232 1 0 alignment_overlap=81 coverage_minus=5 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=1.036e-01 junction_possible_overlap_registers=213 key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0 max_left=163 max_left_minus=163 max_left_plus=12 max_min_left=94 max_min_left_minus=94 max_min_left_plus=12 max_min_right=87 max_min_right_minus=87 max_min_right_plus=0 max_pos_hash_score=428 max_right=207 max_right_minus=149 max_right_plus=207 neg_log10_pos_hash_p_value=5.9 new_junction_coverage=0.09 new_junction_read_count=6 polymorphism_frequency=1.036e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=81 side_1_possible_overlap_registers=294 side_1_read_count=77 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.71 side_2_overlap=0 side_2_possible_overlap_registers=213 side_2_read_count=48 side_2_redundant=0 total_non_overlap_reads=6 JC 969 . NC_000913 2558698 -1 NC_000913 2565489 1 0 alignment_overlap=8 coverage_minus=4 coverage_plus=10 flanking_left=300 flanking_right=300 frequency=1.851e-01 junction_possible_overlap_registers=286 key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0 max_left=290 max_left_minus=198 max_left_plus=290 max_min_left=138 max_min_left_minus=138 max_min_left_plus=106 max_min_right=127 max_min_right_minus=66 max_min_right_plus=127 max_pos_hash_score=574 max_right=244 max_right_minus=234 max_right_plus=244 neg_log10_pos_hash_p_value=4.7 new_junction_coverage=0.16 new_junction_read_count=14 polymorphism_frequency=1.851e-01 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.69 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=64 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.68 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=61 side_2_redundant=0 total_non_overlap_reads=14 JC 970 . NC_000913 2653419 -1 NC_000913 2653746 1 0 alignment_overlap=25 coverage_minus=6 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=1.587e-01 junction_possible_overlap_registers=269 key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0 max_left=253 max_left_minus=234 max_left_plus=253 max_min_left=58 max_min_left_minus=41 max_min_left_plus=58 max_min_right=106 max_min_right_minus=105 max_min_right_plus=106 max_pos_hash_score=540 max_right=259 max_right_minus=234 max_right_plus=259 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.17 new_junction_read_count=14 polymorphism_frequency=1.587e-01 pos_hash_score=12 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.83 side_1_overlap=25 side_1_possible_overlap_registers=294 side_1_read_count=77 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.92 side_2_overlap=0 side_2_possible_overlap_registers=269 side_2_read_count=78 side_2_redundant=0 total_non_overlap_reads=14 JC 971 . NC_000913 2653549 -1 NC_000913 2653872 1 0 alignment_overlap=16 coverage_minus=3 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.463e-02 junction_possible_overlap_registers=278 key=NC_000913__2653549__-1__NC_000913__2653856__1__16____300__300__0__0 max_left=144 max_left_minus=144 max_left_plus=144 max_min_left=77 max_min_left_minus=77 max_min_left_plus=77 max_min_right=72 max_min_right_minus=72 max_min_right_plus=72 max_pos_hash_score=558 max_right=251 max_right_minus=251 max_right_plus=251 neg_log10_pos_hash_p_value=6.7 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=6.463e-02 pos_hash_score=6 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.07 side_1_overlap=16 side_1_possible_overlap_registers=294 side_1_read_count=99 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.24 side_2_overlap=0 side_2_possible_overlap_registers=278 side_2_read_count=109 side_2_redundant=0 total_non_overlap_reads=6 JC 972 . NC_000913 2756224 -1 NC_000913 4508679 -1 0 alignment_overlap=1 coverage_minus=25 coverage_plus=37 flanking_left=300 flanking_right=300 frequency=4.648e-01 junction_possible_overlap_registers=293 key=NC_000913__2756225__-1__NC_000913__4508679__-1__1____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=282 max_min_left=139 max_min_left_minus=139 max_min_left_plus=121 max_min_right=141 max_min_right_minus=141 max_min_right_plus=128 max_pos_hash_score=588 max_right=283 max_right_minus=283 max_right_plus=250 neg_log10_pos_hash_p_value=1.1 new_junction_coverage=0.71 new_junction_read_count=66 polymorphism_frequency=4.648e-01 pos_hash_score=37 prediction=polymorphism side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=76 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=62 JC 973 . NC_000913 2817942 -1 NC_000913 2818492 1 0 alignment_overlap=20 coverage_minus=4 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=1.409e-01 junction_possible_overlap_registers=274 key=NC_000913__2817942__-1__NC_000913__2818472__1__20____300__300__0__0 max_left=280 max_left_minus=280 max_left_plus=247 max_min_left=78 max_min_left_minus=78 max_min_left_plus=24 max_min_right=45 max_min_right_minus=45 max_min_right_plus=41 max_pos_hash_score=550 max_right=277 max_right_minus=202 max_right_plus=277 neg_log10_pos_hash_p_value=5.1 new_junction_coverage=0.12 new_junction_read_count=10 polymorphism_frequency=1.409e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=20 side_1_possible_overlap_registers=294 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.60 side_2_overlap=0 side_2_possible_overlap_registers=274 side_2_read_count=52 side_2_redundant=0 total_non_overlap_reads=10 JC 974 . NC_000913 2913392 1 NC_000913 2997691 -1 0 alignment_overlap=0 coverage_minus=39 coverage_plus=54 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913392__1__NC_000913__2997691__-1__0____300__300__0__1 max_left=295 max_left_minus=284 max_left_plus=295 max_min_left=144 max_min_left_minus=144 max_min_left_plus=138 max_min_right=143 max_min_right_minus=138 max_min_right_plus=143 max_pos_hash_score=590 max_right=296 max_right_minus=296 max_right_plus=292 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.05 new_junction_read_count=97 polymorphism_frequency=1.000e+00 pos_hash_score=58 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=93 JC 975 . NC_000913 2913396 -1 NC_000913 2996361 1 0 alignment_overlap=0 coverage_minus=51 coverage_plus=50 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2913396__-1__NC_000913__2996361__1__0____300__300__0__1 max_left=295 max_left_minus=295 max_left_plus=295 max_min_left=146 max_min_left_minus=136 max_min_left_plus=146 max_min_right=149 max_min_right_minus=145 max_min_right_plus=149 max_pos_hash_score=590 max_right=286 max_right_minus=286 max_right_plus=261 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.11 new_junction_read_count=103 polymorphism_frequency=1.000e+00 pos_hash_score=61 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=101 JC 976 . NC_000913 2996361 1 NC_000913 3546574 1 0 alignment_overlap=0 coverage_minus=54 coverage_plus=36 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__2996361__1__NC_000913__3546574__1__0____300__300__1__0 max_left=280 max_left_minus=276 max_left_plus=280 max_min_left=149 max_min_left_minus=149 max_min_left_plus=135 max_min_right=141 max_min_right_minus=141 max_min_right_plus=127 max_pos_hash_score=590 max_right=297 max_right_minus=261 max_right_plus=297 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.05 new_junction_read_count=97 polymorphism_frequency=9.795e-01 pos_hash_score=59 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.02 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=2 side_2_redundant=0 total_non_overlap_reads=90 JC 977 . NC_000913 2996361 1 NC_000913 3727297 -1 0 alignment_overlap=0 coverage_minus=5 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=8.527e-02 junction_possible_overlap_registers=294 key=NC_000913__2996361__1__NC_000913__3727297__-1__0____300__300__1__0 max_left=273 max_left_minus=234 max_left_plus=273 max_min_left=54 max_min_left_minus=54 max_min_left_plus=15 max_min_right=139 max_min_right_minus=74 max_min_right_plus=139 max_pos_hash_score=590 max_right=294 max_right_minus=259 max_right_plus=294 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.12 new_junction_read_count=11 polymorphism_frequency=8.527e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.27 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=118 side_2_redundant=0 total_non_overlap_reads=11 JC 978 . NC_000913 3013862 -1 NC_000913 3722075 -1 0 alignment_overlap=1 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.541e-02 junction_possible_overlap_registers=293 key=NC_000913__3013862__-1__NC_000913__3722076__-1__1____300__300__0__0 max_left=222 max_left_minus=76 max_left_plus=222 max_min_left=76 max_min_left_minus=76 max_min_left_plus=39 max_min_right=77 max_min_right_minus=0 max_min_right_plus=77 max_pos_hash_score=588 max_right=260 max_right_minus=223 max_right_plus=260 neg_log10_pos_hash_p_value=8.6 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.541e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.88 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=82 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=3 JC 979 . NC_000913 3110642 -1 NC_000913 3130146 1 0 alignment_overlap=0 coverage_minus=5 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=1.028e-01 junction_possible_overlap_registers=294 key=NC_000913__3110642__-1__NC_000913__3130146__1__0____300__300__0__1 max_left=275 max_left_minus=275 max_left_plus=138 max_min_left=138 max_min_left_minus=94 max_min_left_plus=138 max_min_right=123 max_min_right_minus=123 max_min_right_plus=0 max_pos_hash_score=590 max_right=293 max_right_minus=293 max_right_plus=235 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.12 new_junction_read_count=11 polymorphism_frequency=1.028e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.04 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=96 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=11 JC 980 . NC_000913 3186096 1 NC_000913 3546578 -1 0 alignment_overlap=2 coverage_minus=69 coverage_plus=48 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=292 key=NC_000913__3186096__1__NC_000913__3546580__-1__2____300__300__1__0 max_left=295 max_left_minus=295 max_left_plus=294 max_min_left=145 max_min_left_minus=135 max_min_left_plus=145 max_min_right=148 max_min_right_minus=147 max_min_right_plus=148 max_pos_hash_score=586 max_right=296 max_right_minus=295 max_right_plus=296 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.29 new_junction_read_count=119 polymorphism_frequency=1.000e+00 pos_hash_score=70 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=287 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=117 JC 981 . NC_000913 3186096 1 NC_000913 3722142 -1 0 alignment_overlap=1 coverage_minus=9 coverage_plus=7 flanking_left=300 flanking_right=300 frequency=9.195e-02 junction_possible_overlap_registers=293 key=NC_000913__3186096__1__NC_000913__3722143__-1__1____300__300__1__0 max_left=279 max_left_minus=217 max_left_plus=279 max_min_left=134 max_min_left_minus=134 max_min_left_plus=17 max_min_right=101 max_min_right_minus=97 max_min_right_plus=101 max_pos_hash_score=588 max_right=295 max_right_minus=295 max_right_plus=287 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.17 new_junction_read_count=16 polymorphism_frequency=9.195e-02 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.71 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=158 side_2_redundant=0 total_non_overlap_reads=16 JC 982 . NC_000913 3187426 -1 NC_000913 3722138 1 0 alignment_overlap=2 coverage_minus=6 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=7.362e-02 junction_possible_overlap_registers=292 key=NC_000913__3187426__-1__NC_000913__3722136__1__2____300__300__1__0 max_left=275 max_left_minus=275 max_left_plus=238 max_min_left=142 max_min_left_minus=4 max_min_left_plus=142 max_min_right=117 max_min_right_minus=117 max_min_right_plus=65 max_pos_hash_score=586 max_right=294 max_right_minus=294 max_right_plus=237 neg_log10_pos_hash_p_value=5.4 new_junction_coverage=0.13 new_junction_read_count=12 polymorphism_frequency=7.362e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=2 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.64 side_2_overlap=0 side_2_possible_overlap_registers=292 side_2_read_count=151 side_2_redundant=0 total_non_overlap_reads=12 JC 983 . NC_000913 3187426 -1 NC_000913 3938768 1 0 alignment_overlap=0 coverage_minus=61 coverage_plus=49 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3187426__-1__NC_000913__3938768__1__0____300__300__1__0 max_left=293 max_left_minus=293 max_left_plus=292 max_min_left=146 max_min_left_minus=142 max_min_left_plus=146 max_min_right=140 max_min_right_minus=140 max_min_right_plus=112 max_pos_hash_score=590 max_right=295 max_right_minus=295 max_right_plus=291 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.22 new_junction_read_count=113 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus read_count_offset=5 side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=289 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=110 JC 984 . NC_000913 3194751 1 NC_000913 3720633 1 0 alignment_overlap=1 coverage_minus=4 coverage_plus=5 flanking_left=300 flanking_right=300 frequency=1.059e-01 junction_possible_overlap_registers=293 key=NC_000913__3194750__1__NC_000913__3720633__1__1____300__300__0__0 max_left=293 max_left_minus=293 max_left_plus=153 max_min_left=123 max_min_left_minus=123 max_min_left_plus=94 max_min_right=146 max_min_right_minus=5 max_min_right_plus=146 max_pos_hash_score=588 max_right=296 max_right_minus=259 max_right_plus=296 neg_log10_pos_hash_p_value=6.6 new_junction_coverage=0.10 new_junction_read_count=9 polymorphism_frequency=1.059e-01 pos_hash_score=7 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.82 side_1_overlap=0 side_1_possible_overlap_registers=293 side_1_read_count=76 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=1 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=9 JC 985 . NC_000913 3323962 -1 NC_000913 3324312 1 0 alignment_overlap=10 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=3.033e-02 junction_possible_overlap_registers=284 key=NC_000913__3323962__-1__NC_000913__3324302__1__10____300__300__0__0 max_left=110 max_left_minus=110 max_left_plus=110 max_min_left=59 max_min_left_minus=59 max_min_left_plus=0 max_min_right=98 max_min_right_minus=94 max_min_right_plus=98 max_pos_hash_score=570 max_right=164 max_right_minus=164 max_right_plus=98 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.033e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.01 side_1_overlap=10 side_1_possible_overlap_registers=294 side_1_read_count=94 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.13 side_2_overlap=0 side_2_possible_overlap_registers=284 side_2_read_count=101 side_2_redundant=0 total_non_overlap_reads=3 JC 986 . NC_000913 3468779 -1 NC_000913 3469104 1 0 alignment_overlap=17 coverage_minus=2 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=4.722e-02 junction_possible_overlap_registers=277 key=NC_000913__3468779__-1__NC_000913__3469087__1__17____300__300__0__0 max_left=119 max_left_minus=119 max_left_plus=119 max_min_left=11 max_min_left_minus=11 max_min_left_plus=11 max_min_right=99 max_min_right_minus=99 max_min_right_plus=99 max_pos_hash_score=556 max_right=99 max_right_minus=99 max_right_plus=99 neg_log10_pos_hash_p_value=7.7 new_junction_coverage=0.05 new_junction_read_count=4 polymorphism_frequency=4.722e-02 pos_hash_score=4 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.85 side_1_overlap=17 side_1_possible_overlap_registers=294 side_1_read_count=79 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.00 side_2_overlap=0 side_2_possible_overlap_registers=277 side_2_read_count=87 side_2_redundant=0 total_non_overlap_reads=4 JC 987 . NC_000913 3469049 -1 NC_000913 3469353 1 0 alignment_overlap=8 coverage_minus=3 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=6.265e-02 junction_possible_overlap_registers=286 key=NC_000913__3469049__-1__NC_000913__3469345__1__8____300__300__0__0 max_left=146 max_left_minus=146 max_left_plus=146 max_min_left=72 max_min_left_minus=72 max_min_left_plus=0 max_min_right=120 max_min_right_minus=120 max_min_right_plus=120 max_pos_hash_score=574 max_right=219 max_right_minus=219 max_right_plus=120 neg_log10_pos_hash_p_value=7.4 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=6.265e-02 