| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,174,626 | 0 | G | A | 25.5% | 92.7 / 11.1 | 47 | F180F (TTC→TTT) | ycfT | inner membrane protein YcfT |
| Reads supporting (aligned to +/- strand): ref base G (25/10); new base A (0/12); total (25/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.24e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCC > NC_000913/1174385‑1174876 | gTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAAcc < 1:98130/251‑1 (MQ=255)gTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAAcc < 1:238830/251‑1 (MQ=255) tGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCg < 1:31140/250‑1 (MQ=255) gCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGcc > 2:119138/1‑251 (MQ=255) nttGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTc > 2:270582/2‑251 (MQ=255) aTAAAACAGCATCATGATAACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTAATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTcagc > 2:592764/1‑250 (MQ=255) aCAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTac > 2:170656/1‑250 (MQ=255) aCAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTac > 1:396021/1‑250 (MQ=255) cAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTaca > 1:421336/1‑250 (MQ=255) aGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTacaa > 2:579843/1‑250 (MQ=255) aGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTacaa > 1:178397/1‑250 (MQ=255) cacaATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCCCCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTg > 2:388209/1‑251 (MQ=255) ncaATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTgg > 2:268645/2‑251 (MQ=255) aTACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGcc > 2:411032/1‑251 (MQ=255) ccAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAAAACGGTAAGCAAAGAAGCCATCAGCAGAGGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCAAAACCATGCGCCAAGGCTGTAATAAGGCAAATGG‑CGGATC‑ACCCTGTTCATTCCCCCCCCCGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGa < 1:246187/251‑1 (MQ=255) cAGCGACACCAGCAGCGAAATAGAAAACAACCAGCCCCCCCCCGCCAGACCGGTAAGCAAAGAAGCCATCAGCAGGTGGCGGCGCACCGCCCCCTCTTTAACCCAGGTCTTTATTGTT‑GCGCAAAACCATGCGCCAAGGCTTTAAGAAGGCAAATGG‑CGGTTC‑ACACTTTTCATCCCCCCCCACGGTGGGGA‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGAc < 1:584207/251‑1 (MQ=255) cagcGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAAttt > 2:104027/1‑251 (MQ=255) agagaaaccacccagccacctcccgCCAGAAGGGTAAGCAAAGAAGCCATCAGCAGAGGGCGGCGCAACGGCCCCTTTTTAACACAGGTCATTATTTTG‑GCGCAAACCCAGGCGCAAAGGCTGTAATAAGGCAAATTG‑CGGACC‑ACACTTTTCATCCCCCCCCCCGGGGGGGA‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATAc < 1:193043/229‑1 (MQ=255) aaaCACCCAGGCCCCGCCCGCCAGAAGGGTAAGAAAAGAAGCCACCAGCAGATGGCGGCGCACCGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAACCCAGGCGCAAAGGCTGTAATAAGCAAAATTG‑CGGATC‑ACACTGTTCATCCCCCCCCCCGGGGGGGA‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGa < 1:580808/251‑1 (MQ=255) aaaCAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACg > 2:247083/1‑250 (MQ=255) cgacccccaaaaggaaaggCAAAAAAGCCATCAGCAGATGGCGGCGCAACGGCCCCTCTTTAACACAGGTCATTATTGTG‑GCGCAAAACCACGCGCCAAGGTTGTAATAAGGAAAAGTG‑‑GGATCCACACTTTTCCTCCCCCACCACGGCGTGTG‑AACAAAAATAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATTCCACGAAATAGACAATTAAc < 2:145914/233‑1 (MQ=255) cccccccaggAACGGAAAACAAAGACGCCATAGGCAGTTGGCGGCACAACGGCCCCTCTTCAGCAAAGGTCTTTATGGTG‑GCGCAAAACCATGCGCCAAGGTTGTAATAAGG‑AAATTGGCGGATC‑CCACGGTTCTTTCCCCACCA‑GGCGTGGGGAACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAAc < 2:145910/242‑1 (MQ=255) cccAGACCGGAAACCAAAGAAGCCATCAGCAGAGGGCGGCCCAACGCCCCCCCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCAAGGGCTGTAAAAAGGCAAATTG‑CGGATC‑ACCCTGTTCATCCCCCCCCCCGGCGTGGA‑AACGAAATAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATa < 1:170656/250‑1 (MQ=255) gAACGGTAAGCAAAGAAGCCATAAGCAGATGGCGGCGCAACGGCACATCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGAGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACACGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATAACACGAAATAGACAATTAACGCATAc > 1:560031/1‑248 (MQ=255) aaCGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATAc > 2:369057/1‑247 (MQ=255) cccagcaggagggggcgccgaaaCGGCCCCTCTTAAACACAGGTCATTATTGTT‑GCGCCAAACCAGGCGCCAGGGCTATAAAAAGGAAAATGG‑CGGATC‑ACACTGTTCTCTCCCCCCCCCGGCGTGGA‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCt < 2:462508/230‑1 (MQ=255) accaggaggggggggcgcacgtgccccTCTTTAACACAGGT‑ATTATTTTTCGCGCCAACCCAGGCCCCAGGGTTGTAAAAAGG‑AAATTGGCGGATC‑CCCCTGTTCATCCCCCCCCCCGGCGTGGG‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGc < 2:560891/226‑1 (MQ=255) ggtgggcggcGAACCGGCCCCTCGTAAACACAGGTCATTATTGTT‑GCCCCAACCCTGGCCCCAAGCCTTTAAGAAGACAAATGG‑CGGATC‑ACCCTTTTCTTTCCCCCCCGCGGCGGGGA‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGat < 2:526988/247‑1 (MQ=255) accGGCCCCTCTTTACCACAGGTCATT‑TTGTTTGCGCAAACCCAGGCGCCAAGGCTGTAATAAGGAAAATTG‑CGAATC‑ACCCTTTTCATTCCCCCCCACGGCGTGGA‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAg < 1:238338/249‑1 (MQ=255) acagcactcctttaaaccatgTCATTATTGTG‑GGCCCAACCCATGCGCAGAGGCTTGAATAAGCCAAATGT‑CGGATC‑CCCCTGTTTATCCCCCACCCGGGCGGGAG‑AAAAAATTTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAgg < 2:421336/231‑1 (MQ=255) aCGGCACCTCTTTAACACAGGGCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGAAAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGatcatacccggcagg > 2:406783/1‑241 (MQ=255) gccACCTCTTTAACAAAGGTCATTATTGTC‑GCGCCAAACCATGCGCCAAGGCTGAAAAAAGGCAAATTG‑GGGATC‑ACACTTTTCATCCCCCCCCCCGGCGGGGA‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGaa < 1:568307/249‑1 (MQ=255) ccTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATAATCCCGTTCCGGAACTcc > 2:351784/1‑250 (MQ=255) tAACACAGTTCATTTTTGTT‑GCGCCAAACCATGCGCCAGGGCTGTAATAGGGCAAATGG‑GGGATC‑ACACTGTTCTTCCCCCCCCCCGGGGGGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGt < 1:579843/250‑1 (MQ=255) aaCACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCggggg > 1:320531/1‑248 (MQ=255) attGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCCGGAACTCACCGGTGGAATCGGCATAAGc > 1:492231/1‑251 (MQ=255) aaCCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCCTGCAGGAACCCACCGGTGGAATCGGCATAAGCGGCATTGGAGGc > 1:472034/1‑251 (MQ=255) aCCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAAATCACCGGGGGAATCGGCATAAACGGCATTGGAGGc > 1:491420/1‑250 (MQ=255) gCTGTAATAAGGAAAATTG‑CGGATC‑ACACTGTTCATCCCCCCCCACGGGGTGGA‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcgc < 1:411032/251‑1 (MQ=255) tataataaGGAAAATTG‑CGAATC‑CCCCTGTTCATTCCCCCCCAGGGGGGGGG‑AACGAAATTACCCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATcgcg < 2:178397/248‑1 (MQ=255) aaaaTTG‑CGGATC‑CCACTTTTAATTCCCCCCCACGGGGTGGG‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgcca < 2:55175/250‑1 (MQ=255) tG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGGTCATCCCGTGCCGGAACTCACCGGGGGAATCGGCCTAAGCGGCCATGGAGGCATTGGTTAAATCCCGCCCAGGGgccagcacc > 2:187900/1‑248 (MQ=255) acacTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAGTAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCtt > 1:164030/1‑219 (MQ=255) ttCCCCCCCGCGGCGTGGG‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTaa < 1:270582/250‑1 (MQ=255) cccACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCCCGCAGGAAATCAACGGGGGAAACGGCATAAGCGGCAATGGAGGCATTGGTTAAAACGCGCTCTGGGGCCAGCCACTGGTTCAGCGCACTTAAAgcc > 2:286949/1‑251 (MQ=255) gggg‑AACAAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGcacc < 1:369057/250‑1 (MQ=255) naaCGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCCTGCAGGAAATCCCCGGGGGAATCGGCATAAACGGCATTGGAGGGATTGCTTAAATCGCGCTCAGGTGCCAACCACTGGGTCAGCGCACTTAACGCCAGCCACTTcaccccc > 2:270261/2‑248 (MQ=255) gAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCCCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGcccc > 1:190115/1‑251 (MQ=255) | GTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACACAGGTCATTATTGTT‑GCGCCAAACCATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATC‑ACACTGTTCATTCCCCACCACGGCGTGGG‑AACGAAATTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCACCACGCCCC > NC_000913/1174385‑1174876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |