Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 811,721 | 0 | T | G | 36.9% | 57.5 / 12.7 | 68 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
Reads supporting (aligned to +/- strand): ref base T (10/31); new base G (20/4); total (33/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.88e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGCGCATGAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGTTAC > NC_000913/811478‑811960 | ggcgcATGAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCAGGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑cc < 2:218836/250‑1 (MQ=255) aGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCGCGC‑AGGGGACGG‑CC‑A‑TTGATCTCTcgcc > 1:354344/1‑251 (MQ=255) ggATATCGACCGTCTGCTGGAGGTGCTGCAGGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTcgccg < 2:444372/251‑1 (MQ=255) ccacccGTCTGCGGGAGGTGCGGCGTGGCA‑TGGTTTAAAAACAAAGCCATTGCGGCGGAATTGGGTGGGGCACCCGCCCACTATGAGCAACATCCAGATCTACAGCGCCGGTGTGCTGCCGCCTTACGGG‑CAATCCTTCCACGGCGTAAATCCCCCCACGTACGTGG‑CGCGGGTTGTGG‑CCCTGGTTGGATGCCCCGCCACTGGGGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGTTCTCGCGCCG‑CCAAt < 2:434357/247‑1 (MQ=255) aCCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGGTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGTCACGCGC‑CGGTGCGGG‑CC‑T‑TAAATTTCTcgccccccaagct > 2:304376/1‑242 (MQ=255) cGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGcctg > 1:111443/1‑248 (MQ=255) gTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCGCGC‑CGGGGACGG‑CC‑t‑ttgagctcctcccccccatgcctgt > 2:344133/1‑227 (MQ=255) ggAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑Agg < 1:426397/249‑1 (MQ=255) aGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACCGCCCCCCC‑CGGGGAAGG‑CC‑T‑TAGATCCCTTGCCG‑CCCAAGCTTGTTC‑CGG‑CAcc > 2:244251/1‑250 (MQ=255) gTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCCAAGCTTGTTC‑AGG‑CACGcc > 1:105303/1‑251 (MQ=255) cgcttcctgcccaCGGTTCATAACCAA‑GCCTTAGCATCGGCATTTGGCCCGGCAGCCGCACCTTACGAGCACCACGCCTGTTTACAGCGCCCGAGTGCTGCCTCCTACCTGG‑CAATGTTTCCACACCGTAAATACCGCCACGTAC‑TTGTCGCGGGTTGTGG‑ACCTGGCGGGATGAGCCGCCACTGGCGGGTTCGTCACGCGC‑AGGTGACCG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCa < 2:119131/239‑1 (MQ=255) tgcATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGGCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACCCCAGa > 1:412570/1‑250 (MQ=255) gcATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTAGGGCAGCCGCACACTATGAGCAACATGCAGATCTAAAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCAACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGGCACGCGC‑AGGGGACGG‑CC‑G‑TAAATCCCTCGCCG‑CCAATGCTTGTTC‑AGG‑GACGcccga > 1:452559/1‑246 (MQ=255) gcATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGGCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCGCTGGCGGGAACGTCACGGGC‑AGGTGACTG‑TC‑T‑GAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGa < 1:201497/249‑1 (MQ=255) ccatgccaccgtttAATAACCAA‑GCCATTGCAGCGGCATTTGGTCGGCCAGCCGCACACTATGAGCAACATGCAGATCTCCAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGTACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAg < 1:266676/239‑1 (MQ=255) gggCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCCCACTAGGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAg‑g < 2:75263/248‑1 (MQ=255) ataaACAA‑GCCATTGCAGCGGCATTTGGTCGGGAAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACGCCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGCACGGAACGCGC‑AGGGGCCGG‑CC‑A‑CAGATTTCCTGCCGGCCACT‑CTTGTTC‑AGG‑CACGCCCGAAG‑Gaatgatcaggaga > 1:167976/1‑238 (MQ=255) aaaaCAA‑GCCATTGCGGCGGCATTTGGTCGGGCAGCCGCCCACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACCCCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑tt < 2:105303/250‑1 (MQ=255) aaaCAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGTCCCGCGC‑CGGGGACGG‑CC‑T‑TTGAACTCTCCCCG‑CCAAAGCTTGTTT‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑ttt > 1:233784/1‑250 (MQ=255) aaCAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTAt < 1:376294/251‑1 (MQ=255) aa‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCCCCC‑CCCATGCTTGGTC‑AGG‑CCCGCCCGAAG‑GATGCCGC‑CGAACA‑TTTTCTg > 1:390064/1‑251 (MQ=255) agtccATGGCAGCGGCTTTGGGTCGGGCAGCCGCACACGATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGACTTTCGGG‑CAATGCTTCCACAGCGTAAATACCCCCTCGTAC‑TGGACGCGGGTTGGGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑TATGCCGC‑AGACCA‑TTATCTg < 2:481387/248‑1 (MQ=255) aTTGCAACCGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCCGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGTCACGAGC‑CGGTGAACG‑AC‑T‑TAGATCTCTCGCCC‑CCCACGCCTGTTC‑CAG‑CGCGCCAGAAGCGA‑GCCGC‑AGACCC‑TTTTCTGGCggg > 2:390437/1‑251 (MQ=255) aGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCCCAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAAAGGCACGCGC‑CGGGGACGG‑GC‑T‑TAGAACTCTCCCCG‑CCCAAGCTTTTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGgagct > 1:40976/1‑248 (MQ=255) gCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGCGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCGCCC‑CGGGGACCG‑CC‑T‑TTGATCTCCCCCCC‑CCCACGCCTTTTC‑AGGGCA‑GCCAGAAA‑GATCACGC‑AGACCA‑CTATCTgggggggtgtaaccg > 2:207104/1‑242 (MQ=255) ttGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATc < 1:192373/250‑1 (MQ=255) tGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATcc < 1:463102/250‑1 (MQ=255) cGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGc < 1:24157/250‑1 (MQ=255) cacaCTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCAAGCGC‑CGGGGACGGGCC‑T‑T‑GAAATCTCGCCG‑CCAATGCTTTTTC‑AGG‑CACGCCAGAAG‑GATCCCCC‑AGACCC‑TTATTTGGCGGGGGATATCGAATCCCtccccgtagcgcct > 2:404119/1‑238 (MQ=255) acTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATg < 1:165082/173‑1 (MQ=255) aTGAGCAACATGAAGATCTACAGCGCCAGAGTGCTGACGCCTTTCTGG‑CAATGCTGCCCCAGCGTAAATACCCCCCCGTAC‑TGGACGGGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CT‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GAGGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑g < 1:245718/251‑1 (MQ=255) tGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGGCACGCGC‑AGGGGGCGGGCC‑T‑T‑GAGCTCTCGCCC‑CCAATGCTTGTTCCAGG‑‑ACGCCCGCAG‑GGTGCCCC‑AGCCCACTTTTC‑GGCGGGGGATATCGGAACCCTGCCCTTAGCGACAGCgccgg > 2:364925/1‑247 (MQ=255) aGCAACATGCAGCTCAACAGCGCCAGAGGGCTGACCCCTAACTGG‑CATTGCTTCCACAGCGAAAAGACCCCCACGTAT‑GGGACGCGGGTTGGGG‑ACCTGGCGGGAGGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTc < 2:342126/251‑1 (MQ=255) tccctccaccacgctcttccactccaCGCCTTCCTGC‑CAAGGCTTCCACAGCTAAAATTCCCCCCCGTTC‑GGGCCGCGGGTTGTGG‑CCCTGGCGGGATGAGCCGCCACGGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTg < 2:336136/225‑1 (MQ=255) aGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACCCCCACGTAC‑TGGACGCGGGTTGTGG‑CCCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCAt < 1:112192/251‑1 (MQ=255) gATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGGGATATCGAAACCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATg > 1:101393/1‑251 (MQ=255) cAGCGCCAGAGTGCGGACGCCTTACGGG‑CAATGCTCCCACAGCGTAAAACCACCCACGTAC‑GGGACGCGGGTGGTGG‑GCCTGGCTGGAGGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGACCTCTCGCCG‑CCAATGCGTGTTC‑AGG‑CTCGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAAGCCCGGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCaa < 2:239462/251‑1 (MQ=255) ccaagagTGCTGCCGCCTTACGGG‑CAATGCTTCCACAGCGTAAATACCCCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGAGGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAAtctc < 1:332875/248‑1 (MQ=255) ccggagggCTGACGC‑TTACTGGGCAATGCTTCCACACCGAAAACACCCCCACGTAC‑TGGA‑GCGGGTTGGGGGACCGGCCGGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTGGTTC‑AGG‑AACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGTGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCg < 2:136397/244‑1 (MQ=255) aCGCCTTCCTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGAAGG‑CC‑C‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GGTGCCGC‑AGACCA‑TTTTCTGGCGGGGGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GGTCGGTCTTg > 1:336136/1‑225 (MQ=255) gCCTTTCTGG‑CAGTGCTTCCCCACCGTAAACACCCCCCCTTTC‑TGGACGGGGTTTGGGG‑ACCTGGGTGGTGGGGCCGCCATGGGCGGGACCGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGCTCCCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTGTCTGGCGGGAGATATCGAATCCCTGCCGTGAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAttggtg < 2:448484/251‑1 (MQ=255) ccTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAAAGTCACGCGC‑AGGTGAAGG‑CC‑T‑TAGAGCTCTCGCCG‑CCAATGCTTGTTT‑AGG‑CCCGCCAGAAG‑GATGCCGC‑AGACCA‑ATATCTGGCGGGGGATATCGAAACACTGCCGTTAGCGGCTGCGGAC‑GT‑CGATCTTTGAAGGAGCAATCTCGCCGTGCAggggtgg > 1:144177/1‑250 (MQ=255) tGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAAAGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCC‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GGTGCCGC‑AGACCA‑CTATCTTGCGGGGGATATCGAATCCCTGCCGTTTACGGCTGCG‑ACCGTT‑GATCTTTCATGGAGCCAtcttccagatcaggggggggggaat > 2:183328/1‑229 (MQ=255) cAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGGACGTCACGCGC‑CGGCGAAGG‑CC‑T‑TAGGTCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCCGAAG‑GATGCCGC‑AGACCC‑TTATCTGGCGGGGGATATCCAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTTCCTGGAGCAATCTCGCAGTGCCGTGGGGCGGTCAtttt > 1:459075/1‑250 (MQ=255) aggctcccACAGCTTAAATACCCCCACGTGC‑GGGAGGCGGGTTGGGG‑ACCGGGCTGGATGAGCCGCCCCTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGATATAGCGAATCCCTTCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATc < 2:459075/245‑1 (MQ=255) caGCGTTAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑CGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGGTAGCGACTTCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGGGGGGCGGTAATTTATCCACCGCAcc > 1:128019/1‑250 (MQ=255) caGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGGGATATCGAATCCCTGCCGTTAGCGACTGCG‑GC‑GTTCGAACTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGGAATTTATCCACGGCAcc > 1:98013/1‑250 (MQ=255) cccgcctctctcccgatccttggccgcgGGTGGTGG‑CCCGGGCTGGAGGAGCCGCTTCTGGCGGGAACGTCCCGCTC‑AGGGGCCGG‑CC‑T‑TAGACCCCCCGCCG‑CCAAGGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGAAAGCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTcc < 2:207324/227‑1 (MQ=255) aaaatccccccACGTCC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GAGGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCcgcg < 1:75012/243‑1 (MQ=255) aTACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCCATGCTTGTTC‑AGG‑CCCGCCAGAAG‑GGTGCCGC‑AGGCCA‑TTATCTGGCGGGAGATATCGAATCCCCGCCGGTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCCATCTCGCAGGGCCGTGGGGCGGGAATTTATCCACGGCACCCcgcgggc > 1:19171/1‑248 (MQ=255) tAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCCATGCTTGTTC‑AAG‑CACGCCAGAAG‑GATGCCGC‑CGACCC‑TTATCTGGCGGGAGATATCGAATCCCCGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCCTGGGGCAATCTCGCAGTGCAGTGGGGCGGGAATTTATCCACGGCACTCCCCGCGCTGTATCggggg > 1:256925/1‑249 (MQ=255) c‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAAAGTCACGCGC‑AGGGGACGG‑CC‑T‑TCGATCTCTCGGCG‑CCAATGCTTGTTC‑CAG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATATGGCGGGGGATATCGAATACCTGCCGTTAGCGACTGCG‑AC‑GTTGGGTCTTGCATGGAGCAATCTCGCCGTGCAGTGGGGCGGTAATTTATCCACGGGACTcc > 1:207324/1‑232 (MQ=255) cgGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGGCACGCGC‑AGGGGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CCCGCCAGAAG‑GATGCCCC‑AGACCA‑CTATCTGGCGGGAGATATCGCATCCCCGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTTCATGGAGCAATCTCGCAGTGCAGGGGGGCGGTAATTTATCCCCCGCACTCCCCGAGCTGTCTCGGGGGGTGCGcccc > 1:64284/1‑251 (MQ=255) gggTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCCCGCGCCAGG‑GAGGG‑GC‑T‑TAGATCTCTCGCCG‑CCACTGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑CGACCA‑TTATCTGACGGGAGATATCGAATCCCCGCCGTTAGCGAATGCG‑AC‑GGTCGATCTTTCCTGGCGCAATCTCCCAGTGCAGTGGGGCGGTAAATTATCCACGGCACCCCGCACGCTGTATCGGGGGGGGCGccccc > 1:188218/1‑250 (MQ=255) ttGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAAAGTCCAGCGC‑AGGCGGCGG‑CC‑T‑TAGATCCCTCGCCG‑CCCATGCCTGTTT‑AGG‑CACGCCCGAAA‑GATGCCGCCAG‑CCC‑CTATCTGGGGGGCGAAAACGGATACCTGCCGTTAACGACTCCG‑GC‑GGTCGGTCTCGCAAAGAGCAATATCGCCATGGAGGGGTGCGGTAATTTTTTCACGGCCCGCCGCGGGCTGTATCGGGTGGGGAGcccccaa > 1:215791/1‑247 (MQ=255) tgG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑CGGTGGCGG‑CCGT‑TAG‑TCTCTCGCCG‑CCCATGCTTGTTC‑CGG‑CACGCCCGACG‑GGTGCCGC‑CGACCA‑TTATCTGTCGGGGGAGATCGCATCCCTGCCGGTAGCGGCTGCG‑AC‑GGTCGATCTTGCCTTGGGCAATCCCGCCCGGCAGGGGGGCGGTAATTTATCCCCGGGACCCCCCGAGCTGTATTGGGTGGGGCGcccccacgggg > 2:215550/1‑244 (MQ=255) gcccgccACTGGGGGGAACTCCACGCGC‑AGTGGACGG‑CA‑T‑TAGATCTTCCGCCG‑CCAATGCTTGTTC‑AGG‑CACGACAGGAG‑GATGCCGC‑AGCCAA‑TTATCTGGCGGGAGATATGGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCAc < 2:80602/249‑1 (MQ=255) tGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGGG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGGGCAGTGGGGCGGTAATTTATCCACGGCACTCCGCGAGCGGTATCGGGGGGGGCGCCCCAAAGGCGTGGGCGCGCTTACCACGCTGGTGcc > 2:94972/1‑250 (MQ=255) gggCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTTTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCa < 1:63825/250‑1 (MQ=255) ggAACGTCGCGCGC‑AGGGGA‑GG‑CC‑TGTAGCTCTCCCGCCG‑CCAATGCTTGGTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACAA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTAGCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGAt < 2:169911/251‑1 (MQ=255) gAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATc < 1:404119/251‑1 (MQ=255) aaaCGTCACGCGC‑AGGTGACGG‑CC‑T‑TGAACCCCTCGCCG‑CCAATGTGTGTTA‑AGG‑CACGCCAGAAG‑GATGCCGA‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATCTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATc < 2:128019/250‑1 (MQ=255) aacgccccgcgC‑AGGTGCCGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCg < 2:165243/244‑1 (MQ=255) tCACGCGC‑AGGTGACGA‑CC‑T‑TAGATCTCTCGCCG‑CCAATACTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCC‑TTATCTGGCGGGAGATATCGTAAACCTGCCGTTAGCGACTGCG‑CC‑GTTCGTTCTTGCATGGAGCAATCTCGCCGTGCAGTGGTGCTGTAATTTATCCACGGCACTCCGCGAGCTGTCTCGGGTGGTGCGACCCAAAGGCGAGGTCGCGTTTACCACTCTGGCGCAGGGCTCGTTAc > 2:368611/1‑251 (MQ=255) cccggcgc‑AGGTGAGGG‑CC‑T‑AAGACCCCTCGCCG‑CCAATGCTGGTCC‑AGG‑CACGCCAGAAG‑GATGCGGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGTTAc < 2:19171/247‑1 (MQ=255) cccgcgC‑AGGTGACGG‑CC‑T‑TAGACCCCTCGCCG‑CCAATGCTTGTCC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGt < 1:174346/245‑1 (MQ=255) gcgc‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTcc < 1:68820/178‑1 (MQ=255) gcgc‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTcc > 2:68820/1‑178 (MQ=255) | TGCGCATGAAATGCAGGATATCGACCGTCTGCTGGAGGTGCTGCATGGCAACGGTTAATAAACAA‑GCCATTGCAGCGGCATTTGGTCGGGCAGCCGCACACTATGAGCAACATGCAGATCTACAGCGCCAGAGTGCTGACGCCTTACTGG‑CAATGCTTCCACAGCGTAAATACACCCACGTAC‑TGGACGCGGGTTGTGG‑ACCTGGCTGGATGAGCCGCCACTGGCGGGAACGTCACGCGC‑AGGTGACGG‑CC‑T‑TAGATCTCTCGCCG‑CCAATGCTTGTTC‑AGG‑CACGCCAGAAG‑GATGCCGC‑AGACCA‑TTATCTGGCGGGAGATATCGAATCCCTGCCGTTAGCGACTGCG‑AC‑GTTCGATCTTGCATGGAGCAATCTCGCAGTGCAGTGGTGCGGTAATTTATCCACGGCACTCCGCGAGCTGTATCGGGTGGTGCGCCCCAAAGGCGTGGTCGCGTTTACCACGCTGGTGCAGGGATCGTTAC > NC_000913/811478‑811960 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |