mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 172 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,326,450 | 0 | T | G | 37.1% | 216.2 / 23.2 | 117 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,429,984 | 0 | T | G | 36.3% | 199.1 / 17.5 | 102 | L41V (TTG→GTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 4,171,557 | 0 | C | G | 35.9% | 146.2 / 127.1 | 92 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 3,844,219 | 0 | T | G | 35.1% | 204.8 / 18.5 | 114 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NC_000913 | 4,622,250 | 0 | A | G | 34.1% | 174.1 / 28.3 | 91 | E161G (GAG→GGG) | yjjJ | toxin YjjJ |
| * | NC_000913 | 811,721 | 0 | T | G | 33.7% | 492.1 / 52.7 | 295 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.3% | 50.1 / 30.9 | 42 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,665,698 | 0 | T | C | 32.4% | 65.9 / 11.9 | 37 | D38G (GAT→GGT) | gadX | DNA‑binding transcriptional dual regulator GadX |
| * | NC_000913 | 2,745,089 | 0 | A | C | 32.4% | 313.3 / 35.8 | 148 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 4,126,210 | 0 | T | G | 32.1% | 284.0 / 31.1 | 137 | T201P (ACC→CCC) | priA | primosomal protein N' |
| * | NC_000913 | 1,911,754 | 0 | T | G | 32.0% | 223.8 / 10.2 | 105 | T275P (ACC→CCC) | htpX | protease HtpX |
| * | NC_000913 | 1,159,837 | 0 | A | G | 32.0% | 249.4 / 40.9 | 131 | I572T (ATC→ACC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 3,745,374 | 0 | T | G | 32.0% | 142.3 / 13.7 | 101 | W191G (TGG→GGG) | yiaN | 2,3‑diketo‑L‑gulonate:Na(+) symporter ‑ membrane subunit |
| * | NC_000913 | 1,491,098 | 0 | A | C | 31.5% | 203.4 / 15.2 | 92 | Y66S (TAC→TCC) | cybB | superoxide oxidase |
| * | NC_000913 | 4,033,612 | 0 | T | G | 31.3% | 247.8 / 13.9 | 116 | G156G (GGT→GGG) | trkH | K(+) transporter TrkH |
| * | NC_000913 | 1,383,722 | 0 | G | A | 30.8% | 87.9 / 18.7 | 52 | F80F (TTC→TTT) | ycjW | DNA‑binding transcriptional repressor YcjW |
| * | NC_000913 | 1,174,605 | 0 | T | C | 30.5% | 324.5 / 37.1 | 151 | G187G (GGA→GGG) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 3,751,456 | 0 | A | C | 30.4% | 199.6 / 11.5 | 94 | V138G (GTG→GGG) | yiaT | outer membrane protein YiaT |
| * | NC_000913 | 786,855 | 0 | A | C | 30.4% | 347.5 / 24.9 | 149 | G247G (GGT→GGG) | gpmA | 2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| * | NC_000913 | 4,630,340 | 0 | A | C | 30.3% | 232.8 / 24.2 | 126 | G61G (GGT→GGG) | ettA | energy‑dependent translational throttle protein EttA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15911 | NA (NA) | 12 (0.080) +TGTTTTCAA |
11/470 | 3.7 | NA | noncoding (525/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 15922 = | NA (NA) | noncoding (536/1345 nt) | IS186 | repeat region | |||||
| * | ? | NC_000913 | 3984447 = | 131 (0.860) | 3 (0.020) | 3/478 | 5.8 | 1.9% | coding (1561/1656 nt) | aslA | putative sulfatase AslA |
| ? | NC_000913 | = 4266676 | 182 (1.210) | coding (895/1080 nt) | alr | alanine racemase 1 | |||||
| * | ? | NC_000913 | = 3693908 | 252 (1.650) | 3 (0.020) | 3/488 | 5.8 | 1.9% | coding (1329/2619 nt) | bcsA | cellulose synthase catalytic subunit |
| ? | NC_000913 | 3853763 = | 61 (0.400) | intergenic (+121/+3) | tisB/ysdE | membrane‑depolarizing toxin TisB/protein YsdE | |||||
| * | ? | NC_000913 | = 3489724 | 230 (1.500) | 3 (0.020) | 3/488 | 5.8 | 2.0% | coding (457/1221 nt) | argD | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| ? | NC_000913 | = 3671581 | 68 (0.440) | coding (314/603 nt) | yhjB | putative DNA‑binding transcriptional regulator YhjB | |||||
| * | ? | NC_000913 | = 2335107 | 95 (0.620) | 3 (0.020) +C |
3/486 | 5.8 | 4.9% | coding (1538/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA |
| ? | NC_000913 | = 4603146 | 21 (0.140) | intergenic (‑288/‑331) | yjjP/yjjQ | putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ | |||||
| * | ? | NC_000913 | = 1786961 | 105 (0.690) | 3 (0.020) | 3/488 | 5.8 | 1.7% | coding (152/2379 nt) | ppsA | phosphoenolpyruvate synthetase |
| ? | NC_000913 | 2583975 = | 248 (1.620) | coding (1551/1980 nt) | aegA | putative oxidoreductase AegA | |||||
| * | ? | NC_000913 | 986466 = | 253 (1.650) | 3 (0.020) | 3/486 | 5.8 | 1.3% | coding (517/1089 nt) | ompF | outer membrane porin F |
| ? | NC_000913 | 4477761 = | 190 (1.250) | coding (551/1005 nt) | argI | ornithine carbamoyltransferase ArgI | |||||
| * | ? | NC_000913 | 262834 = | 132 (0.860) | 3 (0.020) | 3/486 | 5.8 | 1.7% | intergenic (+78/‑37) | proA/thrW | glutamate‑5‑semialdehyde dehydrogenase/tRNA‑Thr |
| ? | NC_000913 | 3195663 = | 212 (1.390) | coding (1091/1434 nt) | hldE | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase | |||||