| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,201 | 0 | T | C | 24.0% | 137.7 / 18.8 | 82 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (31/26); new base C (10/8); total (47/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CAGATTGATGAAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGG > NC_000913/1465953‑1466449 | cAGATTGATGAAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCCCGGTATTGATATCCC‑CGGTg > 2:157353/1‑250 (MQ=255) gATTGATGAAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGAAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGAGGTCACGGTATTGATATCAC‑CGGCGAc > 1:69851/1‑250 (MQ=255) gggatgaAGCGAATAACACTGATGCCCATGAAGGGGTGAGCGAAGATGGCGCAACGAAGTGGAAATATAATCACAACGGTGAGCTGGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAgc < 2:191673/249‑1 (MQ=25) gatgaAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTTACAgcg < 2:200157/250‑1 (MQ=255) gaggaAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGGCGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAgcg < 2:277139/247‑1 (MQ=255) gaagggaagaagaccgTTGCCCATGAGGGGATGGGCGCTGACGGAGCAAAGAAGGGGCAAAACAATGACAACGGTGGGCCTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAgcgcaac < 2:36498/236‑4 (MQ=14) gaAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGAc < 2:341660/251‑1 (MQ=255) aaGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACTCGG‑GACAGCCCGACg > 1:219224/1‑251 (MQ=255) aGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATATCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACgg > 1:187302/1‑251 (MQ=255) gAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTgg > 2:253200/1‑251 (MQ=255) aaTAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACggggg > 1:371257/1‑247 (MQ=255) aaCACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGCAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATa > 1:155307/1‑250 (MQ=255) aaCACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGGGGATa > 2:280605/1‑250 (MQ=255) cTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGGATTGATATCAA‑CGGAGACAGCGCCACGGGGGAGAACa > 2:285632/1‑249 (MQ=25) gTTGCCCTTGCAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCCATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCGACGGTGGATACCAAggg > 2:52585/1‑251 (MQ=255) atGAAGGGGTGGGCGCTAATGGCGCAACGAAGTGCCAATATAACCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATg < 2:187302/250‑1 (MQ=18) gcAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATcc < 2:150806/251‑1 (MQ=255) aGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCgg > 1:375983/1‑251 (MQ=255) ggCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAggc > 1:110484/1‑249 (MQ=255) gaactagagAAGTGCCAATATAACCGAAACGGTGAGCTTGTTATTACGGGTGATGATGCCACAGCAAACAACAATGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATTGACGGTAATAACGGGAATGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTc < 2:199285/243‑1 (MQ=14) gagcagcGAAGTGGAAATCTAAGCATAGCGGTGGGCATCTTATTAAGGGTGATGATGCCACAGTAAACAACAAGGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAAGCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGAGCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTcc < 2:261853/245‑1 (MQ=11) gcAACGAAGTGGCAATATAATCACAACGGAGAGCTTGTTATTACGGGTGATAATGCCACAGTAAAATACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGATAATAACGGGAAAGAGATTCAGGACGGCGATCTGGATGTCAGCGTCGGCGCTAACGGGATTGCTATAAC‑CGGTGACAGCGTGAAGGAGGATAACACGGGGACCATGAACGTCACCGATACggcggccat > 1:437015/1‑244 (MQ=255) caacgaagacgcaaaccaacaacaACGCTGAGCCTGTGATTACGGGTGATGAAGCCACAGTAAACAACAACGGCAAAACCACCGTTGACGGCAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAtc < 2:155307/230‑2 (MQ=11) cAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATg > 1:356625/1‑251 (MQ=255) aaCGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTccgatg > 1:199285/1‑247 (MQ=255) cGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAACACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGAGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGt > 1:362257/1‑251 (MQ=255) gTGGCAATATAATCACAACGGTGAGCTTGTTNTTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATcc < 2:202875/251‑1 (MQ=255) aaTATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATc < 1:78731/251‑1 (MQ=255) tataATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGAttgg > 1:56594/1‑248 (MQ=255) ataATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCAC‑CGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGagtgac > 2:364014/1‑246 (MQ=255) aTCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGt < 1:90664/251‑1 (MQ=255) acaACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAAAGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGAGGCGGCGGTACCGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCCCCGATCNGGAGTCCATGGGTATCCAGCTCGagggcaac > 2:210726/1‑244 (MQ=17) aaCGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGAc < 2:243499/174‑1 (MQ=255) aaCGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGAc > 1:243499/1‑174 (MQ=255) aaCGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGTATTGATATCAC‑CGGAGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGACCCGGAGTCCATGGGCATCCAGAACGACGGCG‑Acc > 2:93037/1‑249 (MQ=18) aCGGTGAGCTTGTTATTACGGGTGATTATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCG‑Accag < 2:56594/251‑4 (MQ=11) ggTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGGATCCAGGTCGACGGCG‑ACCAGGc > 2:420299/1‑251 (MQ=255) ccacgctcttccgataagggTGATAATGCCACAGTAAACAACAACGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCG‑ACCAGGc < 2:123756/234‑1 (MQ=11) gAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTCGACggcgcccaggcgat > 2:141407/1‑239 (MQ=255) attaCGGGGGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGGGATGAAAGACGGCGAGCTGGATGGCGGAGGCCGCGGTCGCGGTATTGTTATTAC‑AGACGACAGCGCGGAGGGGGATAACAAGGGCACAATGACCGTCACCGCTACGGAGGCCATCGGAATCCAGATCGACGGTA‑ACAAggacaacgtgaaca > 2:387547/1‑238 (MQ=12) taCGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATTGACGGCG‑ACAAGGCCATCGTCAATAACg > 1:221319/1‑251 (MQ=255) cGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGCACCGGAGTCACTGGGTATCCAGATCGACGGTG‑ACCAGGCCATCGTCAATAACgc > 1:263511/1‑249 (MQ=18) gggTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCG‑ACCAGGccgaccgcaagagcgcac > 1:123756/1‑235 (MQ=11) aTAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCG‑ACAAGGCCGTCGTCAATAACGAAGGCg > 1:263738/1‑249 (MQ=255) aaTGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACCAGGCCGTCGTCAATAACGAAGGCgag > 1:323655/1‑249 (MQ=255) gaaaaCAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAAGCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCAc < 2:441502/249‑1 (MQ=255) aacaaTGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAGTAACGGGAAAGGGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGCCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGGG‑ACAAGGCCATCGTAAATGACGAAGGCGAAAGCCACATCACCAAc > 2:67778/1‑249 (MQ=18) accaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcac < 2:356625/251‑1 (MQ=255) accaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGAATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcac < 1:157353/251‑1 (MQ=255) accaccGTGTACGGTAAAGATGCCACCGGTACGGAAATCAACTGTAATAACGGGAAAGTGATTCAGGGCGGCGATCTGGCTGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCGCCATGACCGGCACCGATCCGGAGTCCATGGGTAGCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcac < 2:14973/251‑1 (MQ=18) ccaccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:316790/251‑1 (MQ=255) ccGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAg < 1:334248/251‑1 (MQ=255) cGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGCTGTGGATGTCAGCGGCGGCAGTCACGGTATTGATATCAG‑CGGGGACAGCCCTACGGAGGATAACAAGGGCACCCAGACCGTCACCGATCCGGAGTCCATAGGTATCACGACTGACGGGGGACA‑GGCGGTCGTAAACAACGAAGGCGAGCGCACCATCACCAACGGTggcaccggcaacc > 2:454790/1‑245 (MQ=2) tGACGGTAAAGAGTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAtt < 2:291173/250‑1 (MQ=255) gACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTCGACGGCG‑ACACGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCGAGATTa > 1:162219/1‑250 (MQ=255) aaaGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGAGACGGAGCGCCGGCGGCTGACATCGGGACCATGACCGTCACCGATCCGGGGTCCATGGGTGTCCAAATCGACGGCG‑ACAAGACCATCGTCAATAACGCATGCGAGAGAACCCTCACCAACGGTGGGACCGGCACCCCGGTTAAtag > 1:136274/1‑246 (MQ=17) aGATTCCGCCGGTACGGAAATCAACGGTAATAACGGGTAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGTCGAGAGTACCATCACCAACGGTGGCTCCGGCACCCAGATTAATGGtgatg < 1:253200/251‑1 (MQ=255) tCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTCGACGGCG‑ACAAGGCCGTCGTTAATAACGAAGGCGAGAGCGCCATCACCAAAGGTGGGAACGGCACCCAGATTAACGCTAATGACGc > 1:85275/1‑251 (MQ=14) cACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGcc > 1:357686/1‑250 (MQ=255) ccGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg < 2:192945/251‑1 (MQ=255) ggAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGCGACAGCGCGGCGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaac > 1:52795/1‑250 (MQ=255) gAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATGGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCGCCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCATCGGTTGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaacaa < 1:384871/251‑1 (MQ=255) aCGGTAATAACGGGAAAGTGATTCAGGACGGCGACCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGc > 1:48264/1‑251 (MQ=255) gTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAaacaa > 1:113370/1‑241 (MQ=255) aaCGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGCCGGGG‑ACCAGGCCGTCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAGGGTGATGACGCCCCGGCCCACAACAACGGCAAAacacc > 2:415294/1‑248 (MQ=17) gtaacgTGATGCAGGACGTCGATGTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGGGACGGTGGATAACAAGGGCACCATGACCGTCACCGGGCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAATAATGGTGATGACGCCACGGCAAACAACAACGGCAAAacctcagtt < 2:72037/246‑7 (MQ=18) ggAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaaaatccggtg > 1:104612/1‑243 (MQ=255) gAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACCAGGGCACCATGACCGTCACCGTTCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAACGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCCAACAACAACGGCAAAACCACCGTTg > 1:422328/1‑251 (MQ=255) aGGACGGCGAGCTGGGTGGCAGCGGCGGCGGTCACGGTATTGATAGCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGTACCAGGACCGTCACCGATCCGGAGTCCATAGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGTCAAAACCACCGTTGACGGCAAGGAt < 2:69851/251‑1 (MQ=21) gATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCAc > 2:43913/1‑86 (MQ=40) aTCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGGGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGAAAGGATTCCACCGGt > 1:307778/1‑251 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCCC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCGGTCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt < 2:48264/247‑1 (MQ=255) ggATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGCGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg < 1:91270/251‑1 (MQ=255) gATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGa < 1:67778/251‑1 (MQ=255) gcAGCGGCGGTGGTGACGGTATTGATAGCAC‑CGGTGCCCGCGAGACGGTGGATAACAAGGGGACCATGACCGTCACCGATCCGGAGTCCATGGGTAAACAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCCCCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATc < 2:357777/250‑1 (MQ=18) gcggcggcgGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCGCCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAc < 1:130797/251‑1 (MQ=255) cggTCACGGTATTGATATCAC‑CGGTGACATCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaata < 1:359680/251‑1 (MQ=255) tCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTCGACGGCG‑ACAAGGCCGTCGTCAATAACGAAGGCGAGAGCACCATCACCAACGTCGGCAGCGGGTCGCAGATTGAAGGGGAGGACGCCACGGCGGACAACGACGCAAAAAACACCGCTGACGGCAAGGACTCCACCGGGCCGGAAATCAACGGTAATAACg > 2:253627/1‑251 (MQ=14) tGATATCTC‑CGGAGAACGCGCGAAGATGGATGGCAAGGGCACCACGACTATCCCCGATCCGGAGGACATGGGGATCAAGATCGATGGCC‑ACAAGGCCATCGTCAATGACGAAGGCGAGAGCACCCTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGtt < 1:252791/250‑1 (MQ=18) atCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCG‑ACCAGGCCATCGTCCATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACgggaaggtgattc > 2:194193/1‑239 (MQ=14) tCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGCG‑ACAAGGCAGTGGTCACTAACGAAGGCGAGAGCCCCATCACCAACGGTGGCACCGGTCCGCTGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTc > 1:272049/1‑249 (MQ=17) ggTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCACCGGTGGCACCGGCACCCAGCTTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACgg > 1:23947/1‑251 (MQ=255) | CAGATTGATGAAGCGAATAACACTGTTGCCCTTGAAGGGGTGAGCGCAGATGGCGCAACGAAGTGGCAATATAATCACAACGGTGAGCTTGTTATTACGGGTGATAATGCCACAGTAAACAACAATGGCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAC‑CGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTG‑ACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGG > NC_000913/1465953‑1466449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |