New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2335107	95 (0.620)	3 (0.020) +C	3/486	5.8	4.9%	coding (1538/1689 nt)	yfaA	DUF2138 domain‑containing protein YfaA
	?	NC_000913	= 4603146	21 (0.140)					intergenic (‑288/‑331)	yjjP/yjjQ	putative succinate exporter YjjP/DNA‑binding transcriptional repressor YjjQ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAG  >  NC_000913/4602910‑4603348                                                                                                                                                                                                                                             |                                                                                                                                                                                                           cATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTTATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGTGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGtt                                                                                                                                                                                              <  1:231922/251‑1 (MQ=255)      gTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTtgtgtg                                                                                                                                                                                         >  2:721766/1‑251 (MQ=255)          cATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGAttt                                                                                                                                                                                     <  2:937725/251‑1 (MQ=255)                           ttGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAg                                                                                                                                                                     <  1:721766/250‑1 (MQ=255)                              cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGat                                                                                                                                                                 <  2:495567/251‑1 (MQ=255)                              cGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCAGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGat                                                                                                                                                                 >  1:137119/1‑251 (MQ=255)                                                              tCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGAtt                                                                                                                                 >  2:203409/1‑251 (MQ=255)                                                                      aTCGGGAGAAGCTCAGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGttt                                                                                                                          <  2:137119/250‑1 (MQ=255)                                                                         gggAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCa                                                                                                                      <  1:739511/251‑1 (MQ=255)                                                                                          aaaaaGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTaaca                                                                                                      <  1:203409/250‑1 (MQ=255)                                                                                             aaGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACtt                                                                                                  <  2:388377/251‑1 (MQ=255)                                                                                                                       aacTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTcc                                                                          >  2:281710/1‑249 (MQ=255)                                                                                                                                        tatCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGtt                                                        <  1:115665/250‑1 (MQ=255)                                                                                                                                            atcatAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGt                                                                                                                            >  1:554655/1‑178 (MQ=255)                                                                                                                                            atcatAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGt                                                                                                                            <  2:554655/178‑1 (MQ=255)                                                                                                                                               atAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTg                                                <  1:1187356/251‑1 (MQ=255)                                                                                                                                                           ttGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCt                                      >  1:308705/1‑249 (MQ=255)                                                                                                                                                           ttGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCt                                      <  2:308705/249‑1 (MQ=255)                                                                                                                                                                                           aaCCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAgg    <  1:281710/251‑1 (MQ=255)                                                                                                                                                                                                      ttttttAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAg  >  2:1188041/1‑242 (MQ=255)                                                                                                                                                                                                      ttttttAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAg  <  1:1188041/242‑1 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                           CATTTGTATCATGAAGCACGGTTGTTTTGCGGTAGGTTAAGATCAAAATTGCGCTGATTAATCCTGGTTATCGGGAGAAGCTCGGTGATAAAAAGCGAATTATCTCTCGCCGCAAACAAACTATCACATGAATATTATCATCATAATGAATTTATTGTTTGGCCTTTACGAATCAGGATAATAGATAACCGGGCACGTTTTTTAATGTTAACAAGCTAAAACCATCAGATTTCATTGAATAAATATTGGTTGTGTGATTTTGCATTCTGCGGGAAGGGATATCATTTAATTATAAATTAAATGAATGTGATTTCTGTTTTTCATTAAGTATTCCTAACAACTTAATGTAGATATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAG  >  NC_000913/4602910‑4603348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.