mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,151,630 | 0 | C | A | 54.5% | 5.8 / 16.3 | 11 | A149E (GCA→GAA) | yegJ | DUF2314 domain‑containing protein YegJ |
| * | NC_000913 | 2,434,882 | 0 | T | G | 39.5% | 58.2 / 13.6 | 39 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 1,441,236 | 0 | A | G | 34.4% | 101.8 / 20.3 | 62 | D60G (GAT→GGT) | ydbJ | DUF333 domain‑containing protein YdbJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 34.4% | 30.3 / 11.0 | 32 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 888,014 | 0 | T | G | 32.6% | 95.4 / 11.3 | 49 | noncoding (44/79 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 2,386,862 | 0 | G | A | 32.3% | 48.1 / 12.5 | 31 | intergenic (+31/‑72) | yfbL/yfbM | putative peptidase YfbL/DUF1877 domain‑containing protein YfbM |
| * | NC_000913 | 1,435,727 | 0 | G | A | 31.4% | 60.0 / 17.9 | 36 | intergenic (‑108/+33) | uspF/ompN | universal stress protein F/outer membrane porin N |
| * | NC_000913 | 4,004,132 | 0 | G | A | 30.4% | 81.3 / 11.8 | 46 | A16V (GCT→GTT) | rarD | putative transporter RarD |
| * | NC_000913 | 2,185,238 | 0 | A | G | 30.3% | 176.1 / 20.3 | 90 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 2,185,199 | 0 | T | G | 29.5% | 212.8 / 12.2 | 96 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 4,336,901 | 0 | T | A | 29.0% | 101.6 / 21.2 | 62 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 4,379,638 | 0 | G | A | 28.3% | 85.1 / 13.9 | 46 | F45F (TTC→TTT) | frdC | fumarate reductase membrane protein FrdC |
| * | NC_000913 | 3,531,440 | 0 | A | C | 27.5% | 212.4 / 10.3 | 91 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.7% | 33.0 / 14.8 | 30 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,312,117 | 0 | A | C | 26.4% | 136.0 / 10.7 | 73 | G211G (GGT→GGG) | ompC | outer membrane porin C |
| * | NC_000913 | 1,441,253 | 0 | A | G | 26.2% | 135.0 / 12.2 | 65 | M66V (ATG→GTG) | ydbJ | DUF333 domain‑containing protein YdbJ |
| * | NC_000913 | 1,174,626 | 0 | G | A | 25.5% | 92.7 / 11.1 | 47 | F180F (TTC→TTT) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 4,161,148 | 0 | G | A | 25.0% | 128.9 / 15.3 | 60 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 4,336,897 | 0 | T | C | 25.0% | 109.2 / 11.0 | 62 | G45G (GGA→GGG) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 4,488,209 | 0 | G | T | 25.0% | 122.3 / 10.6 | 57 | G298C (GGC→TGC) | lptG | lipopolysaccharide transport system protein LptG |