New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	456377 =	23 (1.620)	4 (0.280) +A	3/308	1.1	16.8%	coding (1245/1299 nt)	tig	trigger factor
	?	NC_000913	527968 =	17 (1.200)					intergenic (+19/+1677)	ybbC/ylbG	PF15631 family protein YbbC/putative DNA‑binding transcriptional regulator YlbG
Rejected: Frequency below/above cutoff threshold.

AAAAATACGGTAAAAACTGAAACAATGGCGATACAATTAGCTGAAATATATGTTAGGTATCGCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGT  >  NC_000913/527719‑528179                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                    atggacggattatcagctagtccctgtgttatgggtacggcatcaccatatttcaagcattcaatcttttgttgttacgctaacaccgaaagaggcttttcacactgttccatgcaaaattcatgacgaaaaaaagcccaccgcctggtggtgacggggctttgggcgaatttggcgcgttgtgctgcgtaaattactcctactggttcatcagctcgttgaaagtggtttctttttcagtcactttcac                                                                                                                                                                                                                     <  1:322589‑M2/1‑1 (MQ=255)                            gCGATACAATTAGCTGAAATATATGTTAGGTATCGCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCgggg                                                                                                                                                                                           <  1:18553/249‑1 (MQ=255)                                        gCTGAAATATATGTTAGGTATCGCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTgn                                                                                                                                                                             <  1:63711/251‑2 (MQ=255)                                             aaTATATGTTAGGTATCGCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATCAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTgggg                                                                                                                                                                           <  1:141457/248‑1 (MQ=255)                                                              gCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGCGCAAAGTTACCTTATGCAGTTGCGGGTGGTGTATTTATTATAGACATTAATACGAAACATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTCGCGCTGATGGATGCGGATGGAACCATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCACCCAGCTGAATGAag                                                                                                                                                          >  1:164080/1‑248 (MQ=255)                                                                tATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGTGTTGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGGATGTCCTACATAGTAAATTATGCTGGCTCTGATGGATGCGGATGGAAACAGGGCGTGGAGCGGGGAGTATGATGAGTGGGGc                                                                                                                                                                          <  1:136581/230‑1 (MQ=255)                                                                    gCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATGAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCGGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTgggg                                                                                                                                                                           <  1:148699/225‑1 (MQ=255)                                                                           naTTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCTTACATAGTAAATAATGCTGGCGCTGATGGATGCgta                                                                                                                                                                                                                  >  1:192444/2‑177 (MQ=255)                                                                               gCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCtn                                                                                                                                         <  1:79761/248‑2 (MQ=255)                                                                                                   ttcgcnnggnnncanncaaaattcatgacaaaaaaaagcncaccacctggcggtgacgggcctttgtgcnantntagcnngttntgctgcgtaanttacgcctgctggttcatcagctcgttgaaagtggtttctttttcagtnantttcaCGGATGGAAACATTGCGTGGAGCGGGNAGTATGATGAGTGGGGCAACCAGANGAATNnagngn                                                                                                                                                       >  2:241810‑M2/152‑213 (MQ=255)                                                                                                   ttcgcacggttccatgcaaaattcatgacaaaaaaaagcccaccacctggcggtgacgggcctttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggttcatcagctcgttgaaagtggtttctttttcagtcactttcaCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGc                                                                                                                                  <  1:241793‑M2/84‑1 (MQ=255)                                                                                                   ttcgcacggttcaatgcaaaattcatgacaaaaaaaagcccaccacctggcggtgacgggcctttgtgcgaatttagcgcgttatgctgcgtaaattacgcctgctggttcatcagctcgttgaaagtggtttctttttcagtcactttcaCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGc                                                                                                                                  <  1:241810‑M2/84‑1 (MQ=255)                                                                                                    nnnnnnnnnnaaNNNNNAGANAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCTTACATAGTAAATAATGCTGGCGCTGATGGATGCgta                                                                                                                                                                                                                  <  2:192444/144‑3 (MQ=255)                                                                                                                                        ggAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAACTAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGgc                                                                                                                >  1:104700/1‑216 (MQ=255)                                                                                                                                           gCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTACTAAGAAAAATGGATGTGATTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAAACCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACaaccgg                                                                          >  1:288923/1‑251 (MQ=255)                                                                                                                                                                 agggTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGAGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGATGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGATGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGc                                                    >  1:238150/2‑251 (MQ=255)                                                                                                                                                                                                                 tGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATggg    >  1:112731/1‑250 (MQ=255)                                                                                                                                                                                                                  gAATTTCCTACATAGTAAATAATGCTGGCGCGGAGGGATGCGGATGGAAACATTGCGTGGAGTGGGGAGTATGATGAGTGGGGCAACCAGGTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGGAGTATGATAAGGAGTCGGGGCTGTACTACAATCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGTATGGAg   <  1:71651/251‑1 (MQ=37)                                                                                                                                                                                                                   aaTTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGAGGGAAACATTGCGGGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGt  <  1:16523/251‑1 (MQ=255)                                                                                                                                                                                                                                               gcTGATGGATGCGGAGGGAAACATTGCGTGGGGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATg      <  1:130019/219‑1 (MQ=255)                                                                                                                                                                                                                                                 tGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGAATGATGAGTGGGGCAACCAGCTGCATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAgg                                                 >  1:127705/1‑174 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                    AAAAATACGGTAAAAACTGAAACAATGGCGATACAATTAGCTGAAATATATGTTAGGTATCGCTATGGCGAACGGATTGCAGAAGAAGAAAAACCATATTTAATTACGGAACTACCAGATAGTTGGGTTGTTGAGGGAGCAAAGTTACCTTATGAAGTTGCGGGTGGTGTATTTATTATAGAAATTAATAAGAAAAATGGATGTGTTTTGAATTTCCTACATAGTAAATAATGCTGGCGCTGATGGATGCGGATGGAAACATTGCGTGGAGCGGGGAGTATGATGAGTGGGGCAACCAGCTGAATGAAGAGAACCCGCATCACCTGCACCAGCCGTACCGGCTGCCGGGGCAGCAGTATGATAAGGAGTCGGGGCTGTACTACAACCGGAACCGGTACTACGATCCGTTGCAGGGGCGGTATATCACTCAGGACCCGATAGGGCTGGAGGGGGGATGGAGT  >  NC_000913/527719‑528179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.