mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 423,061 | 0 | A | G | 34.0% | 90.5 / 10.9 | 54 | I182V (ATA→GTA) | malZ | maltodextrin glucosidase |
| * | NC_000913 | 2,008,373 | 0 | G | T | 32.3% | 28.1 / 13.3 | 31 | G33C (GGC→TGC) | yedE | putative selenium transporter YedE |
| * | NC_000913 | 2,008,392 | 0 | G | T | 31.4% | 52.6 / 10.6 | 35 | W39L (TGG→TTG) | yedE | putative selenium transporter YedE |
| * | NC_000913 | 4,205,621 | 0 | G | T | 30.6% | 29.4 / 10.7 | 36 | S104* (TCA→TAA) | purD | phosphoribosylamine‑‑glycine ligase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 29.0% | 27.5 / 20.2 | 31 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,027,233 | 0 | T | A | 27.8% | 62.2 / 10.1 | 36 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 803,869 | 0 | G | T | 26.7% | 49.8 / 18.4 | 46 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 933,512 | 0 | G | T | 25.9% | 79.0 / 11.5 | 55 | A97S (GCC→TCC) | ftsK | cell division DNA translocase FtsK |
| * | NC_000913 | 1,411,439 | 0 | A | C | 25.7% | 114.8 / 10.7 | 72 | G170G (GGT→GGG) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| * | NC_000913 | 2,438,847 | 0 | C | T | 22.9% | 78.8 / 11.6 | 48 | P300S (CCA→TCA) | flk | putative flagella assembly protein |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 20 (0.390) | 6 (0.120) | 6/470 | 3.1 | 24.9% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 17 (0.340) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 1411899 = | 45 (0.870) | 4 (0.090) | 4/436 | 3.5 | 11.7% | coding (50/936 nt) | ttcA | tRNA cytosine(32) 2‑sulfurtransferase TtcA |
| ? | NC_000913 | = 1434958 | 20 (0.430) | intergenic (‑552/+227) | ynaM/uspF | protein YnaM/universal stress protein F | |||||
| * | ? | NC_000913 | = 4542690 | 20 (0.390) | 3 (0.060) | 3/470 | 4.0 | 14.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 17 (0.340) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 2515407 = | 9 (0.170) | 3 (0.060) | 3/484 | 4.1 | 6.8% | noncoding (1135/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 2963185 = | 73 (1.420) | coding (532/564 nt) | ppdB | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdB | |||||
| * | ? | NC_000913 | = 2358697 | 66 (1.270) | 3 (0.060) | 3/488 | 4.1 | 4.8% | coding (149/804 nt) | yfaU | 2‑keto‑3‑deoxy‑L‑rhamnonate aldolase |
| ? | NC_000913 | 3403667 = | 53 (1.020) | coding (184/975 nt) | yhdH | acrylyl‑CoA reductase | |||||
| * | ? | NC_000913 | 1772077 = | 41 (0.790) | 3 (0.060) | 3/488 | 4.1 | 5.4% | coding (1007/1215 nt) | ydiM | putative exporter YdiM |
| ? | NC_000913 | 3403856 = | 65 (1.250) | coding (373/975 nt) | yhdH | acrylyl‑CoA reductase | |||||
| * | ? | NC_000913 | = 1515549 | 55 (1.060) | 3 (0.060) | 3/488 | 4.1 | 6.2% | coding (788/795 nt) | ydcV | putative ABC transporter membrane subunit YdcV |
| ? | NC_000913 | 2079754 = | 36 (0.690) | coding (838/1059 nt) | yeeA | putative transporter YeeA | |||||
| * | ? | NC_000913 | = 1398618 | 47 (0.910) | 3 (0.060) | 3/488 | 4.1 | 5.8% | coding (5/951 nt) | uspE | universal stress protein E |
| ? | NC_000913 | = 4096803 | 50 (0.960) | coding (646/1470 nt) | rhaB | rhamnulokinase | |||||
| * | ? | NC_000913 | 609141 = | 6 (0.120) | 3 (0.060) | 3/484 | 4.1 | 7.1% | noncoding (1135/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 2963185 = | 73 (1.420) | coding (532/564 nt) | ppdB | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdB | |||||
| * | ? | NC_000913 | 490594 = | 70 (1.350) | 3 (0.060) | 3/486 | 4.1 | 4.9% | coding (219/528 nt) | priC | primosomal replication protein N'' |
| ? | NC_000913 | = 1770620 | 46 (0.890) | coding (6/357 nt) | ydiL | DUF1870 domain‑containing protein YdiL | |||||