| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,438,847 | 0 | C | T | 22.9% | 78.8 / 11.6 | 48 | P300S (CCA→TCA) | flk | putative flagella assembly protein |
| Reads supporting (aligned to +/- strand): ref base C (15/22); new base T (11/0); total (26/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.73e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCGTCAGACGCTAAGCCAGCAAAATACGCCGACGCTGGAATCACTACAGATGACGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCGATATCCTGAAACGCGGCG > NC_000913/2438608‑2439092 | cgcgTCAGACGCTAAGCCAGCAAAATACGCCGACGCTGGAATCAATACAGATGACGCTAAAAAAACCTTTCGATGCCAGTGAACTGGCGGCGTTCTCGGCATATATCCCGCAACAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTACTTTATCCTTTTTCCCCGattatg > 1:248472/1‑251 (MQ=255) ccgaaGCCAGCAAAATACGCCGACGCTGGAATCCCTACAGATGTCGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCCTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGAGCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGc < 2:304901/248‑1 (MQ=255) gCAAAATACGCCGACGCTGGAATCACTACAGATGACGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCGTTTCCACCGATGATGGACACGTTGCAAAATATgg < 2:116202/251‑1 (MQ=255) cTGGAATCACTACAGATGACGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTCAATGGATTGATCCGCGGGTTTTTGC‑A‑CCCCTGCCTTATCCTTTTCCACCGCTGATGGACAAGTTGCAAAATAATGC‑CACGCGGCCCGCGCt > 1:392711/1‑251 (MQ=255) gAATCACTACAGATGACGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCtgtg < 2:362446/251‑1 (MQ=255) cGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTAACGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCCTCGCTTTCTTCTGCCCAGGCCGCGGATATTCTTAATCAGCTTTATCAACGGCGGGTTACAGGGATTTATCCGCGAGTTCT‑GC‑AAACGCTGCTTTATACTTTTTCTCCCCTGATTGACACGATTCAAAATATGGCGAAC‑CGTCCCGCGCTGTGGATACCGTTactagcc > 1:220267/1‑245 (MQ=255) gCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGa < 2:48766/251‑1 (MQ=255) aaaCAACCTTTAGATGCCAGTGAACTGGTGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTAt < 1:65051/251‑1 (MQ=255) aacaacCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGAATATCTCCAGCAAAAATATGGTCTTTCTGCGAAATCATCGCTTTCTTCCGCCAAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑CACGCGTCCCGCGCTGTGGATACTGTTAGTTGCGATTATc > 1:319592/1‑251 (MQ=255) aacCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGGATGATCCGCGTGGTAT‑GC‑AACCGCTTCTTTATTCTTTTTCCCCGATGATGGGAACGGTGCACAATATGGA‑AACGCGTCCCCCCCCGTGGGGACTGTTAGGCGCGGTTATCCtc > 2:468382/1‑250 (MQ=255) ccTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGAt < 1:319760/251‑1 (MQ=255) ccTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGAt < 1:468382/251‑1 (MQ=255) aGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGGTTGATCCGCGTGTTTT‑GC‑AACCGCTGCTTAATCCTTTTCCCCCGATGATGGACCCGTTGCAAAATATTGC‑AAAGCGTCCCCCGCTGTGGATACTGTTTGTCGCGATTTTCCTGATGCTGGTctggct > 1:47678/1‑251 (MQ=255) aCTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGttt > 1:176216/1‑250 (MQ=255) gcggagTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGATAGTCGCGGTTATCCTGATGCTGGTCTCTCTGGTTC‑GTT‑a < 2:46327/251‑1 (MQ=255) tATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGGTTGATCCGCGTGTTAT‑TC‑AACCTCTGCTTTATCCTTTTTCACCGATGATGGACAAGTTGCAAAATATGGC‑AACGCGTCCCCCCCCGTGGGTACTGTTAGTCGCGATTTTCCTGATGCTGGTCTGGCGGGGTC‑GGT‑AAcccagc > 2:15970/1‑248 (MQ=255) gCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑Gaa > 1:183802/1‑250 (MQ=255) cATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAAt < 2:176216/251‑1 (MQ=255) atatatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATg < 2:183802/251‑1 (MQ=255) tatatCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTTCAGGGGGTGATCCCCGTGTTTT‑TC‑CACCGCCGCTTAATCCTTTTTCACCCATGCTGGGAAAGGTGCAAAAAAAGGC‑AACGCGTCCCGCGCCGTGGATACTGTTTGTTGCGGTTATTCTGATGCGGGTCTGGCTGGGTC‑GTTTAAccccccgaaatg > 2:169727/1‑242 (MQ=255) aaaaTATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTTATTCTTTTTCACCGATGATGGACACGTTGCCAAATATGGC‑CACCCCTCCCGCGTTGTGGGTACTGTTAGTCGCGGTTATCCTGATGCTGGGCTGGCTGGTTT‑GTT‑AAcccccgcgaaaatacaatattgtgg > 2:72727/1‑230 (MQ=255) aaaTATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTTCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCCCGCTGTGGATACTGTTATTCGCGATTATCCTGATGCTGGTCTGGCCGGTTT‑GTT‑CACCCCGAC‑GAAATGACAGTATCGTGAc > 1:91697/1‑251 (MQ=255) atGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTTAAGGGATTGATCCGCGTGTTTT‑GC‑AACCGCTGCTTCATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCCCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑TACCCCGAC‑GAAATGACAGTATCGTGGCaat > 1:155628/1‑250 (MQ=255) tCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGAGTGTTAT‑GC‑AAACGCTCCTTAATCCTTTTTCAACGATAATGCACACGTTGCAAAATATGGC‑AACGCGCGCCGCGCTGTGGGTACTGTTAGTCGCCATTTTCCTGATGCTGGACTAGCTGGGTC‑GTTTAACCCC‑AC‑GAAATGAAAGGATCGTGACAATAATAc > 1:214292/1‑251 (MQ=255) tttCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTTATCCCCGTGTTAT‑TT‑AACACCTGCTTAATTCTTTTTCACCGATGCTGTACCAGTTTCAAAAAATGGT‑AACCAGGCCCCCCCTGTGGGGAATTTTAGTCGCGATTATTCTCATGCTGGTCTGGGTGGTTC‑GTT‑AACCCCCAC‑CGAATGACAGTATcctggtcgaaaaaccc > 2:379933/1‑236 (MQ=255) tCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGCTTAAGGGATTGATCCGCGCGTTAT‑GC‑AACCGCTGCTTAATCCTTTTTCACAGATGATGGACACCTTGCAAAATATGGC‑AACGCCTCCCGAGCTGTGGAAACCGTTAGACGCGGTTATCCTGCAGGTGGTCTGGCTGGGTA‑GTT‑TACCCCGGC‑GGAATGACAGTATCGTggaaaacatacccac > 1:377171/1‑237 (MQ=255) cTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGGTTGATCCGCGGGGTTT‑GC‑CACCGCTGCTTCATCCTTTTTCACCCCTGATGGACACGTTGCCAAATATTGC‑AACGCGTCCCCCGCTTGGGAGACTGGTAGTCGCGAGTATCCTGATGCTGGGCTGGCTGGGTCTGTT‑ACCCCGGAC‑‑AAATGACAGTATCGTGAGAAAAATACCCAGc > 2:363994/1‑251 (MQ=255) ccgcAATCCTCGCTTTCTTCTGCCCAGGCCGTGGATATTCTTAGTCAGCTTTAGCAACGGCGGGTTAAAGTGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCACAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGACTGTCTGGTTC‑GTT‑AACTCCGAC‑GAAATGACCGTATCGTGATAATAATACCCAGCa < 2:392711/249‑1 (MQ=255) cGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATc < 1:72727/251‑1 (MQ=255) ttcttcTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCCACGACGGGGTAAAGGGGTTCATCCCACTGTTAT‑GCCAACC‑CTGCTTAATCCTTTTCCACCGATGATGGACCCGCTGCAAAATATGGC‑CACGCGTCCCGCCCTGTGGCTACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AAACCCGAC‑GAAATGAACGTATCGTGAAAATAATACCCCGCACCGCACAGATCGcac > 1:40295/1‑249 (MQ=255) ttcttcTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGc < 2:155628/249‑1 (MQ=255) tcttctGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCTCGATTATCCTGATGCTGGTCTGGCGGGTTC‑GGG‑AACCCCGAC‑GATATGACAGGATCGTGACAATAATACCCATCACCGCAGAGATCGccc < 2:248472/250‑1 (MQ=255) tGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑TC‑AAACGCTGCTTAATCCTTTTCCACCGATGATTGACACGTTGCCAAATATTGC‑CACCCGTCCCGCGCTGTTGATACTGTTAGTCGCGATTATCCTGCTGCTGGGCTGGCGGGTTC‑GTT‑AACCCCGACCGAATTG‑CAGATTCGTGGCAATAATTCCCAGCCCCCCAGGGATCGCCCCCGCa > 1:99415/1‑250 (MQ=255) gCCCAGGCCGAGGATATTCTTAATCAGCTTGATCAACGGCGGGTTAAAGGGATTGATCCGCTTGTTAT‑GC‑AACCGCGGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTGCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCGTGTCTGGCTGGGTC‑GTT‑AACCCCGAC‑GAAATGGCAGTATCGTGGCAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAg < 1:503694/251‑1 (MQ=255) ggATAATCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGAGTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAAGATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCGGGTCTGGCTGGTTC‑GTT‑AACCCCTAC‑GAAATGACAGTAGCGTGAGAAGAATTCCCAGCGCCGCAGAGATCGCCCCGGCAAGAAATACCGAag < 2:530218/251‑1 (MQ=255) cAGCTTTATCAACGGCGGGTGAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCTCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGTTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGATATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACg < 1:510237/250‑1 (MQ=255) gtgtTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGAAGATGGACAAGTAACACAATATGGC‑CACCCGTACCGCGCCATGGATACTGTCAGTAGCGATTATCCTAATGCTGGCCTGGCTGGTTC‑GAT‑AACCCCCAC‑GAAATGACAGTATCGTGACAATAATACCCAGCCCCGCAGAGATCGCCCAGGCAAGAAATACCGACGAGTAACCAAACGTGCCCGCCAGCATTCCCGCCAGCGGCCCGGAGACGcct > 1:31550/1‑250 (MQ=255) gtgtTAG‑GC‑AACCGGTGCTTAACCCGTGTCCACCGATGATGGACACGTTGCAAAATATGGG‑AACGCGGCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCGGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAAGACCGAAGAGTAACCAAACGGGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCg < 2:282101/251‑1 (MQ=255) gggtTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGccc > 2:416489/3‑250 (MQ=255) aT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGCGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGc > 2:5135/1‑251 (MQ=255) aT‑GC‑AACCGCTGCTTAATCCTTTTCAACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GCAATGACAGAATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCACGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGCgggg > 2:535601/1‑250 (MQ=255) cacccGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGGTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAAGACCGAAGAGTAACCAAACGGGTTCGCGAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCGat < 1:363994/248‑1 (MQ=255) cGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCCATATcc > 2:397809/1‑251 (MQ=255) gctTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCGATATCCTGa > 1:60496/1‑250 (MQ=255) aaTCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑ACCCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCGATATCCTGAAAcgc < 1:431901/251‑1 (MQ=255) aTCCTTTTCCCCCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGCCTGGTTC‑GTT‑ACCCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGACCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCACGCATTCCCTCCAGCGGCCCGGACACGCCGAGGGCGATATCCTGAAAcgcg > 2:203333/1‑251 (MQ=255) ccTTTGCCCCCGAGGAGGGACACGTGGCAAAATATGGC‑AACGCGTCCCGCGCTTTGGATCCTGTTAGTCGCGATTACCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATCCCGAAGAGTAACCAAACGTGGTCGCCAGCATCCCCGCCAGCGGCCCGGAGACGCCGAGGGCGATATCCTGAAACgcggc < 2:21272/251‑1 (MQ=255) cgtttCCACCGATGATGGACTCGTTGCAAAATAGGTC‑ACCGCGTCCCGCGCTGTGGATACTGTTATGCGCGATTATCCTGATGCTGGTCTGGCTGTTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATCCCCAGCACCGCAGAGATCTCCCCGGCAAGAAATACCGAAGATTACCCAAACGTTGTCGCCATCATTCCCGCCAGCGTCCCGGAGACGCCGAGGGCGATATCCTGAAACgcggcg < 1:52168/249‑1 (MQ=255) | CGCGTCAGACGCTAAGCCAGCAAAATACGCCGACGCTGGAATCACTACAGATGACGCTAAAACAACCTTTAGATGCCAGTGAACTGGCGGCGTTATCGGCATATATCCAGCAAAAATATGGTCTTTCTGCGCAATCATCGCTTTCTTCTGCCCAGGCCGAGGATATTCTTAATCAGCTTTATCAACGGCGGGTTAAAGGGATTGATCCGCGTGTTAT‑GC‑AACCGCTGCTTAATCCTTTTCCACCGATGATGGACACGTTGCAAAATATGGC‑AACGCGTCCCGCGCTGTGGATACTGTTAGTCGCGATTATCCTGATGCTGGTCTGGCTGGTTC‑GTT‑AACCCCGAC‑GAAATGACAGTATCGTGACAATAATACCCAGCACCGCAGAGATCGCCCCGGCAAGAAATACCGAAGAGTAACCAAACGTGGTCGCCAGCATTCCCGCCAGCGGCCCGGAGACGCCGAGGGCGATATCCTGAAACGCGGCG > NC_000913/2438608‑2439092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |