New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1398618	47 (0.910)	3 (0.060)	3/488	4.1	5.8%	coding (5/951 nt)	uspE	universal stress protein E
	?	NC_000913	= 4096803	50 (0.960)					coding (646/1470 nt)	rhaB	rhamnulokinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGGTACGTTCGTCCGGGGAGAGCAGGGTGGTCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1398446‑1398618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCATAGGTCACTGGATTTGCCCGCAGGGTAATGAGATTCCAGTGGTCGCCGTTG‑CCAGCCATGATACCGCCAGCGCGGTTATCGCCTCGCCGTTAAACGGCTCACGTGCTGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAGCCAGACGCCATTTACCAATGACACGGCACTGGCAGCCAACATCACCAATGAAGGCGGGGCGGAAGGTCGCTATCGGGT  <  NC_000913/4096803‑4096571                                                                                                                                                                                                                                                                                                                                                                                                                         AGCGGTACGTTCGTCCGGGGAGCGCAGGGTGGTCATTTCGTATGAGAAGTCCTAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGGTCATAGGTCACTGGATTTGCCCGCAGGGTAATGAGATTCCAGTGGTCGCCGTTG‑CCAGCCATGATACCGCCAGCGCG                                                                                                                                                             >  2:216712/1‑251                                                 GTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGGAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGGTCATAGGTCCCTGGATTTGCCCGCAGGGTAATGAGATTCCAGGGGTCGCCGTTG‑CCAGCCATGATACCGCCAGCGCGTTTATCGCCTCGCCGTTAAACGGCTCACGTGCTGCTTATCTCTCTTCT                                                                                                             <  1:216712/251‑1                                                                                                                                                            ccacggcacccggttaAGGTCATAGGGCATTGGATTTGCCGCCAGGGTAATGAGTTGCCAG‑GGTCCCCCTTGGCCAGCCATGATACCGCCAGCGCGGTTATCGCCTCGCCGTTAAACGGCTCACGTGCTGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAGCCAGACGCCATTTACCAATGACACGGCACTGGCAGCCAACATCACCAATGAAGGCGGGGCGGAATGTCGCTATCGGGT  <  2:112701/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                         AGCGGTACGTTCGTCCGGGGAGAGCAGGGTGGTCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1398446‑1398618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCATAGGTCACTGGATTTGCCCGCAGGGTAATGAGATTCCAGTGGTCGCCGTTG‑CCAGCCATGATACCGCCAGCGCGGTTATCGCCTCGCCGTTAAACGGCTCACGTGCTGCTTATCTCTCTTCTGGCACCTGGTCATTGATGGGCTTCGAAAGCCAGACGCCATTTACCAATGACACGGCACTGGCAGCCAACATCACCAATGAAGGCGGGGCGGAAGGTCGCTATCGGGT  <  NC_000913/4096803‑4096571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.