| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 566,245 | 0 | G | A | 53.8% | ‑5.1 / 12.3 | 13 | intergenic (‑267/‑439) | intD/renD | putative integrase/protein RenD |
| Reads supporting (aligned to +/- strand): ref base G (4/2); new base A (2/5); total (6/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGT > NC_000913/566009‑566451 | cTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCCTTGCTCCCCAAATACAAAACCAATTTCAGCCCGTGCCTCGTCCATTTTTTTGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGtt > 1:319264/1‑251 (MQ=255) nagaCTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGACGTACCCGGATATTATCGTGTGGATGCGTCATCGACATTGCTCCCCAACTACAAAACCAATTTCAGCCAGTGCCTCGCCCATTTTTTCGATGAAATCCGGACCCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACAAGGAATCtttt > 1:31084/2‑251 (MQ=255) cgaaagtgattgcgcctACCCGGATATTATCGTGAGGATGCGTCATCGCAATTGCTCCACAAATACAAAACCAATTTAAGCAAGTGCCTCGTCCATTTTTTAGATGAACTCCGGCACGATCTAGTAAAAACTCGACATGTACTTTTAATACCGCTCAATCACGCCATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGtt > 1:242095/17‑204 (MQ=255) ggATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGGTGAACTCCGGCACTATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAACGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTCGCAAAGTACCAGGCATGTTTTCTCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtggc < 1:290849/244‑4 (MQ=255) cGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGGGCCTCGTCCATGTGTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTGTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTgn < 1:35079/166‑2 (MQ=255) aTCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCAATTTTTTCGATGAACTACGGCACGATCTCGTCAAAACTCGACATGTACTTTTCATCCCGCTCAATCCCGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGc > 1:300101/1‑251 (MQ=255) ccAATTTCAGCCAGTGCCTCGTCCATTTTATCGATGAACTCAGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTAAATCACGGCATAATGCAGGCCTTCACGCTTCGTGCGCGGGTCATAGATGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTGCTGCACCTGGGACATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAACTCCCGGGAGGt > 1:100358/1‑251 (MQ=255) aaTTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCCTGCAATTTTCATTCCGCTCAATCACGCCATAATGCAGGCATTCACGCTTCATGCGCGGGTCATAGTTGGCAACGTCCCCGGCATCTTTTCGCGTCACCCACCTGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg > 1:186575/1‑235 (MQ=255) gCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtgg < 1:103940/193‑3 (MQ=255) cGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTGTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATc < 1:132252/250‑1 (MQ=255) aTGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGtn < 1:85010/129‑2 (MQ=255) cATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggt < 1:25037/250‑1 (MQ=255) cAATCTCGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcg < 1:186822/73‑1 (MQ=255) | CTCACCTGGACAGTATGCAGCGGAGACTGAAGCGCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGT > NC_000913/566009‑566451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |