mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,363 | 0 | C | . | 78.6% | 102.1 / 30.0 | 42 | intergenic (‑490/+919) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 2,173,364 | 0 | C | . | 78.6% | 99.5 / 32.5 | 42 | intergenic (‑491/+918) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| * | NC_000913 | 3,531,440 | 0 | A | C | 38.5% | 113.3 / 10.4 | 80 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 811,721 | 0 | T | G | 36.9% | 57.5 / 12.7 | 68 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 385,797 | 0 | T | G | 35.3% | 66.1 / 12.5 | 52 | V189G (GTG→GGG) | tauA | taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 836,654 | 0 | A | G | 34.7% | 72.7 / 15.8 | 49 | I102V (ATT→GTT) | hcxB | hydroxycarboxylate dehydrogenase B |
| * | NC_000913 | 288,382 | 0 | A | C | 34.5% | 67.6 / 12.0 | 56 | T532P (ACC→CCC) | yagH | putative xylosidase/arabinosidase |
| * | NC_000913 | 3,191,103 | 0 | C | T | 33.3% | 48.9 / 12.0 | 33 | P158S (CCA→TCA) | yqiI | putative fimbrial protein YqiI |
| * | NC_000913 | 4,630,340 | 0 | A | C | 33.3% | 72.2 / 16.4 | 59 | G61G (GGT→GGG) | ettA | energy‑dependent translational throttle protein EttA |
| * | NC_000913 | 4,257,698 | 0 | T | G | 32.6% | 54.0 / 10.3 | 43 | V195G (GTT→GGT) | lexA | DNA‑binding transcriptional repressor LexA |
| * | NC_000913 | 559,181 | 0 | G | A | 31.0% | 33.7 / 10.7 | 29 | E70K (GAA→AAA) | sfmC | putative fimbrial chaperone SfmC |
| * | NC_000913 | 4,502,779 | 0 | A | T | 30.2% | 72.2 / 13.6 | 43 | L218* (TTA→TAA) | insG | IS4 family putative transposase |
| * | NC_000913 | 4,336,901 | 0 | T | A | 28.9% | 62.0 / 13.2 | 46 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 2,846,705 | 0 | G | C | 22.6% | 113.5 / 10.5 | 62 | V236V (GTC→GTG) | hycD | formate hydrogenlyase subunit HycD |
| * | NC_000913 | 2,173,360 | 0 | A | . | 21.4% | 103.7 / 15.8 | 42 | intergenic (‑487/+922) | gatD/gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |