mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 90 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,540 | 0 | T | C | 70.6% | 52.7 / 15.0 | 35 | N19D (AAC→GAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,164 | 0 | C | G | 61.5% | 6.6 / 11.6 | 13 | A39G (GCC→GGC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,636,068 | 0 | T | C | 57.9% | ‑5.9 / 12.7 | 19 | K100K (AAA→AAG) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 1,636,074 | 0 | C | T | 57.9% | ‑5.8 / 17.6 | 19 | E98E (GAG→GAA) | nohA | putative prophage DNA‑packaging protein NohA |
| * | NC_000913 | 579,502 | 0 | A | G | 57.1% | 12.9 / 27.6 | 28 | N31N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,204 | 0 | C | T | 57.1% | 0.3 / 10.0 | 14 | D52D (GAC→GAT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,207 | 0 | T | G | 57.1% | 2.5 / 11.3 | 14 | V53V (GTT→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,160 | 0 | C | G | 56.2% | 2.9 / 20.8 | 16 | L38V (CTG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 580,302 | 0 | C | T | 55.6% | ‑3.8 / 42.2 | 37 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,429,069 | 0 | T | A | 55.6% | ‑4.0 / 19.8 | 21 | G7G (GGT→GGA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 578,811 | 0 | T | G | 55.0% | ‑4.9 / 16.1 | 20 | Q28P (CAG→CCG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 566,245 | 0 | G | A | 53.8% | ‑5.1 / 12.3 | 13 | intergenic (‑267/‑439) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 1,429,515 | 0 | G | A | 53.8% | ‑6.1 / 10.8 | 13 | S156N (AGC→AAC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,767 | 0 | C | T | 53.8% | ‑5.0 / 12.8 | 13 | A240V (GCG→GTG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,780 | 0 | A | G | 53.8% | 1.3 / 10.5 | 13 | E244E (GAA→GAG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,783 | 0 | G | A | 53.8% | ‑3.4 / 10.5 | 13 | A245A (GCG→GCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,651 | 0 | C | T | 51.7% | 0.4 / 37.3 | 29 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 578,809 | 0 | T | C | 50.0% | ‑5.5 / 18.3 | 20 | T29A (ACA→GCA) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 578,831 | 0 | T | C | 50.0% | 1.4 / 24.4 | 26 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 1,429,114 | 0 | C | T | 50.0% | ‑5.5 / 17.8 | 19 | I22I (ATC→ATT) | stfR | putative prophage side tail fiber protein StfR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 456377 = | 23 (1.620) | 4 (0.280) +A |
3/308 | 1.1 | 16.8% | coding (1245/1299 nt) | tig | trigger factor |
| ? | NC_000913 | 527968 = | 17 (1.200) | intergenic (+19/+1677) | ybbC/ylbG | PF15631 family protein YbbC/putative DNA‑binding transcriptional regulator YlbG | |||||