mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,027,233 | 0 | T | A | 51.8% | 1.2 / 25.1 | 27 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 2,434,882 | 0 | T | G | 42.5% | 45.1 / 14.8 | 41 | Y252S (TAC→TCC) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,892,195 | 0 | A | T | 41.2% | 33.4 / 14.2 | 34 | intergenic (‑297/‑19) | cysJ/queD | sulfite reductase, flavoprotein subunit/6‑carboxy‑5,6,7,8‑tetrahydropterin synthase |
| * | NC_000913 | 2,434,861 | 0 | G | T | 38.5% | 36.3 / 17.7 | 39 | P259Q (CCA→CAA) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,530,920 | 0 | A | G | 36.4% | 53.5 / 13.5 | 44 | V105A (GTC→GCC) | zipA | cell division protein ZipA |
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.3% | 16.9 / 12.8 | 18 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,336,901 | 0 | T | A | 33.3% | 33.7 / 11.0 | 30 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 3,203,311 | 0 | T | A | 32.0% | 92.7 / 17.3 | 51 | *274L (TAA→TTA) | bacA | undecaprenyl pyrophosphate phosphatase |
| * | NC_000913 | 3,943,634 | 0 | A | G | 31.4% | 42.2 / 29.8 | 35 | intergenic (+124/‑70) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 3,280,406 | 0 | C | A | 28.9% | 55.6 / 12.9 | 38 | Q64K (CAA→AAA) | agaV | N‑acetyl‑D‑galactosamine specific PTS enzyme IIB component |
| * | NC_000913 | 3,611,455 | 0 | G | A | 27.8% | 55.0 / 12.2 | 36 | C93C (TGC→TGT) | yhhS | putative transporter YhhS |
| * | NC_000913 | 1,014,028 | 0 | A | G | 22.5% | 87.2 / 10.5 | 40 | D257G (GAT→GGT) | pqiB | intermembrane transport protein PqiB |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4508679 | NA (NA) | 6 (0.160) | 6/486 | 3.0 | 21.4% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 4640419 | 22 (0.590) | coding (18/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | = 271761 | NA (NA) | 6 (0.160) | 6/486 | 3.0 | 20.1% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4640418 = | 24 (0.640) | coding (17/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | 4507459 = | NA (NA) | 6 (0.160) | 6/488 | 3.1 | 20.0% | noncoding (1221/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4640418 = | 24 (0.640) | coding (17/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | = 280111 | NA (NA) | 6 (0.160) | 6/488 | 3.1 | 20.0% | noncoding (181/181 nt) | IS30 | repeat region |
| ? | NC_000913 | 4640418 = | 24 (0.640) | coding (17/141 nt) | yjjY | uncharacterized protein YjjY | |||||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 3 (0.080) | 3/490 | 4.1 | 8.8% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 4555143 = | 31 (0.820) | coding (568/774 nt) | uxuR | DNA‑binding transcriptional repressor UxuR | |||||