mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,554,000 | 0 | T | G | 45.0% | 23.2 / 11.7 | 41 | Y557S (TAC→TCC) | maeA | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| * | NC_000913 | 888,014 | 0 | T | G | 36.8% | 53.7 / 14.5 | 38 | noncoding (44/79 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 2,667,126 | 0 | A | C | 36.4% | 63.6 / 12.6 | 57 | Y241D (TAT→GAT) | hcaT | putative 3‑phenylpropionate transporter |
| * | NC_000913 | 2,296,764 | 0 | T | G | 35.6% | 114.1 / 11.4 | 73 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 4,606,902 | 0 | A | G | 33.8% | 123.1 / 16.2 | 77 | S267P (TCC→CCC) | rsmC | 16S rRNA m(2)G1207 methyltransferase |
| * | NC_000913 | 3,813,272 | 0 | C | T | 30.3% | 31.3 / 10.3 | 35 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 4,171,557 | 0 | C | G | 27.9% | 70.2 / 40.6 | 44 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 1,174,605 | 0 | T | C | 25.0% | 127.1 / 10.1 | 57 | G187G (GGA→GGG) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 1,466,201 | 0 | T | C | 24.0% | 137.7 / 18.8 | 82 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 3,199,935 | 0 | A | G | 23.8% | 117.7 / 10.1 | 65 | I344T (ATC→ACC) | ygiF | inorganic triphosphatase |
| * | NC_000913 | 1,174,626 | 0 | G | A | 23.6% | 114.7 / 12.6 | 55 | F180F (TTC→TTT) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 1,466,276 | 0 | T | C | 23.5% | 127.7 / 12.0 | 72 | pseudogene (885/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 3,848,333 | 0 | T | A | 22.5% | 173.0 / 14.6 | 74 | M98L (ATG→TTG) | uhpC | inner membrane protein sensing glucose‑6‑phosphate |
| * | NC_000913 | 3,946,620 | 0 | A | G | 22.4% | 145.5 / 39.6 | 76 | intergenic (+13/‑80) | rrlC/rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1411899 = | 47 (0.820) | 5 (0.100) | 5/438 | 3.6 | 11.6% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 34 (0.660) | intergenic (‑552/+227) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | = 427071 | 40 (0.690) | 3 (0.050) | 3/490 | 4.7 | 5.6% | coding (935/1128 nt) | tgt | tRNA‑guanine transglycosylase |
| ? | NC_000913 | = 2912107 | 61 (1.060) | coding (1545/2235 nt) | relA | GDP/GTP pyrophosphokinase | |||||