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.00 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=93 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.32 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=119 side_2_redundant=0 total_non_overlap_reads=5 JC 988 . NC_000913 3500654 -1 NC_000913 3500931 1 0 alignment_overlap=8 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=3.410e-02 junction_possible_overlap_registers=286 key=NC_000913__3500654__-1__NC_000913__3500923__1__8____300__300__0__0 max_left=96 max_left_minus=96 max_left_plus=83 max_min_left=96 max_min_left_minus=96 max_min_left_plus=83 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=574 max_right=284 max_right_minus=196 max_right_plus=284 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=3.410e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.81 side_1_overlap=8 side_1_possible_overlap_registers=294 side_1_read_count=75 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.08 side_2_overlap=0 side_2_possible_overlap_registers=286 side_2_read_count=97 side_2_redundant=0 total_non_overlap_reads=3 JC 989 . NC_000913 3584195 -1 NC_000913 4542042 1 0 alignment_overlap=0 coverage_minus=57 coverage_plus=47 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3584195__-1__NC_000913__4542042__1__0____300__300__1__0 max_left=294 max_left_minus=286 max_left_plus=294 max_min_left=149 max_min_left_minus=140 max_min_left_plus=149 max_min_right=142 max_min_right_minus=138 max_min_right_plus=142 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=297 neg_log10_pos_hash_p_value=0.1 new_junction_coverage=1.13 new_junction_read_count=105 polymorphism_frequency=1.000e+00 pos_hash_score=68 prediction=consensus side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=104 JC 990 . NC_000913 3619471 -1 NC_000913 3722075 -1 0 alignment_overlap=0 coverage_minus=5 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=2.258e-01 junction_possible_overlap_registers=294 key=NC_000913__3619471__-1__NC_000913__3722075__-1__0____300__300__0__0 max_left=295 max_left_minus=239 max_left_plus=295 max_min_left=69 max_min_left_minus=69 max_min_left_plus=0 max_min_right=126 max_min_right_minus=126 max_min_right_plus=5 max_pos_hash_score=590 max_right=231 max_right_minus=231 max_right_plus=5 neg_log10_pos_hash_p_value=7.5 new_junction_coverage=0.08 new_junction_read_count=7 polymorphism_frequency=2.258e-01 pos_hash_score=5 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.26 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=24 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=0 total_non_overlap_reads=7 JC 991 . NC_000913 3621836 -1 NC_000913 3622017 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=6.347e-01 junction_possible_overlap_registers=282 key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0 max_left=51 max_left_minus=51 max_left_plus=51 max_min_left=51 max_min_left_minus=51 max_min_left_plus=51 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=566 max_right=253 max_right_minus=115 max_right_plus=253 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=6.347e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.03 side_2_overlap=12 side_2_possible_overlap_registers=294 side_2_read_count=3 side_2_redundant=0 total_non_overlap_reads=5 JC 992 . NC_000913 3648146 -1 NC_000913 3648378 1 0 alignment_overlap=58 coverage_minus=7 coverage_plus=4 flanking_left=300 flanking_right=300 frequency=1.077e-01 junction_possible_overlap_registers=236 key=NC_000913__3648146__-1__NC_000913__3648320__1__58____300__300__0__0 max_left=183 max_left_minus=151 max_left_plus=183 max_min_left=117 max_min_left_minus=114 max_min_left_plus=117 max_min_right=83 max_min_right_minus=83 max_min_right_plus=58 max_pos_hash_score=474 max_right=195 max_right_minus=195 max_right_plus=191 neg_log10_pos_hash_p_value=4.4 new_junction_coverage=0.16 new_junction_read_count=12 polymorphism_frequency=1.077e-01 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.32 side_1_overlap=58 side_1_possible_overlap_registers=294 side_1_read_count=122 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.36 