Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,848,333 | 0 | T | A | 22.5% | 173.0 / 14.6 | 74 | M98L (ATG→TTG) | uhpC | inner membrane protein sensing glucose‑6‑phosphate |
Reads supporting (aligned to +/- strand): ref base T (36/19); new base A (0/16); total (37/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.27e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
ATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCAATTTCATATTT > NC_000913/3848085‑3848576 | aTGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATa > 1:297715/1‑250 (MQ=255) gcagcgcagcCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATaaa > 1:92829/1‑250 (MQ=255) gaagcCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGAGGTTATGCGCCGTGTCCCATAATGCCCACCACCCGCCGCGCTCGGTACGTGAATACCATGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACg < 1:440430/249‑1 (MQ=255) gcCGTTGCCATAACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGc < 1:202560/251‑1 (MQ=255) ccGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAACAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCACAAAATAACGGGc > 2:126128/1‑250 (MQ=255) cATCACAATGGTAATGAGTGAGCCGCCGACGTTATGCGCCGGGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGc < 1:200561/251‑1 (MQ=255) caaggggAATGAGTGCCCCGCCGACGTGAGGCGCCGGGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATCCCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑TCGGCGATAAG‑CCCTAGCCCCATAAAATAACGGGCATTTG‑AGCGATC‑g < 2:120995/247‑1 (MQ=255) tGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTg > 1:123426/1‑251 (MQ=255) ggggaatggttccgccgcCGACGTTATGCGCCTTGTCCCATAAGGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGGTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTTGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GAGAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑TGCTATC‑GCTg < 2:121504/239‑1 (MQ=255) atgggTGCCCCGCCGACGTTAGGCCCCGGGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑t < 2:420416/247‑1 (MQ=255) gcgcCCCCGACGTTAGGCGCCTTGTTCCAAAATGCCACCCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGGCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGga < 2:120888/251‑1 (MQ=255) gccgACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACa > 2:142192/1‑250 (MQ=255) ggtaggcgcCGTGTTCCATAATGCCCCCCATCCGCCGCGCTCGGTACGTGAAGACCAGGCCGTTAACAGACGCGCACACACC‑GGGGAACCCCAGCCCTGGAAAAAGGCGTTCAGCCCCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAATAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTGTCCCCAGAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCg < 2:135019/246‑1 (MQ=255) gcgcCTTGTTCCATAACGCCCCCCAACCGCNGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑acac < 2:230678/250‑1 (MQ=255) gcgcCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACg > 1:350504/1‑251 (MQ=255) cccaaaatcccccccaACCGCCGCCCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCCCCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTa < 2:180556/238‑1 (MQ=255) aacgCCCACCACCCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGTGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTa < 2:300073/248‑1 (MQ=255) ccaccaACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GTTGAACCCCACCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGTA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATCACGGGCATTTG‑AGCGGTC‑GCTGACAC‑TGCCGGAG‑ACAAACTTCG‑GCCCGCCATAGGTACTGTAAAAcc > 2:181699/1‑250 (MQ=255) caccaACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGCAAAAc > 1:417638/1‑249 (MQ=255) aCCGCCGCGCTCGGTACGTGAATACCAGGCCGTGAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAACAGGCGTTAAGCACCCAGAGCACGGCAAACGCAC‑ATAGCGACGCCGGGAA‑GCCACAAAGAATGTT‑GATAATGCCC‑GGGGCGATAAG‑CACTATACCCATAAACTAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑AAAAACTTCG‑ACACGCCATAGGTAGTGTAAAACAGGGTCg > 2:200405/1‑251 (MQ=255) gccgcGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCt > 2:345615/1‑250 (MQ=255) gTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGat > 1:405161/1‑251 (MQ=255) aaTACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCgat > 1:408143/1‑248 (MQ=255) atcccAGGCCGTTAACAGACTCGC‑CACCCCCGGTGACCCCCAGCCCGGGAAAAAGGCGTGCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGACATCGCTAc < 2:322462/248‑1 (MQ=255) aTACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTAc > 2:22327/1‑251 (MQ=255) ccAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGc > 2:143220/1‑251 (MQ=255) gCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAg < 1:451559/251‑1 (MQ=255) cacccgcc‑GGGGAACCCCGGCCCGGGAAAAGGGGGTTCAGCACCGGGAGCGCGGCAACCCCCC‑AGGGGGACGTCGAGAA‑GCCAAACAGAGGGTG‑GAAAAGGCCC‑GGGGCGATAGG‑CCCAACCCCCAAAAAAAAACGGGCTTTGG‑GGGGATC‑GTGGACAG‑GGCCGGAG‑ACAAGCTGCG‑CCACGCAATAGGAAATGTAAAACAGGGTCGCGAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAgg < 2:42114/245‑1 (MQ=255) cacacC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCg < 1:139588/175‑1 (MQ=255) cacacC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCg > 2:139588/1‑175 (MQ=255) ggttGAACCCCACCCATGGAAAAAGGCGTTACGCACCAAGACCACG‑CAAACCCCCCATAGCGACGTCGAAAA‑GCCAAAAAGA‑TGTTAGAAAAGGCCG‑GTGGCGAAAAG‑CCCTACCCCAAAAAAATATCGGGCTTTTG‑CGCGAGC‑GCTGACAA‑GGCCGGAG‑ACAACCTCCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGGGAACGCCGTTAGCAAGGATTTCTg < 2:92829/248‑1 (MQ=255) aacccccAGCCCTGGAAAAAGGCGTTCAGCACCCAGACCACGCCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAAAATGTG‑GATAATGCCC‑GTGGCGAAAAG‑CCCTATCCCCAAAAAAAAACGGGCATTTG‑AGCAATC‑GCTGAAAA‑TGCCGGAG‑ACAACCTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTAc < 1:257060/248‑1 (MQ=255) ccccAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTAcggc > 1:410604/1‑251 (MQ=255) cccAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTTGNCACGCCGTTATCAAGGATTTCTGGTAcggcg > 2:220898/1‑251 (MQ=255) cccACCCCTGGAAAAGGGCTTTCAGCCCCCAGAGCACGGCAAACGCCC‑ATAGCGCCGTCGAGAA‑GCCAAACAGAATGTT‑GATAAGGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATACCGGGCATTTG‑AGCGACC‑GCTGACAT‑GGCCGGAG‑AAAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTAcggcg < 1:440367/251‑1 (MQ=255) ccAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTAcggcgg > 1:10561/1‑251 (MQ=255) gCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACCGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGgcggcgg > 2:151791/1‑250 (MQ=255) cccTGGAAAAAGCCGTTTGGCACCCAGAGCACGGAAAACGCCC‑ATAGCGGCGACGAGAA‑GCCAAACAGAATGTT‑AATAAGGCCC‑GTGGCGAAAAG‑CCCTACCCCAATAAAAAACCGGTCATTTG‑AGCGAGC‑GCTGAAAA‑TCCCGGAG‑ACAA‑CGTCGGACACGCCAGAGGTAATGTAAAACAGGGCCGCTAACAGGCCGATATCGCTCCGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGtt < 1:71522/251‑1 (MQ=255) tGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTaa > 2:338134/1‑250 (MQ=255) ggAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCAAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCCAGGATTTCTGGTACggcggcagtaaa > 2:462880/1‑244 (MQ=255) ggAAAAAGACGTTCACCCCCCAGAGCACGCCAAACCCCT‑ATAGCGCCGTCGAAAC‑CCCAAACAGAATGTT‑GATAATGCCC‑GGGGCAATAAG‑CCCCTTCCCCAAAAAAAAACGGGCATTTG‑AGCGATC‑GCTGACAG‑TCCGGGAA‑ACAAACTCCG‑ACACGCCATGGGTAATGTAAAACAGGGTCGCTAACAGGCCGTTACCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTaaaa < 1:296756/251‑1 (MQ=255) aaggagttcagcccccaaacaccgccAAACGCCC‑ATACCCACGTC‑AGAAACCCAAACGGAATTTG‑GATAATCCCC‑TTGCCGATAAG‑CCCTATCCCCATAAAAAAAGGGGCTTTTG‑GGCGACC‑TCTGACAT‑TGCCGGAG‑ACAATCTTCG‑ACACGCCATTGGTAATGTAAAACAGGTTCGCTAACAGGCCGATTTCCCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCTGCGTTAAAACtttt < 1:221389/226‑1 (MQ=255) cgtccAGCACCCAGAGAACGCCAAACGCCA‑ATAGCGCCGTCGAGAA‑GCAAAAAAAAATTTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCAAAAAAAAAACGGGCTTTGG‑AGCAATC‑GTTAACAA‑GGCCGGAA‑ACAAATTACG‑ACACCCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTCCGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCcgc < 1:252868/247‑1 (MQ=255) gTTCAGCACCCAGAGCCCGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATTTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAACCTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCcgcg < 1:112785/251‑1 (MQ=255) aGCACCCAGAGCACGGCAAACGCCC‑ATGGCGACGTCGAAAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCAAAAAATAACGGGCATTTG‑AGCGATC‑GCTGAAAA‑TGCCGGAG‑ACAACCTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGaa < 1:26036/251‑1 (MQ=255) aGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGa > 1:101289/1‑250 (MQ=255) aGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGa > 1:137093/1‑250 (MQ=255) cACCAAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCAAAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGt < 1:115391/251‑1 (MQ=255) aCCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGCGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGt > 1:80085/1‑250 (MQ=255) cGGCAATCGCCA‑ATAGCGAGGTCGAGAA‑GCCAAACAGAATGTG‑GATAAGGCCC‑GTGGCGATAAG‑CCCTACCCCCAAAAAATAACGGGCATTTG‑AGCGATC‑GCTGAAAA‑GGCGGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGcgcg < 1:383549/251‑1 (MQ=255) cGGCAAACGCCA‑ATAGCGACGTCGAGAA‑GACAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGCG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGcgcg > 1:129191/1‑251 (MQ=255) ggCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTCTCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGCG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACCGGACGATATCGCTACGGCTGAGCACGCCGTTCGCAAGGATTTCTGGAACGGCGGCGTTAAAACTTTTCAGTCTGAAGGAAAACacggcgt > 2:306012/1‑245 (MQ=255) aCGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAAccc > 1:21624/1‑251 (MQ=255) aCGCCC‑ATAGCGACGTCGAGAA‑CCCAAACAAAATGTT‑GAAAATGCCC‑GTGGCGATAAG‑CCCTATCCCCAAAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAAGGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAAccc < 1:126128/251‑1 (MQ=255) ccatagggaggtggacaacccAAACAGAATGTT‑GATA‑TGCCCCGGGGCGTAAAC‑CCCTATCCCCA‑AAAAAAACCGGCATTTGGAGCGTCC‑GCTGTCAC‑TGCGGGAA‑ACAATTTTGA‑ACACGCCTAAGGTAATGTAAAGCAGGGTCGCTGACAGGCCGATACCGCTACGGATGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACccagcc < 1:365474/232‑1 (MQ=255) cGAGAT‑GCAAAACAGAATGTT‑GAAAATGCCC‑GGGGGGATAAG‑CCCTATCCCCATAAAAAAACGGGCATTTG‑AGCGAGC‑GCTAACAA‑GGCGGGAG‑ACAAACTTCG‑ACAGTCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAGACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTcagc < 1:257885/250‑1 (MQ=255) agaA‑GCCAAACAGAATTTT‑AATAATGCCC‑GTGGCGATAAC‑CCCTATCCCCAAAAAAAACCGGGCATTTG‑AGCAATC‑GCTGACAA‑TCCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGa < 1:464700/251‑1 (MQ=255) aa‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATTGTCAGCAGAat > 2:76309/1‑251 (MQ=255) aaaCAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGCAGTAAAACAGCGCGTAACCCCGCCAGATGGTCAGCAGAATATGcc > 1:416365/1‑251 (MQ=255) aacaaaaggTT‑GATAATGCCC‑GTGGCG‑TAAGGCCCTATCCCCAAAAAATAACGGG‑ATTTGGAGCGACC‑TCGGCCAA‑TGCCGGAG‑ACAACCTCCG‑ACACGCCATAGGTAATGTAAAACAGGGTGCCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACGTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCg < 2:309307/243‑1 (MQ=255) aCAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCAATAAAATAACGGGCATTTG‑AGCGATC‑GCTGAAAA‑TGCAGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGATGAGCACGCCGTTAGCAAGGATTTATGGTACGGCGGCGATAAAACTTTTCCGCGGGAAGTAAAAAAGCGCGTAAACCAGCCAGATGGTCAGGAGAATATgacg > 1:292631/1‑247 (MQ=255) cAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGAATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTACTGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGGTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAAAATGCCGa > 2:408102/1‑250 (MQ=255) aaTGTT‑GATAATGCCA‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCCGACAGAAGGTCCGCGGAATATGCCGACGcc > 1:231404/1‑251 (MQ=255) aTAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAACACTTTTCCGCGTGAAGTAAAAAAGCGCTTAACCCCGCCAGATGGTCAGCAGAATATGCCGACGACAGGAGCg > 2:418011/1‑251 (MQ=255) aaTGCCC‑GTGGCGATACG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACACACTTCG‑ACACGCCATCGGGAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGCTTTCTGGTACGGCGGCGGTAAAACTTTTCCGCGGGAAGGAAAACAGCGCGTAACCCACCCGAATGGTCAGCCGAATTAGCCGACCCCAGTAgagc > 2:24274/1‑247 (MQ=255) aTGCCC‑GTGGCGAAAAG‑CCCTATCCCCAAAAAAAACCGGGCATGTG‑AGCGATC‑GCGGACAA‑TGCCGGAG‑ACAACCTCCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATa < 2:123426/251‑1 (MQ=255) gCCC‑GTGGCGAAAAG‑CCCTCTCCCCAAAAAATAACGGTCATTTG‑AG‑GATCCGCTGA‑AA‑TGCCCGAGGACAACCGTCA‑CCCCGCCATAGGAAATGAAAAACAGGGTCGCTAACAGGGCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTTGTACGGCGGCGTTAAAACTTTTCCGCGTGAATTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAg < 1:411774/250‑1 (MQ=255) aTAAG‑CC‑TATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGGAACCCAACCAGATGGTCACCAGAATATGACGACGCCAGTAGCGATAGCGGGCAtaactt > 2:265271/1‑246 (MQ=255) aaaG‑CCCAATCCCCAAAAAAAAACGGCCTTTTG‑AGCGACC‑GCTGCCAA‑GGCCGGAG‑ACAACCTTCG‑CCCCGCCATAGGTAATGTAAAACAGGGTCGCAAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCAAtt < 1:59718/250‑1 (MQ=255) aaaccccgaTCCCCAAAAAATAACGGCAATTTG‑AGCGATC‑GCGGACAA‑GGCCGGAA‑AAAAATTGCG‑ACACGCCATAGGTAAGGTAAAACAGGGTCGCTAAGAGGCCGATACCGCTCCGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCAAtt < 1:372494/243‑1 (MQ=255) aG‑CCCTATCCCCAAAAAATAACGGGCATTTG‑AGCGACC‑GCTGACAA‑TGCCGGAG‑ACAACCTTCG‑ACACGCCATAGGTAATGTAAAACAGGTTCGCTAACAGGCCGATATCGCTCCGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCTATAGCGGGCATCAATTTc < 1:348353/251‑1 (MQ=255) cccTATCACCATAAAACACCGGGCATTTG‑GGCGACC‑GC‑GAAAACTGCCGGAA‑ACAAACTCCG‑ACACGCCATAGGTAAGGTAAAACAGGTTCGATAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCAATTTCat < 2:322321/251‑1 (MQ=255) ccTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGGAGCGATAGCGGGCATCAATTTCat > 2:177783/1‑250 (MQ=255) aTCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCCATTTCATCttt > 2:99510/1‑251 (MQ=255) | ATGCAGCGCAGCCGCTGCCATCACAATGGGAATGAGTGCGCCGCCGACGTTATGCGCCGTGTTCCATAATGCCCACCAACCGCCGCGCTCGGTACGTGAATACCAGGCCGTTAACAGACGCGCACACACC‑GGTGAACCCCAGCCCTGGAAAAAGGCGTTCAGCACCCAGAGCACGGCAAACGCCC‑ATAGCGACGTCGAGAA‑GCCAAACAGAATGTT‑GATAATGCCC‑GTGGCGATAAG‑CCCTATCCCCATAAAATAACGGGCATTTG‑AGCGATC‑GCTGACAA‑TGCCGGAG‑ACAAACTTCG‑ACACGCCATAGGTAATGTAAAACAGGGTCGCTAACAGGCCGATATCGCTACGGCTGAGCACGCCGTTAGCAAGGATTTCTGGTACGGCGGCGTTAAAACTTTTCCGCGTGAAGTAAAACAGCGCGTAACCCAGCCAGATGGTCAGCAGAATATGCCGACGCCAGTAGCGATAGCGGGCATCAATTTCATATTT > NC_000913/3848085‑3848576 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |