New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	456377 =	23 (1.620)	4 (0.280) +A	3/308	1.1	16.8%	coding (1245/1299 nt)	tig	trigger factor
	?	NC_000913	527968 =	17 (1.200)					intergenic (+19/+1677)	ybbC/ylbG	PF15631 family protein YbbC/putative DNA‑binding transcriptional regulator YlbG
Rejected: Frequency below/above cutoff threshold.

CTGTTCGAAGAACAGGCTAAACGCCGCGTAGTTGTTGGCCTGCTGCTGGGCGAAGTTATCCGCACCAACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAGGGACTAGCTGATAATCCGTCCAT  >  NC_000913/456138‑456625                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                         ttGTTCGAAGAAAAGGCTAAACGCCGCGTAGTTGTTGGGCTGCTGCTGGGGGACGTTATCCGCAACAAAGAGCTGAAAGCTGACGAAGAGCGCGTGACAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGGTATCGAGTTCTACAGCAAAAACATAGAACTGATGGACAACATGCGCAATGTTGCTATGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAACGCGACAGTGACTg                                                                                                                                                                                                                                                >  1:143748/2‑250 (MQ=255)               ggCTAAACGCCGCGTAGTTGTTGGCCTGCTGCTGGGCGAAGTTATCCGCACCCACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGcgaaagcgaaag                                                                                                                                                                                                                                                      >  1:225177/1‑230 (MQ=255)                gCTAAACGCCGCGTAGTTGTTGGCCTGCTGCTGGGCGAAGTTATCCGCACCAACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGCAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACttt                                                                                                                                                                                                                                >  1:18347/1‑251 (MQ=255)                                   ttgGCCTGCTGCTGGGCGAAGTTATCCGCACCAACGAGATGAAAGCTGACGAAGCGCGCGCGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGCAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAGAAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAAcc                                                                                                                                                                                                               >  1:165881/1‑249 (MQ=255)                                      gCCTGCTGCTGGGCGAAGTTATCCGCACCAACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGACGAGATGGCTTCTGCGTACGAAGATACGAACGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACcagc                                                                                                                                                                                                            >  1:286822/1‑249 (MQ=255)                                             gctgGGCGAAGTTATCCGCACCAACGAGCGGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAATCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTa                                                                                                                                                                                                     <  1:119269/249‑1 (MQ=255)                                                       nttATCCGCACCAACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACgcagc                                                                                                                                                                                          >  1:191678/2‑250 (MQ=255)                                                                        ncTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATAGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGc                                                                                                                                                                        >  1:78714/2‑251 (MQ=255)                                                                         cTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAAAAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGGAAAAGAAACCACTTTCAACGCGCTGATGAACCAGCAGGCG‑AATTTACGCAGCATAAAGCGCTAAATTCGca                                                                                                                                                                       >  1:224747/1‑250 (MQ=255)                                                                           gAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGcan                                                                                                                                                                      <  1:65824/250‑2 (MQ=255)                                                                                                naaaGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGt                                                                                                                                                            >  1:35069/2‑239 (MQ=255)                                                                                                                         nnnnnnnnnnaaNNNNNGAANGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGc                                                                                                                                                                                                                        <  2:195447/144‑1 (MQ=255)                                                                                                                                     gATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGc                                                                                                                                          >  1:53175/1‑220 (MQ=255)                                                                                                                                               aagTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCATTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCCTAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGGGGCGGGCtttttttt                                                                                                                                  >  1:2885/1‑218 (MQ=255)                                                                                                                                                   tATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGATTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCctct                                                                                             >  1:305474/1‑251 (MQ=255)                                                                                                                                                        aGTTCTACAGCAAAAATAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGCAGCTGTACTGGCGAAAGCGAAAGTGACTGAGAACGCAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCACTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGACTCTTTCgg                                                                                        >  1:327513/1‑251 (MQ=255)                                                                                                                                                           gctggtgcaggtgatgcgggttctcttcattcagctggttgccccactcatcatactccccgctccacgcaatgtttccatccgtGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATTGAACCGTGCGaa                                                                                                     <  1:241810‑M1/150‑1 (MQ=255)                                                                                                                                                           gctggtgcaggtgatgcgggttctcttcattcagctggttgccccactcatcatactccccgctccacgcaatgtttccatccgtGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGaa                                                                                                     <  1:241793‑M1/150‑1 (MQ=255)                                                                                                                                                                 gCAAAAACAAAGAACTGATGGACAACATGCGAAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGt                                                                               >  1:115996/1‑251 (MQ=255)                                                                                                                                                                                ncnctnnattcntctggttgccccactcatcatactncccgctccacgcaatgtttccatccgtGAAANTNACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAANTTACGCAGCANAACNNGCTANANTNGCACAAAGGCCCGTCACCGCCAGGTGGTGNGCTTTTTTTTGTCATGAATTTTGNNTGNNNCCNNGCGaa                                                                                                     >  2:241810‑M1/65‑214 (MQ=255)                                                                                                                                                                                 gATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGATGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAACAGAAACAACTTTCAAc                                                                                                                                                                                                                            >  1:162735/1‑94 (MQ=255)                                                                                                                                                                                              cccAATGTTGCTCTTGAAGAACAGACTGTTGAAGCTGTCCGGCCGAAAGCAAAAGTGACTAAAAAAGAAACCGCTGTCAACGAGCTGATGAACCAGCAGGCGTAATTTACgca                                                                                                                                                                                            <  1:152387/111‑1 (MQ=255)                                                                                                                                                                                                        ctctGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGCAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGc                                                                                                                                          >  1:206473/1‑153 (MQ=255)                                                                                                                                                                                                                            nnnnnnnnnntGNNNNNAGCNAAAGTGACTGAAAAAGAAACCACTGTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTg                                                                                                                     <  2:191678/144‑1 (MQ=255)                                                                                                                                                                                                                                     cTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCCCTTTCACCGAGCTGATGAACCAGCAGGCGTAAttt                                                                                                                                                                                                 >  1:207930/1‑69 (MQ=255)                                                                                                                                                                                                                                     cTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGNTGATGNANCNNCANNCGCAAttt                                                                                                                                                                                                 <  2:207930/69‑1 (MQ=255)                                                                                                                                                                                                                                              gtGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGTAGGAGTAATTTACGCAGCACAACGCGCCAAATTCGCCCAAAGCCCCGTCACCACCAGGCGGTGGGCTTTTTTTCGTCATGAATTTTGCATGGAACAGTGTGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGA‑ATGCTTGAAATATGGTGATGCCGTACCCATAACACAGGGACTAGCTGATAATCCGTCCAt  <  1:322589‑M1/248‑1 (MQ=255)                                                                                                                                                                                                                                                gaaagTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGgtn                                                                                      <  1:79363/165‑2 (MQ=255)                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                         CTGTTCGAAGAACAGGCTAAACGCCGCGTAGTTGTTGGCCTGCTGCTGGGCGAAGTTATCCGCACCAACGAGCTGAAAGCTGACGAAGAGCGCGTGAAAGGCCTGATCGAAGAGATGGCTTCTGCGTACGAAGATCCGAAAGAAGTTATCGAGTTCTACAGCAAAAACAAAGAACTGATGGACAACATGCGCAATGTTGCTCTGGAAGAACAGGCTGTTGAAGCTGTACTGGCGAAAGCGAAAGTGACTGAAAAAGAAACCACTTTCAACGAGCTGATGAACCAGCAGGCGTAATTTACGCAGCATAACGCGCTAAATTCGCACAAAGGCCCGTCACCGCCAGGTGGTGGGCTTTTTTTTGTCATGAATTTTGCATGGAACCGTGCGAAAAGCCTCTTTCGGTGTTAGCGTAACAACAAAAGATTGTTATGCTTGAAATATGGTGATGCCGTACCCATAACACAGGGACTAGCTGATAATCCGTCCAT  >  NC_000913/456138‑456625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.