side_2_overlap=0 side_2_possible_overlap_registers=236 side_2_read_count=101 side_2_redundant=0 total_non_overlap_reads=11 JC 993 . NC_000913 3653230 -1 NC_000913 4497973 -1 0 alignment_overlap=1 coverage_minus=19 coverage_plus=11 flanking_left=300 flanking_right=300 frequency=2.256e-01 junction_possible_overlap_registers=293 key=NC_000913__3653230__-1__NC_000913__4497974__-1__1____300__300__1__0 max_left=292 max_left_minus=286 max_left_plus=292 max_min_left=128 max_min_left_minus=72 max_min_left_plus=128 max_min_right=139 max_min_right_minus=139 max_min_right_plus=128 max_pos_hash_score=588 max_right=294 max_right_minus=273 max_right_plus=294 neg_log10_pos_hash_p_value=2.6 new_junction_coverage=0.32 new_junction_read_count=30 polymorphism_frequency=2.256e-01 pos_hash_score=23 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.12 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=103 side_2_redundant=0 total_non_overlap_reads=30 JC 994 . NC_000913 3708466 -1 NC_000913 3708635 1 0 alignment_overlap=108 coverage_minus=15 coverage_plus=20 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=186 key=NC_000913__3708466__-1__NC_000913__3708527__1__108____300__300__0__0 max_left=186 max_left_minus=127 max_left_plus=186 max_min_left=95 max_min_left_minus=80 max_min_left_plus=95 max_min_right=93 max_min_right_minus=93 max_min_right_plus=92 max_pos_hash_score=374 max_right=189 max_right_minus=184 max_right_plus=189 neg_log10_pos_hash_p_value=1.0 new_junction_coverage=0.63 new_junction_read_count=37 polymorphism_frequency=1.000e+00 pos_hash_score=23 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=108 side_1_possible_overlap_registers=294 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.00 side_2_overlap=0 side_2_possible_overlap_registers=186 side_2_read_count=0 side_2_redundant=0 total_non_overlap_reads=35 JC 995 . NC_000913 3720633 1 NC_000913 4430711 1 0 alignment_overlap=1 coverage_minus=21 coverage_plus=28 flanking_left=300 flanking_right=300 frequency=4.720e-01 junction_possible_overlap_registers=293 key=NC_000913__3720632__1__NC_000913__4430711__1__1____300__300__0__0 max_left=294 max_left_minus=274 max_left_plus=294 max_min_left=146 max_min_left_minus=127 max_min_left_plus=146 max_min_right=146 max_min_right_minus=141 max_min_right_plus=146 max_pos_hash_score=588 max_right=289 max_right_minus=289 max_right_plus=282 neg_log10_pos_hash_p_value=1.2 new_junction_coverage=0.53 new_junction_read_count=49 polymorphism_frequency=4.720e-01 pos_hash_score=35 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.59 side_2_overlap=1 side_2_possible_overlap_registers=294 side_2_read_count=55 side_2_redundant=0 total_non_overlap_reads=49 JC 996 . NC_000913 3722075 -1 NC_000913 4430713 -1 0 alignment_overlap=1 coverage_minus=21 coverage_plus=19 flanking_left=300 flanking_right=300 frequency=4.040e-01 junction_possible_overlap_registers=293 key=NC_000913__3722075__-1__NC_000913__4430714__-1__1____300__300__0__0 max_left=297 max_left_minus=288 max_left_plus=297 max_min_left=142 max_min_left_minus=142 max_min_left_plus=141 max_min_right=141 max_min_right_minus=141 max_min_right_plus=123 max_pos_hash_score=588 max_right=287 max_right_minus=266 max_right_plus=287 neg_log10_pos_hash_p_value=1.5 new_junction_coverage=0.43 new_junction_read_count=40 polymorphism_frequency=4.040e-01 pos_hash_score=32 prediction=polymorphism side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=1 side_1_read_count=NA side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.64 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=59 side_2_redundant=0 total_non_overlap_reads=40 JC 997 . NC_000913 3727293 1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=8 flanking_left=300 flanking_right=300 frequency=9.091e-02 junction_possible_overlap_registers=294 key=NC_000913__3727293__1__NC_000913__4498181__1__0____300__300__0__1 max_left=263 max_left_minus=263 max_left_plus=237 max_min_left=92 max_min_left_minus=72 max_min_left_plus=92 max_min_right=135 max_min_right_minus=97 max_min_right_plus=135 max_pos_hash_score=590 max_right=277 max_right_minus=228 max_right_plus=277 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.13 new_junction_read_count=12 polymorphism_frequency=9.091e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.29 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=120 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=12 JC 998 . NC_000913 3764827 -1 NC_000913 3765008 1 0 alignment_overlap=12 coverage_minus=2 coverage_plus=3 flanking_left=300 flanking_right=300 frequency=5.104e-01 junction_possible_overlap_registers=282 key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0 max_left=51 max_left_minus=51 max_left_plus=51 max_min_left=51 max_min_left_minus=51 max_min_left_plus=51 max_min_right=0 max_min_right_minus=0 max_min_right_plus=0 max_pos_hash_score=566 max_right=253 max_right_minus=115 max_right_plus=253 neg_log10_pos_hash_p_value=8.4 new_junction_coverage=0.06 new_junction_read_count=5 polymorphism_frequency=5.104e-01 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW side_1_annotate_key=repeat side_1_continuation=0 side_1_coverage=NA side_1_overlap=0 side_1_read_count=NA side_1_redundant=1 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.05 side_2_overlap=12 side_2_possible_overlap_registers=294 side_2_read_count=5 side_2_redundant=0 total_non_overlap_reads=5 JC 999 . NC_000913 3822646 1 NC_000913 3822651 -1 0 alignment_overlap=0 coverage_minus=36 coverage_plus=46 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3822646__1__NC_000913__3822651__-1__0____300__300__0__0 max_left=299 max_left_minus=288 max_left_plus=299 max_min_left=146 max_min_left_minus=146 max_min_left_plus=142 max_min_right=147 max_min_right_minus=147 max_min_right_plus=145 max_pos_hash_score=590 max_right=293 max_right_minus=292 max_right_plus=293 neg_log10_pos_hash_p_value=0.3 new_junction_coverage=0.90 new_junction_read_count=83 polymorphism_frequency=9.432e-01 pos_hash_score=56 prediction=consensus side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.04 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=4 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.06 side_2_overlap=0 side_2_possible_overlap_registers=294 side_2_read_count=6 side_2_redundant=0 total_non_overlap_reads=82 JC 1000 . NC_000913 3938772 -1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=44 coverage_plus=47 flanking_left=300 flanking_right=300 frequency=1 junction_possible_overlap_registers=294 key=NC_000913__3938772__-1__NC_000913__4498181__1__0____300__300__0__1 max_left=299 max_left_minus=281 max_left_plus=299 max_min_left=147 max_min_left_minus=142 max_min_left_plus=147 max_min_right=148 max_min_right_minus=148 max_min_right_plus=137 max_pos_hash_score=590 max_right=297 max_right_minus=297 max_right_plus=277 neg_log10_pos_hash_p_value=0.2 new_junction_coverage=1.01 new_junction_read_count=94 polymorphism_frequency=1.000e+00 pos_hash_score=62 prediction=consensus read_count_offset=5 side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.00 side_1_overlap=0 side_1_possible_overlap_registers=289 side_1_read_count=0 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=91 JC 1001 . NC_000913 3960103 -1 NC_000913 4498181 1 0 alignment_overlap=0 coverage_minus=4 coverage_plus=16 flanking_left=300 flanking_right=300 frequency=1.094e-01 junction_possible_overlap_registers=294 key=NC_000913__3960103__-1__NC_000913__4498181__1__0____300__300__0__1 max_left=295 max_left_minus=236 max_left_plus=295 max_min_left=135 max_min_left_minus=60 max_min_left_plus=135 max_min_right=135 max_min_right_minus=64 max_min_right_plus=135 max_pos_hash_score=590 max_right=252 max_right_minus=252 max_right_plus=218 neg_log10_pos_hash_p_value=4.6 new_junction_coverage=0.23 new_junction_read_count=21 polymorphism_frequency=1.094e-01 pos_hash_score=13 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.84 side_1_overlap=0 side_1_possible_overlap_registers=294 side_1_read_count=171 side_1_redundant=0 side_2_annotate_key=repeat side_2_continuation=0 side_2_coverage=NA side_2_overlap=0 side_2_possible_overlap_registers=NA side_2_read_count=NA side_2_redundant=1 total_non_overlap_reads=20 JC 1002 . NC_000913 3983657 -1 NC_000913 3983773 1 0 alignment_overlap=11 coverage_minus=1 coverage_plus=2 flanking_left=300 flanking_right=300 frequency=1.837e-02 junction_possible_overlap_registers=283 key=NC_000913__3983657__-1__NC_000913__3983762__1__11____300__300__0__0 max_left=236 max_left_minus=236 max_left_plus=199 max_min_left=0 max_min_left_minus=0 max_min_left_plus=0 max_min_right=104 max_min_right_minus=53 max_min_right_plus=104 max_pos_hash_score=568 max_right=104 max_right_minus=53 max_right_plus=104 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=1.837e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.82 side_1_overlap=11 side_1_possible_overlap_registers=294 side_1_read_count=169 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.77 side_2_overlap=0 side_2_possible_overlap_registers=283 side_2_read_count=158 side_2_redundant=0 total_non_overlap_reads=3 JC 1003 . NC_000913 4300864 -1 NC_000913 4301287 1 0 alignment_overlap=9 coverage_minus=2 coverage_plus=1 flanking_left=300 flanking_right=300 frequency=4.314e-02 junction_possible_overlap_registers=285 key=NC_000913__4300864__-1__NC_000913__4301278__1__9____300__300__0__0 max_left=97 max_left_minus=97 max_left_plus=39 max_min_left=39 max_min_left_minus=39 max_min_left_plus=39 max_min_right=27 max_min_right_minus=27 max_min_right_plus=0 max_pos_hash_score=572 max_right=98 max_right_minus=98 max_right_plus=98 neg_log10_pos_hash_p_value=8.5 new_junction_coverage=0.03 new_junction_read_count=3 polymorphism_frequency=4.314e-02 pos_hash_score=3 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=0.68 side_1_overlap=9 side_1_possible_overlap_registers=294 side_1_read_count=63 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=0.80 side_2_overlap=0 side_2_possible_overlap_registers=285 side_2_read_count=72 side_2_redundant=0 total_non_overlap_reads=3 JC 1004 . NC_000913 4326959 -1 NC_000913 4326966 1 0 alignment_overlap=1 coverage_minus=7 coverage_plus=6 flanking_left=300 flanking_right=300 frequency=7.867e-02 junction_possible_overlap_registers=293 key=NC_000913__4326959__-1__NC_000913__4326965__1__1____300__300__0__0 max_left=271 max_left_minus=271 max_left_plus=191 max_min_left=119 max_min_left_minus=0 max_min_left_plus=119 max_min_right=140 max_min_right_minus=140 max_min_right_plus=108 max_pos_hash_score=588 max_right=195 max_right_minus=140 max_right_plus=195 neg_log10_pos_hash_p_value=5.5 new_junction_coverage=0.14 new_junction_read_count=13 polymorphism_frequency=7.867e-02 pos_hash_score=10 prediction=polymorphism reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF side_1_annotate_key=gene side_1_continuation=0 side_1_coverage=1.64 side_1_overlap=1 side_1_possible_overlap_registers=294 side_1_read_count=152 side_1_redundant=0 side_2_annotate_key=gene side_2_continuation=0 side_2_coverage=1.66 side_2_overlap=0 side_2_possible_overlap_registers=293 side_2_read_count=153 side_2_redundant=0 total_non_overlap_reads=13 UN 1005 . NC_000913 15650 15650 UN 1006 . NC_000913 15653 15655 UN 1007 . NC_000913 15657 15658 UN 1008 . NC_000913 15660 15660 UN 1009 . NC_000913 15662 16491 UN 1010 . NC_000913 16493 16493 UN 1011 . NC_000913 20079 20286 UN 1012 . NC_000913 224010 224509 UN 1013 . NC_000913 225169 225310 UN 1014 . NC_000913 225312 225313 UN 1015 . NC_000913 225317 225317 UN 1016 . NC_000913 227246 227248 UN 1017 . NC_000913 227251 228414 UN 1018 . NC_000913 257908 258683 UN 1019 . NC_000913 270806 271035 UN 1020 . NC_000913 274243 274869 UN 1021 . NC_000913 275509 372748 UN 1022 . NC_000913 381526 382325 UN 1023 . NC_000913 382333 382333 UN 1024 . NC_000913 391971 391971 UN 1025 . NC_000913 391973 392694 UN 1026 . NC_000913 526105 526105 UN 1027 . NC_000913 526107 526448 UN 1028 . NC_000913 526450 526451 UN 1029 . NC_000913 567055 567792 UN 1030 . NC_000913 574861 575506 UN 1031 . NC_000913 608270 608271 UN 1032 . NC_000913 608276 609076 UN 1033 . NC_000913 609079 609079 UN 1034 . 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